BLASTX 2.2.6 [Apr-09-2003]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: nr
3,454,138 sequences; 1,185,965,366 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD54489.1| hypothetical protein [Oryza sativa (japonic... 117 6e-25
gb|ABD28514.1| SMAD/FHA [Medicago truncatula] 86 3e-15
ref|NP_187992.2| unknown protein [Arabidopsis thaliana] 73 1e-11
dbj|BAB01927.1| unnamed protein product [Arabidopsis thaliana] 65 3e-09
ref|XP_502895.1| hypothetical protein [Yarrowia lipolytica]... 38 0.65
>dbj|BAD54489.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 117 bits (293), Expect = 6e-25
Identities = 63/134 (47%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Frame = -1
Query: 827 EEDEGAAVDSDVEGFDI--DLAAIDPVREFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEA 654
E + + DSD E D+ DL++IDPVREFGFLSMGHEFD+YPKGRIR PKDWNWFLEE
Sbjct: 175 EAEAACSGDSDAEAEDLNFDLSSIDPVREFGFLSMGHEFDNYPKGRIRPPKDWNWFLEEV 234
Query: 653 KRTSDDEASGKRRSRSKVLXXXXXXXXXXXXXXXXXXXXXXEKESTGRVTSVKRPKYTTR 474
++ SDDE + + + K +K+S R +SVKR KY TR
Sbjct: 235 RKGSDDEDDEEGKLKGK---GANKKNEGQREDEDWIGESEDDKDSLSRGSSVKRSKYVTR 291
Query: 473 SKSSEKHSRENSKT 432
SK +K +E ++T
Sbjct: 292 SKEPKKPRKEKTET 305
>gb|ABD28514.1| SMAD/FHA [Medicago truncatula]
Length = 303
Score = 85.5 bits (210), Expect = 3e-15
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Frame = -1
Query: 803 DSDVEGFDIDLAAIDPVREFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDEASG 624
+S++E +D++ IDP++EFGFL M HEFD YPKG IR ++W WFLEE + S+DE
Sbjct: 110 ESEIEFDQLDISQIDPIKEFGFLVMRHEFDQYPKGMIRNVENWEWFLEEPSKESEDEDDF 169
Query: 623 KRRSRSKVLXXXXXXXXXXXXXXXXXXXXXXEKESTGRVTSVKRPKYTTRSKSSEKHSRE 444
+ + + K +KE +V K+P+Y+TRSK + +R+
Sbjct: 170 EEKRKIK----GKRKVFRDNEDDVWNGDSEDDKELVAKVGKGKKPRYSTRSKDNRGPNRD 225
Query: 443 -----NSKTGSGRSI 414
NSK S+
Sbjct: 226 IKDSSNSKRKKATSV 240
>ref|NP_187992.2| unknown protein [Arabidopsis thaliana]
Length = 309
Score = 73.2 bits (178), Expect = 1e-11
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Frame = -1
Query: 764 IDPVREFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKR-TSDDEASGKRRSRSKVLXXX 588
IDPV+EFGFL +G EFD YPK R+R K W WFLE++ SD + G ++ R +
Sbjct: 140 IDPVKEFGFLVIGKEFDQYPKSRVRDIKQWEWFLEDSTNGNSDGDEDGDKKGRKGL--GK 197
Query: 587 XXXXXXXXXXXXXXXXXXXEKESTGRVTSVKRPKYTTRSKSSEKHSRENSKTGSGRSI-- 414
+KE + V P Y+TRSK ++K S +S + +G
Sbjct: 198 KRRRKKGNEDDDWSVESDEDKELMVKSKRVVTPTYSTRSKKTKKDSNASSSSSNGAQTKQ 257
Query: 413 --XXXXXXXXXXXXTLGGFLVN 354
TLGGF+V+
Sbjct: 258 RGRADVEEEDDDDETLGGFIVS 279
>dbj|BAB01927.1| unnamed protein product [Arabidopsis thaliana]
Length = 368
Score = 65.5 bits (158), Expect = 3e-09
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = -1
Query: 755 VREFGFLSMGHEFDSYPKGRIRAPKDWNWFLEEAKR-TSDDEASGKRRSRSKVLXXXXXX 579
V EFGFL +G EFD YPK R+R K W WFLE++ SD + G ++ R +
Sbjct: 202 VAEFGFLVIGKEFDQYPKSRVRDIKQWEWFLEDSTNGNSDGDEDGDKKGRKGL--GKKRR 259
Query: 578 XXXXXXXXXXXXXXXXEKESTGRVTSVKRPKYTTRSKSSEKHSRENSKTGSGRSI----X 411
+KE + V P Y+TRSK ++K S +S + +G
Sbjct: 260 RKKGNEDDDWSVESDEDKELMVKSKRVVTPTYSTRSKKTKKDSNASSSSSNGAQTKQRGR 319
Query: 410 XXXXXXXXXXXTLGGFLVN 354
TLGGF+V+
Sbjct: 320 ADVEEEDDDDETLGGFIVS 338
>ref|XP_502895.1| hypothetical protein [Yarrowia lipolytica]
emb|CAG81086.1| unnamed protein product [Yarrowia lipolytica CLIB122]
Length = 1213
Score = 37.7 bits (86), Expect = 0.65
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 788 GFDIDLAAIDPVREFGFL---SMGHEFDSYPKGRIRAPKDWNWFLEEAKRTSDDE 633
G + AA D +REFG GHE++ P+ R + K+ WF ++ + T +DE
Sbjct: 151 GRSVTFAAKDRIREFGHSLDGEEGHEYEQDPEERAQIKKNTYWFEDDEEDTEEDE 205
Database: nr
Posted date: Apr 6, 2006 2:41 PM
Number of letters in database: 1,185,965,366
Number of sequences in database: 3,454,138
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,483,267,104
Number of Sequences: 3454138
Number of extensions: 27054756
Number of successful extensions: 71842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71800
length of database: 1,185,965,366
effective HSP length: 130
effective length of database: 736,927,426
effective search space used: 134120791532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)