Assembly information

DescriptionATCC201684ATCC201684 pacbioNC1MF1RB84109
Assembly size (bp)569170497255610252049772597501425939476958418939
N50 (bp)757563100578811661248522923721846
Scaffold count34942015477780870956495
GC content (%)47.6947.2747.7347.4647.4547.43
Protein-coding Gene count195302302719911220122189221546


DescriptionAphanomyces astaci genotype EAphanomyces stellatus strain 57867
Assembly size (bp)4529807662130275
N50 (bp)365934018
Scaffold count216107607
GC content (%)48.5152.55
Protein-coding Gene count1647925573


Structural overview

Aphanomyces euteiches ATCC201684Aphanomyces euteiches ATCC201684 pacbio
Length (Mb)Cov (%)GC (%)Length (Mb)Cov (%)GC (%)
Genic29.0150.9850.4633.446.0150.75
Intergenic26.346.2344.632.644.9344.2
Protein-coding26.346.2951.1330.341.7351.33
Intronic2.74.8043.873.14.1944.78


NC1MF1
Length (Mb)Cov (%)GC (%)Length (Mb)Cov (%)GC (%)
Genic28.354.4650.4132.354.0050.32
Intergenic23.745.5444.5327.546.0044.1
Protein-coding25.649.3151.0929.349.1150.96
Intronic2.54.7343.782.74.5343.75


RB84109
Length (Mb)Cov (%)GC (%)Length (Mb)Cov (%)GC (%)
Genic32.454.4950.431.754.2050.38
Intergenic27.045.5143.9426.745.8043.94
Protein-coding29.449.5651.0428.749.2051.04
Intronic2.84.6443.8926.84.5943.79


Aphanomyces astaci genotype EAphanomyces stellatus strain 57867
Length (Mb)Cov (%)GC (%)Length (Mb)Cov (%)GC (%)
Genic18.641.1754.3837.560.3756.53
Intergenic26.658.8344.3924.639.6346.48
Protein-coding15.534.2656.5734.455.4557.24
Intronic2.24.9842.972.94.6548.63


Length distribution

Aphanomyces euteiches ATCC201684Aphanomyces euteiches ATCC201684 pacbio
MinMedianMeanMaxN50MinMedianMeanMaxN50
Gene (bp)2001170148730467186120111141450534101857
CDS (bp)103105913473011116747710071315530211673
Exon (bp)319836613653663319837914869714
Intron (bp)214553597746384553498147
Intergenic distance (bp)26021369440273508257714531154924152


NC1MF1
MinMedianMeanMaxN50MinMedianMeanMaxN50
Gene (bp)651100142430503179115011391466305031816
CDS (bp)21999128930231159610010381333302311626
Exon (bp)320135814643614320737814643673
Intron (bp)264548261045264549274545
Intergenic distance (bp)246574420343121525931006228581866


RB84109
MinMedianMeanMaxN50MinMedianMeanMaxN50
Gene (bp)1161151147830467182515411491470396621817
CDS (bp)1121050134530195163514810441334394111623
Exon (bp)320737614800667320637614934669
Intron (bp)264549479545264549356645
Intergenic distance (bp)2596101130351188726191037248621918


Aphanomyces astaci genotype EAphanomyces stellatus strain 57867
MinMedianMeanMaxN50MinMedianMeanMaxN50
Gene (bp)81873113218398141315611361467407281840
CDS (bp)7574494216317113414610381347404731683
Exon (bp)32283529087551322541114941735
Intron (bp)265382365967264650222746
Intergenic distance (bp)25548461922213752509863270301590