TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE443671.1|BE443671 WHE1121_F03_K05ZS Wheat etiolated se... 205 7e-054
gb|CA701904.1|CA701904 wkm2c.pk005.p21 wkm2c Triticum aesti... 205 1e-053
gb|CD452713.1|CD452713 WHE1121_F03_K05ZT CS wheat etiolated... 191 1e-049
gb|BE398846.1|BE398846 WHE0027.A04F990514 ITEC WHE Wheat En... 85 4e-036
gb|BQ806910.1|BQ806910 WHE3584_E10_I20ZS Wheat developing g... 88 5e-036
gb|BQ243798.1|BQ243798 TaE15008G07F TaE15 Triticum aestivum... 89 7e-035
gb|CD932095.1|CD932095 GR45.116N13R010613 GR45 Triticum aes... 142 3e-033
gb|BF199753.1|BF199753 WHE0591-0594_P18_P18ZE Triticum mono... 126 3e-028
gb|CA710781.1|CA710781 wdk2c.pk016.f22 wdk2c Triticum aesti... 89 1e-026
gb|BQ169564.1|BQ169564 WHE0954_E10_J20ZT Wheat pre-anthesis... 120 2e-026
gb|BJ249314.1|BJ249314 BJ249314 Y. Ogihara unpublished cDNA... 75 3e-025
gb|CD888519.1|CD888519 G118.108E23R010925 G118 Triticum aes... 113 2e-024
gb|CD932094.1|CD932094 GR45.116N13F010420 GR45 Triticum aes... 112 3e-024
gb|BQ238015.1|BQ238015 TaE05009E02F TaE05 Triticum aestivum... 112 4e-024
gb|CA704025.1|CA704025 wdk1c.pk007.d1 wdk1c Triticum aestiv... 111 1e-023
gb|BQ246543.1|BQ246543 TaE15008G07R TaE15 Triticum aestivum... 82 2e-023
gb|BE489184.1|BE489184 WHE1075_G06_M11ZS Wheat unstressed s... 105 6e-022
gb|CK205296.1|CK205296 FGAS016764 Triticum aestivum FGAS: L... 66 2e-021
>gb|BE443671.1|BE443671 WHE1121_F03_K05ZS Wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1121_F03_K05,
mRNA sequence
Length = 618
Score = 205 bits (442), Expect(2) = 7e-054
Identities = 80/98 (81%), Positives = 91/98 (92%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAKYP+++HHRASSLPSVAAHP +IGCSQGFT LY+G ANPN+ VGAVVGGP+
Sbjct: 603 YMVGYGAKYPKKLHHRASSLPSVAAHPGKIGCSQGFTGLYSGAANPNVHVGAVVGGPNQN 424
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
D+FPD+R+D+EHSEPATYINAPLVGALAYLAHS GQL*
Sbjct: 423 DQFPDQRSDYEHSEPATYINAPLVGALAYLAHSSGQL* 310
Score = 161 bits (347), Expect(2) = 3e-041
Identities = 73/97 (75%), Positives = 74/97 (76%)
Frame = +2 / +2
Query: 302 *SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYS 481
*SWP E AR*A APTSGALM*VAGSECS S R SGN S GPPTTAPT GLA P S
Sbjct: 311 *SWPEEWAR*ARAPTSGALM*VAGSECS*SLRWSGNWSFWLGPPTTAPT*TFGLAAPE*S 490
Query: 482 AVNPCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
VNPCEQPI GCAAT+GSDEARWW GYLAP PTM
Sbjct: 491 PVNPCEQPIFPGCAATEGSDEARWWSFFGYLAPYPTM 601
Score = 27.2 bits (53), Expect(2) = 3e-041
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1 / +1
Query: 211 PWFCLHWGRQIAML*FPNNQSTRQQLTLGS 300
P FCLHWG +I + +Q T+ S
Sbjct: 193 PLFCLHWGLRITSRQSIRSPEQSRQRTISS 282
Score = 26.3 bits (51), Expect(2) = 7e-054
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / -2
Query: 236 RPQCKQNQGRFA 201
RPQCKQN+G A
Sbjct: 218 RPQCKQNKGTHA 183
>gb|CA701904.1|CA701904 wkm2c.pk005.p21 wkm2c Triticum aestivum cDNA clone wkm2c.pk005.p21
5' end, mRNA sequence
Length = 506
Score = 205 bits (442), Expect(2) = 1e-053
Identities = 80/98 (81%), Positives = 91/98 (92%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYGAKYP+++HHRASSLPSVAAHP +IGCSQGFT LY+G ANPN+ VGAVVGGP+
Sbjct: 18 YMVGYGAKYPKKLHHRASSLPSVAAHPGKIGCSQGFTGLYSGAANPNVHVGAVVGGPNQN 197
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
D+FPD+R+D+EHSEPATYINAPLVGALAYLAHS GQL*
Sbjct: 198 DQFPDQRSDYEHSEPATYINAPLVGALAYLAHSSGQL* 311
Score = 163 bits (350), Expect = 2e-039
Identities = 73/97 (75%), Positives = 75/97 (77%)
Frame = +2 / -2
Query: 302 *SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYS 481
*SWP E AR*A APTSGALM*VAGSECS S R SGN S GPPTTAPT GLA P S
Sbjct: 310 *SWPEEWAR*ARAPTSGALM*VAGSECS*SLRWSGNWSFWLGPPTTAPTCTFGLAAPE*S 131
Query: 482 AVNPCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
VNPCEQPIL GCAAT+GS+EARWW GYLAP PTM
Sbjct: 130 PVNPCEQPILPGCAATEGSEEARWWSFFGYLAPYPTM 20
Score = 25.4 bits (49), Expect(2) = 1e-053
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2 / +2
Query: 236 RPQCKQNQG 210
RPQCKQN+G
Sbjct: 398 RPQCKQNKG 424
>gb|CD452713.1|CD452713 WHE1121_F03_K05ZT CS wheat etiolated seedling root normalized cDNA
library Triticum aestivum cDNA clone WHE1121_F03_K05,
mRNA sequence
Length = 591
Score = 191 bits (411), Expect(2) = 1e-049
Identities = 75/94 (79%), Positives = 86/94 (91%)
Frame = -1 / +3
Query: 582 YGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQDRFP 403
YGAKYP+++HHRASSLPSVAAHP +IGCSQGFT LY+G ANPN+ VGAVVGGP+ D+FP
Sbjct: 3 YGAKYPKKLHHRASSLPSVAAHPGKIGCSQGFTGLYSGAANPNVHVGAVVGGPNQNDQFP 182
Query: 402 DERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
D+R+ +EHSEPATYINAPLVGALAYLAHS GQL*
Sbjct: 183 DQRSYYEHSEPATYINAPLVGALAYLAHSSGQL* 284
Score = 152 bits (326), Expect(2) = 3e-038
Identities = 69/93 (74%), Positives = 70/93 (75%)
Frame = +2 / -3
Query: 302 *SWP*ECAR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPAYS 481
*SWP E AR*A APTSGALM*VAGSECS R SGN S GPPTTAPT GLA P S
Sbjct: 283 *SWPEEWAR*ARAPTSGALM*VAGSECS**LRWSGNWSFWLGPPTTAPT*TFGLAAPE*S 104
Query: 482 AVNPCEQPILAGCAATDGSDEARWWMRRGYLAP 580
VNPCEQPI GCAAT+GSDEARWW GYLAP
Sbjct: 103 PVNPCEQPIFPGCAATEGSDEARWWSFFGYLAP 5
Score = 27.2 bits (53), Expect(2) = 3e-038
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1 / -2
Query: 211 PWFCLHWGRQIAML*FPNNQSTRQQLTLGS 300
P FCLHWG +I + +Q T+ S
Sbjct: 401 PLFCLHWGLRITSRQSIRSPEQSRQRTISS 312
Score = 26.3 bits (51), Expect(2) = 1e-049
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2 / +1
Query: 236 RPQCKQNQGRFA 201
RPQCKQN+G A
Sbjct: 376 RPQCKQNKGTHA 411
>gb|BE398846.1|BE398846 WHE0027.A04F990514 ITEC WHE Wheat Endosperm Library Triticum
aestivum cDNA clone WHE0027.A04, mRNA sequence
Length = 412
Score = 84.9 bits (179), Expect(3) = 4e-036
Identities = 35/56 (62%), Positives = 38/56 (67%)
Frame = -1 / -1
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
L A G NP + GAVVGGPD D FPD+R D+ SEP TY NAPLVG LAY A Y
Sbjct: 280 LNAAGPNPXVHTGAVVGGPDENDAFPDDRADYARSEPVTYTNAPLVGCLAYFAGRY 113
Score = 83.1 bits (175), Expect(3) = 4e-036
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTAL 478
YMVGYGA+YP+RIHHRASS+PSVAAHPARIGC +G L
Sbjct: 398 YMVGYGARYPQRIHHRASSMPSVAAHPARIGCQRGLPEL 282
Score = 22.1 bits (42), Expect(3) = 4e-036
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -1 / -3
Query: 210 TLRLWVLIYC 181
T +W+LIYC
Sbjct: 101 TAAVWILIYC 72
>gb|BQ806910.1|BQ806910 WHE3584_E10_I20ZS Wheat developing grains cDNA library Triticum
aestivum cDNA clone WHE3584_E10_I20, mRNA sequence
Length = 597
Score = 87.7 bits (185), Expect(2) = 5e-036
Identities = 36/56 (64%), Positives = 39/56 (69%)
Frame = -1 / +3
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
L A G NPN+ GAVVGGPD DR PD+R D+ SEP TY NAPLVG LAY A Y
Sbjct: 411 LNAAGPNPNVHTGAVVGGPDENDRXPDDRADYARSEPVTYTNAPLVGCLAYFAGRY 578
Score = 84.0 bits (177), Expect(2) = 5e-036
Identities = 30/36 (83%), Positives = 35/36 (97%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
YMVGYGA+YP+RIHHRASS+PSVAAHPARIGC +G+
Sbjct: 294 YMVGYGARYPQRIHHRASSMPSVAAHPARIGCQEGY 401
>gb|BQ243798.1|BQ243798 TaE15008G07F TaE15 Triticum aestivum cDNA clone TaE15008G07F, mRNA
sequence
Length = 535
Score = 89.0 bits (188), Expect(2) = 7e-035
Identities = 37/56 (66%), Positives = 40/56 (71%)
Frame = -1 / -3
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
L A G NPN+ GAVVGGPD D FPD+R D+ SEP TY NAPLVG LAY A SY
Sbjct: 323 LNAPGPNPNVHTGAVVGGPDENDAFPDDRVDYARSEPVTYTNAPLVGCLAYFAGSY 156
Score = 79.0 bits (166), Expect(2) = 7e-035
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -1 / -3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
YMVGYGA+YP+RIHHRA S+PSVAAHPA IGC +G+
Sbjct: 440 YMVGYGARYPQRIHHRALSMPSVAAHPAHIGCQEGY 333
Score = 66.6 bits (139), Expect(2) = 7e-021
Identities = 32/51 (62%), Positives = 36/51 (70%)
Frame = +2 / +1
Query: 323 AR*ASAPTSGALM*VAGSECSWSFRSSGNLSCMSGPPTTAPTSRLGLAPPA 475
A+*A PT GAL+*V GS+ + S RSSGN S SGPPTTAP LGL P A
Sbjct: 166 AK*ARQPTRGALV*VTGSDRA*STRSSGNASFSSGPPTTAPVCTLGLGPGA 318
Score = 54.2 bits (112), Expect(2) = 7e-021
Identities = 22/34 (64%), Positives = 24/34 (70%)
Frame = +2 / +1
Query: 491 PCEQPILAGCAATDGSDEARWWMRRGYLAP*PTM 592
P QP+ AGCAATDG D A WW+ G AP*PTM
Sbjct: 337 PSWQPMCAGCAATDGIDNALWWILCG*RAP*PTM 438
>gb|CD932095.1|CD932095 GR45.116N13R010613 GR45 Triticum aestivum cDNA clone GR45116N13,
mRNA sequence
Length = 457
Score = 142 bits (305), Expect = 3e-033
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+GA+YPRR+HHR +S+PSV H ARIGC +GF L++ + N+LVGAVVGGPD
Sbjct: 457 YMVGFGARYPRRVHHRGASMPSVRDHLARIGCDEGFHYLHSSDPDRNVLVGAVVGGPDQS 278
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLA 322
D + D R+++ +EP+TY NAPLVGALA+ A
Sbjct: 277 DSYSDNRDNYAQAEPSTYTNAPLVGALAFFA 185
>gb|BF199753.1|BF199753 WHE0591-0594_P18_P18ZE Triticum monococcum vegetative apex cDNA
library Triticum monococcum cDNA clone
WHE0591-0594_P18_P18, mRNA sequence
Length = 340
Score = 126 bits (269), Expect = 3e-028
Identities = 51/89 (57%), Positives = 61/89 (68%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVGYG +YP+RIHHR SSL S+ HP R+ C G + NPN LVGA+VG P
Sbjct: 16 YMVGYGDRYPQRIHHRWSSLASIKDHPDRMACKDGTPYYDSSSPNPNPLVGAIVGRPGED 195
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAY 328
D + D+R D++ SEP TYINAPLVG LAY
Sbjct: 196 DAYGDDRADYKKSEPTTYINAPLVGVLAY 282
>gb|CA710781.1|CA710781 wdk2c.pk016.f22 wdk2c Triticum aestivum cDNA clone wdk2c.pk016.f22
5' end, mRNA sequence
Length = 321
Score = 89.0 bits (188), Expect(3) = 1e-026
Identities = 37/56 (66%), Positives = 40/56 (71%)
Frame = -1 / -3
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSY 313
L A G NPN+ GAVVGGPD D FPD+R D+ SEP TY NAPLVG LAY A SY
Sbjct: 178 LNAPGPNPNVHTGAVVGGPDENDAFPDDRVDYARSEPVTYTNAPLVGCLAYFAGSY 11
Score = 45.1 bits (92), Expect(3) = 1e-026
Identities = 19/29 (65%), Positives = 20/29 (68%)
Frame = -1 / -2
Query: 564 RRIHHRASSLPSVAAHPARIGCSQGFTAL 478
R HHRASS+PSVAAHPA IG G L
Sbjct: 266 RGSHHRASSMPSVAAHPAHIGLPGGLPEL 180
Score = 22.1 bits (42), Expect(3) = 1e-026
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -1 / -3
Query: 591 MVGYGAKYP 565
++GYGA+YP
Sbjct: 295 LLGYGARYP 269
>gb|BQ169564.1|BQ169564 WHE0954_E10_J20ZT Wheat pre-anthesis spike cDNA library Triticum
aestivum cDNA clone WHE0954_E10_J20, mRNA sequence
Length = 529
Score = 120 bits (256), Expect = 2e-026
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = -1 / -1
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYLAHSYGQL* 301
LY+G ANPN+ VGAVVGGP+ D+FPD+R+D+EHSEPATYINAPLVGALAYLAHS GQL*
Sbjct: 493 LYSGAANPNVHVGAVVGGPNQNDQFPDQRSDYEHSEPATYINAPLVGALAYLAHSSGQL* 314
>gb|BJ249314.1|BJ249314 BJ249314 Y. Ogihara unpublished cDNA library, Wh_f Triticum
aestivum cDNA clone whf10g01 3', mRNA sequence
Length = 613
Score = 74.8 bits (157), Expect(2) = 3e-025
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = -1 / -2
Query: 462 NPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALA 331
NPN+ VGA+VGGPD D+F D R D HSEPATYINA VGA A
Sbjct: 369 NPNVHVGAIVGGPDENDQFGDNRGDSAHSEPATYINAAFVGACA 238
Score = 60.6 bits (126), Expect(2) = 3e-025
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTA 481
YMVG+G +PRRIHHRA+S+PS+ R+ C++GF++
Sbjct: 504 YMVGFGGAFPRRIHHRAASIPSIEVLSRRVPCNEGFSS 391
>gb|CD888519.1|CD888519 G118.108E23R010925 G118 Triticum aestivum cDNA clone G118108E23,
mRNA sequence
Length = 452
Score = 113 bits (241), Expect = 2e-024
Identities = 42/93 (45%), Positives = 60/93 (64%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG G +YP + HHR +SLPS+ +P +I C +G + N N++ GA+VGGPD
Sbjct: 421 YMVGVGKRYPLQPHHRGASLPSIRKYPGKISCGKGAEYFHRSAPNLNVIDGAIVGGPDNN 242
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHS 316
D + D R +++ EP+TY AP+VG LA L H+
Sbjct: 241 DHYDDSRGNYQQGEPSTYTVAPIVGVLARLLHN 143
>gb|CD932094.1|CD932094 GR45.116N13F010420 GR45 Triticum aestivum cDNA clone GR45116N13,
mRNA sequence
Length = 689
Score = 112 bits (240), Expect = 3e-024
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = -1 / +1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG+GA+YPRR+HHR +S+PSV HP RIGC +GF L++ + N+LVGAVVGGPD
Sbjct: 433 YMVGFGARYPRRVHHRGASMPSVREHPGRIGCDEGFHYLHSSDPDRNVLVGAVVGGPDQS 612
Query: 414 DRFPDERNDHEHSEPA 367
+ + R+++ +EP+
Sbjct: 613 ESYSXHRDNYAQAEPS 660
>gb|BQ238015.1|BQ238015 TaE05009E02F TaE05 Triticum aestivum cDNA clone TaE05009E02F, mRNA
sequence
Length = 546
Score = 112 bits (239), Expect = 4e-024
Identities = 42/93 (45%), Positives = 60/93 (64%)
Frame = -1 / -2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG G +YP + HHR +SLPS+ +P +I C +G + N N++ GA+VGGPD
Sbjct: 377 YMVGVGKRYPLQPHHRGASLPSIRNNPGKISCGKGAQYFHRSAPNLNVIDGAIVGGPDNN 198
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHS 316
D + D R +++ EP+TY AP+VG LA L H+
Sbjct: 197 DHYDDSRGNYQQGEPSTYTVAPIVGVLARLLHN 99
>gb|CA704025.1|CA704025 wdk1c.pk007.d1 wdk1c Triticum aestivum cDNA clone wdk1c.pk007.d1 5'
end, mRNA sequence
Length = 457
Score = 111 bits (236), Expect = 1e-023
Identities = 42/93 (45%), Positives = 58/93 (62%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGPDMQ 415
YMVG G YP + HHR SLPS+ +P +I C +G + N N++ GA+VGGPD
Sbjct: 415 YMVGVGKSYPLQPHHRGXSLPSIRNNPGKISCGKGAQYFHRSAPNLNVIDGAIVGGPDNN 236
Query: 414 DRFPDERNDHEHSEPATYINAPLVGALAYLAHS 316
D + D R +++ EP+TY AP+VG LA L H+
Sbjct: 235 DHYDDSRGNYQQGEPSTYTVAPIVGVLARLLHN 137
>gb|BQ246543.1|BQ246543 TaE15008G07R TaE15 Triticum aestivum cDNA clone TaE15008G07R, mRNA
sequence
Length = 698
Score = 81.7 bits (172), Expect(2) = 2e-023
Identities = 29/36 (80%), Positives = 34/36 (94%)
Frame = -1 / +2
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGF 487
YMVGYGA+YP+RIHHRASS+PSVAAHPA IGC +G+
Sbjct: 494 YMVGYGARYPQRIHHRASSMPSVAAHPAHIGCQEGY 601
Score = 47.8 bits (98), Expect(2) = 2e-023
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = -1 / +2
Query: 480 LYAGGANPNLLVGAVVGGPDMQDRFPDER 394
L A G NPN+ GAVVGGPD D FPD+R
Sbjct: 611 LNAPGPNPNVHTGAVVGGPDENDAFPDDR 697
>gb|BE489184.1|BE489184 WHE1075_G06_M11ZS Wheat unstressed seedling shoot normalized cDNA
library Triticum aestivum cDNA clone WHE1075_G06_M11,
mRNA sequence
Length = 394
Score = 105 bits (223), Expect = 6e-022
Identities = 41/57 (71%), Positives = 45/57 (78%)
Frame = -1 / +3
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALYAGGANPNLLVGAVVGGP 424
YMVGYG ++PRRIHHR SS+PSVAAHPARIGC G + NPNLLVGAVVGGP
Sbjct: 189 YMVGYGPRFPRRIHHRGSSIPSVAAHPARIGCKAGAAYYASAAPNPNLLVGAVVGGP 359
>gb|CK205296.1|CK205296 FGAS016764 Triticum aestivum FGAS: Library 5 GATE 7 Triticum
aestivum cDNA, mRNA sequence
Length = 1024
Score = 66.1 bits (138), Expect(2) = 2e-021
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1 / -1
Query: 465 ANPNLLVGAVVGGPDMQDRFPDERNDHEHSEPATYINAPLVGALAYL 325
+NPN+LVGA+VGGPD DRF D R ++ +E TY AP+VG A L
Sbjct: 490 SNPNVLVGAIVGGPDRSDRFRDNRENYMQTEGCTYNTAPMVGMFAKL 350
Score = 56.5 bits (117), Expect(2) = 2e-021
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = -1 / -1
Query: 594 YMVGYGAKYPRRIHHRASSLPSVAAHPARIGCSQGFTALY 475
Y+VGYGAKYP R+HHRA+ + IGCSQGF Y
Sbjct: 622 YLVGYGAKYPARVHHRAAFIVPYKHSKQFIGCSQGFDHWY 503
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 597,758,951
Number of Sequences: 636343
Number of extensions: 10274388
Number of successful extensions: 252874
Number of sequences better than 1.0e-020: 25
length of database: 122,413,413
effective HSP length: 52
effective length of database: 89,323,577
effective search space used: 12951918665
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)