TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (L... 241 1e-062
gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1... 241 1e-062
gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle... 239 3e-062
gb|BE125589.1|BE125589 DG1_28_G09.b1_A002 Dark Grown 1 (DG1... 199 2e-050
gb|BG159053.1|BG159053 RHIZ2_17_B11.b1_A003 Rhizome2 (RHIZ2... 198 6e-050
gb|BG241910.1|BG241910 RHIZ2_17_B11.b2_A003 Rhizome2 (RHIZ2... 173 1e-042
gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorg... 171 3e-042
gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation... 112 9e-042
gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorgh... 112 9e-042
gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation... 151 5e-036
gb|BE357301.1|BE357301 DG1_148_A07.b1_A002 Dark Grown 1 (DG... 79 1e-029
gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (L... 123 2e-027
gb|CW284854.1|CW284854 104_761_11410019_148_35495_034 Sorgh... 74 8e-026
gb|CW086991.1|CW086991 104_431_10947336_114_33025_092 Sorgh... 74 8e-026
gb|CW396350.1|CW396350 fsbb001f084m03k0 Sorghum methylation... 67 3e-024
gb|BF587259.1|BF587259 FM1_34_B12.b1_A003 Floral-Induced Me... 111 7e-024
gb|BE919008.1|BE919008 FM1_2_H09.b1_A003 Floral-Induced Mer... 105 4e-022
gb|CW183628.1|CW183628 104_599_11164715_148_36672_038 Sorgh... 103 1e-021
>gb|AW745058.1|AW745058 LG1_386_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 241 bits (520), Expect = 1e-062
Identities = 98/113 (86%), Positives = 99/113 (87%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCW 183
R +YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCW
Sbjct: 64 RAKYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCW 243
Query: 182 MRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
MRPEDIDYKRPVTECHSCSD SIVFKDSKTYSDKLVKGAKAL
Sbjct: 244 MRPEDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKAL 402
Score = 236 bits (509), Expect = 1e-061
Identities = 94/103 (91%), Positives = 99/103 (96%)
Frame = +2 / -1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RC 226
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RC
Sbjct: 379 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RC 200
Query: 227 HLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
HLHPPERQSCLSC+QMN* F*GCSLFPT*SAP*YGRAHRWP T
Sbjct: 199 HLHPPERQSCLSCRQMN*MF*GCSLFPT*SAP*YGRAHRWPHT 71
Score = 227 bits (491), Expect = 4e-059
Identities = 96/107 (89%), Positives = 98/107 (91%)
Frame = +3 / -2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFR 221
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FR
Sbjct: 384 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFR 205
Query: 222 GVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
GVTYTHLSDNPVYRV R*IE FEDVVCSPLDQLLDMVELTDGL+ P
Sbjct: 204 GVTYTHLSDNPVYRVGR*IECFEDVVCSPLDQLLDMVELTDGLILSP 64
Score = 204 bits (439), Expect = 7e-052
Identities = 88/103 (85%), Positives = 89/103 (86%)
Frame = -2 / +3
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 78 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 257
Query: 168 HRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQ 40
HRLQKASH *NGC PGCSFHSVQGQQNLL QARQ
Sbjct: 258 HRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQNLL*QARQ 386
Score = 172 bits (370), Expect = 2e-042
Identities = 84/115 (73%), Positives = 84/115 (73%)
Frame = +1 / -3
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P RA AP NTME EQE*HSVTGLL*SMSSGLIQQ*
Sbjct: 413 PNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSSGLIQQ* 234
Query: 193 WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVPHLISSLIWSSSPMASYL
Sbjct: 233 WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVPHLISSLIWSSSPMASYL 69
Score = 124 bits (265), Expect = 7e-028
Identities = 62/81 (76%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 361 GRGTRPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG 182
G RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG
Sbjct: 65 GLSMRPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG 244
Query: 181 *DQRTSTTKGQSPSVTLAQI* 119
*DQRTS TKGQS SVTLAQI*
Sbjct: 245 *DQRTSITKGQSLSVTLAQI* 307
>gb|BE357514.1|BE357514 DG1_20_G09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 241 bits (520), Expect = 1e-062
Identities = 98/113 (86%), Positives = 99/113 (87%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCW 183
R +YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCW
Sbjct: 142 RAKYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCW 321
Query: 182 MRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
MRPEDIDYKRPVTECHSCSD SIVFKDSKTYSDKLVKGAKAL
Sbjct: 322 MRPEDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKAL 480
Score = 236 bits (509), Expect = 1e-061
Identities = 94/103 (91%), Positives = 99/103 (96%)
Frame = +2 / -1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RC 226
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RC
Sbjct: 457 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RC 278
Query: 227 HLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
HLHPPERQSCLSC+QMN* F*GCSLFPT*SAP*YGRAHRWP T
Sbjct: 277 HLHPPERQSCLSCRQMN*MF*GCSLFPT*SAP*YGRAHRWPHT 149
Score = 227 bits (491), Expect = 4e-059
Identities = 96/107 (89%), Positives = 98/107 (91%)
Frame = +3 / -2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFR 221
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FR
Sbjct: 462 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFR 283
Query: 222 GVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
GVTYTHLSDNPVYRV R*IE FEDVVCSPLDQLLDMVELTDGL+ P
Sbjct: 282 GVTYTHLSDNPVYRVGR*IECFEDVVCSPLDQLLDMVELTDGLILSP 142
Score = 204 bits (439), Expect = 7e-052
Identities = 88/103 (85%), Positives = 89/103 (86%)
Frame = -2 / +3
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 156 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 335
Query: 168 HRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQ 40
HRLQKASH *NGC PGCSFHSVQGQQNLL QARQ
Sbjct: 336 HRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQNLL*QARQ 464
Score = 172 bits (370), Expect = 2e-042
Identities = 84/115 (73%), Positives = 84/115 (73%)
Frame = +1 / -3
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P RA AP NTME EQE*HSVTGLL*SMSSGLIQQ*
Sbjct: 491 PNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSSGLIQQ* 312
Query: 193 WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVPHLISSLIWSSSPMASYL
Sbjct: 311 WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVPHLISSLIWSSSPMASYL 147
Score = 124 bits (265), Expect = 7e-028
Identities = 62/81 (76%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 361 GRGTRPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG 182
G RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG
Sbjct: 143 GLSMRPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG 322
Query: 181 *DQRTSTTKGQSPSVTLAQI* 119
*DQRTS TKGQS SVTLAQI*
Sbjct: 323 *DQRTSITKGQSLSVTLAQI* 385
>gb|BI098991.1|BI098991 IP1_36_A03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 446
Score = 239 bits (516), Expect = 3e-062
Identities = 97/111 (87%), Positives = 98/111 (88%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCWMR
Sbjct: 11 KYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCWMR 190
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PEDIDYKRPVTECHSCSD SIVFKDSKTYSDKLVKGAKAL
Sbjct: 191 PEDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKAL 343
Score = 236 bits (509), Expect = 1e-061
Identities = 94/103 (91%), Positives = 99/103 (96%)
Frame = +2 / -1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RC 226
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RC
Sbjct: 320 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RC 141
Query: 227 HLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
HLHPPERQSCLSC+QMN* F*GCSLFPT*SAP*YGRAHRWP T
Sbjct: 140 HLHPPERQSCLSCRQMN*MF*GCSLFPT*SAP*YGRAHRWPHT 12
Score = 226 bits (488), Expect = 1e-058
Identities = 95/104 (91%), Positives = 97/104 (93%)
Frame = +3 / -2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFR 221
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FR
Sbjct: 325 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFR 146
Query: 222 GVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLV 353
GVTYTHLSDNPVYRV R*IE FEDVVCSPLDQLLDMVELTDGL+
Sbjct: 145 GVTYTHLSDNPVYRVGR*IECFEDVVCSPLDQLLDMVELTDGLI 14
Score = 204 bits (439), Expect = 7e-052
Identities = 88/103 (85%), Positives = 89/103 (86%)
Frame = -2 / +1
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 19 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 198
Query: 168 HRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQNLLRQARQ 40
HRLQKASH *NGC PGCSFHSVQGQQNLL QARQ
Sbjct: 199 HRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQNLL*QARQ 327
Score = 172 bits (370), Expect = 2e-042
Identities = 84/115 (73%), Positives = 84/115 (73%)
Frame = +1 / -3
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P RA AP NTME EQE*HSVTGLL*SMSSGLIQQ*
Sbjct: 354 PNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSSGLIQQ* 175
Query: 193 WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLIWSSSPMASYL 357
WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVPHLISSLIWSSSPMASYL
Sbjct: 174 WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVPHLISSLIWSSSPMASYL 10
Score = 122 bits (262), Expect = 2e-027
Identities = 61/77 (79%), Positives = 61/77 (79%)
Frame = -1 / +3
Query: 349 RPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG*DQR 170
RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG*DQR
Sbjct: 18 RPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG*DQR 197
Query: 169 TSTTKGQSPSVTLAQI* 119
TS TKGQS SVTLAQI*
Sbjct: 198 TSITKGQSLSVTLAQI* 248
>gb|BE125589.1|BE125589 DG1_28_G09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 415
Score = 199 bits (429), Expect = 2e-050
Identities = 81/89 (91%), Positives = 85/89 (95%)
Frame = +2 / -1
Query: 89 LQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RCHLHPPERQSCLSCQ 268
LQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RCHLHPPERQSCLSC+
Sbjct: 415 LQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RCHLHPPERQSCLSCR 236
Query: 269 QMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
QMN* F*GCSLFPT*SAP*YGRAHRWP T
Sbjct: 235 QMN*MF*GCSLFPT*SAP*YGRAHRWPHT 149
Score = 198 bits (427), Expect = 6e-050
Identities = 77/80 (96%), Positives = 78/80 (97%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCW 183
R +YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCW
Sbjct: 142 RAKYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCW 321
Query: 182 MRPEDIDYKRPVTECHSCSD 123
MRPEDIDYKRPVTECHSCSD
Sbjct: 322 MRPEDIDYKRPVTECHSCSD 381
Score = 193 bits (416), Expect = 1e-048
Identities = 81/91 (89%), Positives = 83/91 (91%)
Frame = +3 / -2
Query: 90 CSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFRGVTYTHLSDNPVYRVS 269
CSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FRGVTYTHLSDNPVYRV
Sbjct: 414 CSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFRGVTYTHLSDNPVYRVG 235
Query: 270 R*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
R*IE FEDVVCSPLDQLLDMVELTDGL+ P
Sbjct: 234 R*IECFEDVVCSPLDQLLDMVELTDGLILSP 142
Score = 169 bits (363), Expect = 2e-041
Identities = 72/86 (83%), Positives = 73/86 (84%)
Frame = -2 / +3
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 156 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 335
Query: 168 HRLQKASHXXXXXXXXXX*NGCCPGC 91
HRLQKASH *NGC PGC
Sbjct: 336 HRLQKASH*VSLLLRSSI*NGCRPGC 413
Score = 159 bits (342), Expect = 2e-038
Identities = 75/77 (97%), Positives = 75/77 (97%)
Frame = +1 / -3
Query: 127 EQE*HSVTGLL*SMSSGLIQQ*WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVP 306
EQE*HSVTGLL*SMSSGLIQQ*WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVP
Sbjct: 377 EQE*HSVTGLL*SMSSGLIQQ*WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVP 198
Query: 307 HLISSLIWSSSPMASYL 357
HLISSLIWSSSPMASYL
Sbjct: 197 HLISSLIWSSSPMASYL 147
Score = 124 bits (265), Expect = 7e-028
Identities = 62/81 (76%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 361 GRGTRPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG 182
G RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG
Sbjct: 143 GLSMRPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG 322
Query: 181 *DQRTSTTKGQSPSVTLAQI* 119
*DQRTS TKGQS SVTLAQI*
Sbjct: 323 *DQRTSITKGQSLSVTLAQI* 385
>gb|BG159053.1|BG159053 RHIZ2_17_B11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 198 bits (427), Expect = 6e-050
Identities = 77/80 (96%), Positives = 78/80 (97%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCW 183
R +YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCW
Sbjct: 254 RAKYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCW 433
Query: 182 MRPEDIDYKRPVTECHSCSD 123
MRPEDIDYKRPVTECHSCSD
Sbjct: 434 MRPEDIDYKRPVTECHSCSD 493
Score = 188 bits (406), Expect = 2e-047
Identities = 77/84 (91%), Positives = 80/84 (95%)
Frame = +2 / -3
Query: 104 QPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*R 283
QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RCHLHPPERQSCLSC+QMN*
Sbjct: 512 QPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RCHLHPPERQSCLSCRQMN*M 333
Query: 284 F*GCSLFPT*SAP*YGRAHRWPRT 355
F*GCSLFPT*SAP*YGRAHRWP T
Sbjct: 332 F*GCSLFPT*SAP*YGRAHRWPHT 261
Score = 182 bits (392), Expect = 2e-045
Identities = 77/86 (89%), Positives = 79/86 (91%)
Frame = +3 / -1
Query: 105 SHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFRGVTYTHLSDNPVYRVSR*IEG 284
SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FRGVTYTHLSDNPVYRV R*IE
Sbjct: 511 SHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFRGVTYTHLSDNPVYRVGR*IEC 332
Query: 285 FEDVVCSPLDQLLDMVELTDGLVPRP 362
FEDVVCSPLDQLLDMVELTDGL+ P
Sbjct: 331 FEDVVCSPLDQLLDMVELTDGLILSP 254
Score = 160 bits (344), Expect = 8e-039
Identities = 69/82 (84%), Positives = 70/82 (85%)
Frame = -2 / +1
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 268 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 447
Query: 168 HRLQKASHXXXXXXXXXX*NGC 103
HRLQKASH *NGC
Sbjct: 448 HRLQKASH*VSLLLRSSI*NGC 513
Score = 159 bits (342), Expect = 2e-038
Identities = 75/77 (97%), Positives = 75/77 (97%)
Frame = +1 / -2
Query: 127 EQE*HSVTGLL*SMSSGLIQQ*WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVP 306
EQE*HSVTGLL*SMSSGLIQQ*WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVP
Sbjct: 489 EQE*HSVTGLL*SMSSGLIQQ*WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVP 310
Query: 307 HLISSLIWSSSPMASYL 357
HLISSLIWSSSPMASYL
Sbjct: 309 HLISSLIWSSSPMASYL 259
Score = 124 bits (265), Expect = 7e-028
Identities = 62/81 (76%), Positives = 62/81 (76%)
Frame = -1 / +3
Query: 361 GRGTRPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG 182
G RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG
Sbjct: 255 GLSMRPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG 434
Query: 181 *DQRTSTTKGQSPSVTLAQI* 119
*DQRTS TKGQS SVTLAQI*
Sbjct: 435 *DQRTSITKGQSLSVTLAQI* 497
>gb|BG241910.1|BG241910 RHIZ2_17_B11.b2_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 173 bits (373), Expect = 1e-042
Identities = 68/71 (95%), Positives = 69/71 (97%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCW 183
R +YEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG SQPNDHYCW
Sbjct: 254 RAKYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGGSQPNDHYCW 433
Query: 182 MRPEDIDYKRP 150
MRPEDIDYKRP
Sbjct: 434 MRPEDIDYKRP 466
Score = 160 bits (344), Expect = 8e-039
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +2 / -2
Query: 149 LAFCSRCPLVSSSSNGH*ADCCL*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*Y 328
LAFC+RCPLVSSSSNGH*ADC L*RCHLHPPERQSCLSC+QMN* F*GCSLFPT*SAP*Y
Sbjct: 467 LAFCNRCPLVSSSSNGH*ADCHL*RCHLHPPERQSCLSCRQMN*MF*GCSLFPT*SAP*Y 288
Query: 329 GRAHRWPRT 355
GRAHRWP T
Sbjct: 287 GRAHRWPHT 261
Score = 157 bits (338), Expect = 6e-038
Identities = 64/71 (90%), Positives = 66/71 (92%)
Frame = +3 / -3
Query: 150 WPFVVDVLWSHPAVMVIRLTAAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDM 329
WPFV+DVLWSHPAVMVIRLTA FRGVTYTHLSDNPVYRV R*IE FEDVVCSPLDQLLDM
Sbjct: 466 WPFVIDVLWSHPAVMVIRLTATFRGVTYTHLSDNPVYRVGR*IECFEDVVCSPLDQLLDM 287
Query: 330 VELTDGLVPRP 362
VELTDGL+ P
Sbjct: 286 VELTDGLILSP 254
Score = 153 bits (329), Expect = 1e-036
Identities = 64/67 (95%), Positives = 65/67 (97%)
Frame = -2 / +1
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*RQQSA**PLLLDETRG 169
GHR*ARPYQGADQVGNRLHPQN+QFIC HDRQDCRSGGCR*HL*R QSA**PLLLDETRG
Sbjct: 268 GHR*ARPYQGADQVGNRLHPQNIQFICRHDRQDCRSGGCR*HL*RWQSA**PLLLDETRG 447
Query: 168 HRLQKAS 148
HRLQKAS
Sbjct: 448 HRLQKAS 468
Score = 144 bits (310), Expect = 4e-034
Identities = 68/70 (97%), Positives = 68/70 (97%)
Frame = +1 / -1
Query: 148 TGLL*SMSSGLIQQ*WSLG*LLPLEVSPTPT*ATILSIVSADELKVLRM*SVPHLISSLI 327
TGLL*SMSSGLIQQ*WSLG*L PLEVSPTPT*ATILSIVSADEL VLRM*SVPHLISSLI
Sbjct: 468 TGLL*SMSSGLIQQ*WSLG*LPPLEVSPTPT*ATILSIVSADELNVLRM*SVPHLISSLI 289
Query: 328 WSSSPMASYL 357
WSSSPMASYL
Sbjct: 288 WSSSPMASYL 259
Score = 109 bits (233), Expect = 2e-023
Identities = 53/71 (74%), Positives = 53/71 (74%)
Frame = -1 / +3
Query: 361 GRGTRPXXXXXXXXXXXSGEQTTSSKPSIHLLTR*TGLSLRWV*VTPLKAAVSLMTITAG 182
G RP SGEQTTSSK SIHL TR*TGLSLRWV*VTPLK AVSLMTITAG
Sbjct: 255 GLSMRPSVSSTISRS*SSGEQTTSSKHSIHLPTR*TGLSLRWV*VTPLKVAVSLMTITAG 434
Query: 181 *DQRTSTTKGQ 149
*DQRTS TKGQ
Sbjct: 435 *DQRTSITKGQ 467
>gb|BG054315.1|BG054315 OV2_1_B06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 438
Score = 171 bits (369), Expect = 3e-042
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / -2
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RC 226
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RC
Sbjct: 221 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RC 42
Query: 227 HLHPPERQSCLSC 265
HLHPPERQSCLSC
Sbjct: 41 HLHPPERQSCLSC 3
Score = 168 bits (361), Expect = 6e-041
Identities = 68/81 (83%), Positives = 68/81 (83%)
Frame = -3 / +2
Query: 266 DTIDRIVAQVGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXX 87
DTIDRIVAQVGVGDTSKG SQPNDHYCWMRPEDIDYKRPVTECHSCSD
Sbjct: 2 DTIDRIVAQVGVGDTSKGGSQPNDHYCWMRPEDIDYKRPVTECHSCSDLASEMAAALAAA 181
Query: 86 SIVFKDSKTYSDKLVKGAKAL 24
SIVFKDSKTYSDKLVKGAKAL
Sbjct: 182 SIVFKDSKTYSDKLVKGAKAL 244
Score = 167 bits (360), Expect = 5e-041
Identities = 69/75 (92%), Positives = 70/75 (93%)
Frame = +3 / -3
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFR 221
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FR
Sbjct: 226 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFR 47
Query: 222 GVTYTHLSDNPVYRV 266
GVTYTHLSDNPVYRV
Sbjct: 46 GVTYTHLSDNPVYRV 2
Score = 138 bits (297), Expect = 3e-032
Identities = 62/75 (82%), Positives = 62/75 (82%)
Frame = -2 / +1
Query: 264 HDRQDCRSGGCR*HL*RQQSA**PLLLDETRGHRLQKASHXXXXXXXXXX*NGCCPGCSF 85
HDRQDCRSGGCR*HL*R QSA**PLLLDETRGHRLQKASH *NGC PGCSF
Sbjct: 4 HDRQDCRSGGCR*HL*RWQSA**PLLLDETRGHRLQKASH*VSLLLRSSI*NGCRPGCSF 183
Query: 84 HSVQGQQNLLRQARQ 40
HSVQGQQNLL QARQ
Sbjct: 184 HSVQGQQNLL*QARQ 228
Score = 108 bits (231), Expect = 3e-023
Identities = 55/85 (64%), Positives = 55/85 (64%)
Frame = +1 / -1
Query: 13 PGQDRALAPXXXXXXXXXXXXNTMEXXXXXXXXXXXXXEQE*HSVTGLL*SMSSGLIQQ* 192
P RA AP NTME EQE*HSVTGLL*SMSSGLIQQ*
Sbjct: 255 PNLYRAFAPLTSLSE*VLLSLNTMEAAARAAAISDARSEQE*HSVTGLL*SMSSGLIQQ* 76
Query: 193 WSLG*LLPLEVSPTPT*ATILSIVS 267
WSLG*L PLEVSPTPT*ATILSIVS
Sbjct: 75 WSLG*LPPLEVSPTPT*ATILSIVS 1
>gb|CW485226.1|CW485226 fsbb001f247n08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247n08, DNA
sequence
Length = 740
Score = 112 bits (240), Expect(2) = 9e-042
Identities = 45/73 (61%), Positives = 48/73 (65%)
Frame = -3 / -3
Query: 242 QVGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSK 63
QVG S GS+QPND YCWMRPEDIDY RPV ECH+CSD SIVFKD+K
Sbjct: 435 QVGSAAMSPGSTQPNDQYCWMRPEDIDYPRPVVECHACSDLAAEMAAALAAASIVFKDNK 256
Query: 62 TYSDKLVKGAKAL 24
YS KLV GA L
Sbjct: 255 AYSQKLVHGATTL 217
Score = 78.5 bits (165), Expect(2) = 9e-042
Identities = 26/40 (65%), Positives = 38/40 (95%)
Frame = -3 / -3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A+GEL H++++IKWG+DY LKTFNS+AD+IDR++AQV
Sbjct: 645 KYDAVGELGHVRDIIKWGSDYFLKTFNSTADSIDRVIAQV 526
>gb|CW278251.1|CW278251 104_752_11406451_116_35644_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406451, DNA
sequence
Length = 670
Score = 112 bits (240), Expect(2) = 9e-042
Identities = 45/73 (61%), Positives = 48/73 (65%)
Frame = -3 / -2
Query: 242 QVGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSK 63
QVG S GS+QPND YCWMRPEDIDY RPV ECH+CSD SIVFKD+K
Sbjct: 363 QVGSAAMSPGSTQPNDQYCWMRPEDIDYPRPVVECHACSDLAAEMAAALAAASIVFKDNK 184
Query: 62 TYSDKLVKGAKAL 24
YS KLV GA L
Sbjct: 183 AYSQKLVHGATTL 145
Score = 78.5 bits (165), Expect(2) = 9e-042
Identities = 26/40 (65%), Positives = 38/40 (95%)
Frame = -3 / -2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A+GEL H++++IKWG+DY LKTFNS+AD+IDR++AQV
Sbjct: 573 KYDAVGELGHVRDIIKWGSDYFLKTFNSTADSIDRVIAQV 454
>gb|CW347593.1|CW347593 fsbb001f007j03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007j03, DNA
sequence
Length = 502
Score = 151 bits (324), Expect = 5e-036
Identities = 59/65 (90%), Positives = 63/65 (96%)
Frame = +2 / +1
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RC 226
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*ADC L*RC
Sbjct: 241 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH*ADCHL*RC 420
Query: 227 HLHPP 241
HLHPP
Sbjct: 421 HLHPP 435
Score = 150 bits (323), Expect = 1e-035
Identities = 60/73 (82%), Positives = 60/73 (82%)
Frame = -3 / -1
Query: 242 QVGVGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSK 63
QVGVGDTSKG SQPNDHYCWMRPEDIDYKRPVTECHSCSD SIVFKDSK
Sbjct: 436 QVGVGDTSKGGSQPNDHYCWMRPEDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSK 257
Query: 62 TYSDKLVKGAKAL 24
TYSDKLVKGAKAL
Sbjct: 256 TYSDKLVKGAKAL 218
Score = 148 bits (317), Expect = 4e-035
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +3 / +2
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIRLTAAFR 221
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIRLTA FR
Sbjct: 236 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIRLTATFR 415
Query: 222 GVTYTHL 242
GVTYTHL
Sbjct: 416 GVTYTHL 436
Score = 117 bits (250), Expect = 8e-026
Identities = 54/68 (79%), Positives = 55/68 (80%)
Frame = -2 / -3
Query: 243 SGGCR*HL*RQQSA**PLLLDETRGHRLQKASHXXXXXXXXXX*NGCCPGCSFHSVQGQQ 64
+GGCR*HL*R QSA**PLLLDETRGHRLQKASH *NGC PGCSFHSVQGQQ
Sbjct: 437 TGGCR*HL*RWQSA**PLLLDETRGHRLQKASH*VSLLLRSSI*NGCRPGCSFHSVQGQQ 258
Query: 63 NLLRQARQ 40
NLL QARQ
Sbjct: 257 NLL*QARQ 234
>gb|BE357301.1|BE357301 DG1_148_A07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 567
Score = 79.4 bits (167), Expect(2) = 1e-029
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVG 234
+Y+A+GE DH++ELIKWGTDY+L TFNSSA TID++ AQVG
Sbjct: 86 KYKAMGEYDHVRELIKWGTDYLLLTFNSSASTIDKLYAQVG 208
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 29/67 (43%), Positives = 35/67 (52%)
Frame = -3 / +2
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYS 54
VG S+P+DHYCW RPED+ Y RP S D SIVF+D+ YS
Sbjct: 203 VGSAKINGSRPDDHYCWNRPEDMAYPRPSVSVGSAPDLGGEVAAALAAASIVFRDTAAYS 382
Query: 53 DKLVKGA 33
KL +GA
Sbjct: 383 KKLSQGA 403
>gb|AW564290.1|AW564290 LG1_289_B06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 123 bits (263), Expect = 2e-027
Identities = 48/60 (80%), Positives = 48/60 (80%)
Frame = -3 / +2
Query: 203 PNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PNDHYCWMRPEDIDYKRPVTECHSCSD SIVFKDSKTYSDKLVKGAKAL
Sbjct: 2 PNDHYCWMRPEDIDYKRPVTECHSCSDLASEMAAALAAASIVFKDSKTYSDKLVKGAKAL 181
Score = 119 bits (255), Expect = 2e-026
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +2 / -3
Query: 47 ACRSRFCCP*TLWKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH* 202
AC+SRFCCP*TLWKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSSSSNGH*
Sbjct: 158 ACQSRFCCP*TLWKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSSSNGH* 3
Score = 119 bits (254), Expect = 2e-026
Identities = 49/54 (90%), Positives = 50/54 (92%)
Frame = +3 / -1
Query: 42 DELVGVGFAVLEHYGSCSQGSSHFRR*I*ARVTLGDWPFVVDVLWSHPAVMVIR 203
DELV VGFAVLEHYGSCSQG SHFR *I*ARVTL DWPFV+DVLWSHPAVMVIR
Sbjct: 163 DELVRVGFAVLEHYGSCSQGGSHFRC*I*ARVTLSDWPFVIDVLWSHPAVMVIR 2
>gb|CW284854.1|CW284854 104_761_11410019_148_35495_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410019, DNA
sequence
Length = 690
Score = 73.9 bits (155), Expect(2) = 8e-026
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A+ E DH++ELIKWGTDY+L TFNSSA TID + AQV
Sbjct: 539 KYKAVEEYDHVRELIKWGTDYLLHTFNSSASTIDHVYAQV 420
Score = 64.3 bits (134), Expect(2) = 8e-026
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = -3 / -1
Query: 212 SSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGA 33
S P+DHYCW RPED+ Y RP S D SI F+D YS KLV GA
Sbjct: 255 SRTPDDHYCWNRPEDMAYPRPSLPVTSAPDLGGEIAAALAAASIAFRDDAAYSKKLVHGA 76
>gb|CW086991.1|CW086991 104_431_10947336_114_33025_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947336, DNA
sequence
Length = 729
Score = 73.9 bits (155), Expect(2) = 8e-026
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = -3 / -2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
+Y+A+ E DH++ELIKWGTDY+L TFNSSA TID + AQV
Sbjct: 590 KYKAVEEYDHVRELIKWGTDYLLHTFNSSASTIDHVYAQV 471
Score = 64.3 bits (134), Expect(2) = 8e-026
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = -3 / -1
Query: 212 SSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGA 33
S P+DHYCW RPED+ Y RP S D SI F+D YS KLV GA
Sbjct: 306 SRTPDDHYCWNRPEDMAYPRPSLPVTSAPDLGGEIAAALAAASIAFRDDAAYSKKLVHGA 127
>gb|CW396350.1|CW396350 fsbb001f084m03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f084m03, DNA
sequence
Length = 541
Score = 67.0 bits (140), Expect(2) = 3e-024
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -3 / -2
Query: 338 ELDHIKELIKWGTDYILKTFNSSADTIDRIVAQV 237
E DH++ELIKWGTDY+L TFNSSA TID + AQV
Sbjct: 495 EYDHVRELIKWGTDYLLHTFNSSASTIDHVYAQV 394
Score = 64.3 bits (134), Expect(2) = 3e-024
Identities = 27/60 (45%), Positives = 30/60 (50%)
Frame = -3 / -1
Query: 212 SSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGA 33
S P+DHYCW RPED+ Y RP S D SI F+D YS KLV GA
Sbjct: 229 SRTPDDHYCWNRPEDMAYPRPSLPVTSAPDLGGEIAAALAAASIAFRDDAAYSKKLVHGA 50
>gb|BF587259.1|BF587259 FM1_34_B12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 271
Score = 111 bits (237), Expect = 7e-024
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = -3 / +2
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKG 213
R +YEAIGELDHIKELIKWGTDY+LKTFN SADTIDRIVAQVGVGDTSKG
Sbjct: 119 RAKYEAIGELDHIKELIKWGTDYMLKTFN*SADTIDRIVAQVGVGDTSKG 268
Score = 107 bits (228), Expect = 8e-023
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +2 / -3
Query: 215 L*RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
L*RCHLHPPERQSCLSC+Q+N* F* CSLFPT*SAP*YGRAHRWP T
Sbjct: 266 L*RCHLHPPERQSCLSCRQIN*MF*ACSLFPT*SAP*YGRAHRWPHT 126
Score = 104 bits (221), Expect = 8e-022
Identities = 41/45 (91%), Positives = 42/45 (93%)
Frame = -2 / +1
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL*R 214
GHR*ARPYQGADQVGNRLH QN+Q IC HDRQDCRSGGCR*HL*R
Sbjct: 133 GHR*ARPYQGADQVGNRLHAQNIQLICRHDRQDCRSGGCR*HL*R 267
Score = 101 bits (216), Expect = 4e-021
Identities = 43/51 (84%), Positives = 44/51 (86%)
Frame = +3 / -1
Query: 210 AAFRGVTYTHLSDNPVYRVSR*IEGFEDVVCSPLDQLLDMVELTDGLVPRP 362
A FRGVTYTHLSDNPVYRV R IE FE VVCSPLDQLLDMVELTDGL+ P
Sbjct: 271 ATFRGVTYTHLSDNPVYRVGRSIECFEHVVCSPLDQLLDMVELTDGLILSP 119
>gb|BE919008.1|BE919008 FM1_2_H09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 333
Score = 105 bits (223), Expect = 4e-022
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +2 / -3
Query: 221 RCHLHPPERQSCLSCQQMN*RF*GCSLFPT*SAP*YGRAHRWPRT 355
RCHLHPPERQSCLSC+Q+N* F* CSLFPT*SAP*YGRAHRWP T
Sbjct: 328 RCHLHPPERQSCLSCRQIN*MF*ACSLFPT*SAP*YGRAHRWPHT 194
Score = 104 bits (222), Expect = 8e-022
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = -3 / +1
Query: 362 RPRYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDT 222
R +YEAIGELDHIKELIKWGTDY+LKTFN SADTIDRIVAQVGVGDT
Sbjct: 187 RAKYEAIGELDHIKELIKWGTDYMLKTFN*SADTIDRIVAQVGVGDT 327
Score = 101 bits (216), Expect = 4e-021
Identities = 40/44 (90%), Positives = 41/44 (93%)
Frame = -2 / +3
Query: 348 GHR*ARPYQGADQVGNRLHPQNLQFIC*HDRQDCRSGGCR*HL* 217
GHR*ARPYQGADQVGNRLH QN+Q IC HDRQDCRSGGCR*HL*
Sbjct: 201 GHR*ARPYQGADQVGNRLHAQNIQLICRHDRQDCRSGGCR*HL* 332
>gb|CW183628.1|CW183628 104_599_11164715_148_36672_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164715, DNA
sequence
Length = 156
Score = 103 bits (219), Expect = 1e-021
Identities = 42/51 (82%), Positives = 47/51 (92%)
Frame = +2 / +3
Query: 83 WKLQPGQQPFQTLDLSKSDTR*LAFCSRCPLVSSSSNGH*ADCCL*RCHLH 235
WKLQPG+QPFQ LDLSKSDT+*LAFC+RCPLVSS+ NGH*A+C L*R HLH
Sbjct: 3 WKLQPGRQPFQMLDLSKSDTQ*LAFCNRCPLVSSNINGH*ANCHL*R*HLH 155
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 418,367,621
Number of Sequences: 832831
Number of extensions: 5257560
Number of successful extensions: 200719
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 51
effective length of database: 121,312,175
effective search space used: 8734476600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)