TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670899.2.1
(555 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD424081.1|CD424081 SA1_3_B08.b1_A002 Salicylic acid-tre... 345 1e-098
gb|BE358912.1|BE358912 DG1_32_A08.g1_A002 Dark Grown 1 (DG1... 194 9e-049
gb|CW055761.1|CW055761 104_297_10517314_115_30173 Sorghum m... 185 5e-046
gb|CW379945.1|CW379945 fsbb001f059h21f0 Sorghum methylation... 110 9e-039
gb|BG356747.1|BG356747 OV2_9_E02.g1_A002 Ovary 2 (OV2) Sorg... 110 9e-039
gb|CW244441.1|CW244441 104_705_11220597_148_37586_089 Sorgh... 105 2e-037
gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation... 98 5e-037
gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1... 98 5e-037
gb|CW214577.1|CW214577 104_646_11194088_148_37053_022 Sorgh... 105 8e-035
gb|CX615067.1|CX615067 GABR1_18_A03.b1_A002 GA- or brassino... 115 7e-034
gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum m... 98 1e-032
gb|CX613101.1|CX613101 GABR1_6_F08.b1_A002 GA- or brassinol... 115 2e-032
gb|CW189981.1|CW189981 104_611_11174253_116_36749_089 Sorgh... 84 1e-029
gb|BE598372.1|BE598372 PI1_81_C10.g1_A002 Pathogen induced ... 84 1e-029
gb|BZ335748.1|BZ335748 hz26f05.b1 WGS-SbicolorF (JM107 adap... 83 2e-028
gb|CW395999.1|CW395999 fsbb001f084e08f0 Sorghum methylation... 83 2e-028
gb|CW393773.1|CW393773 fsbb001f080p20f0 Sorghum methylation... 83 2e-028
gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorgh... 126 2e-028
gb|CW148228.1|CW148228 104_542_11140303_116_35002_020 Sorgh... 72 2e-026
gb|CL155701.1|CL155701 104_342_10782342_116_31474_054 Sorgh... 84 1e-025
gb|CX614455.1|CX614455 GABR1_14_E04.b1_A002 GA- or brassino... 84 1e-025
gb|CX606297.1|CX606297 ANR1_2_F04.b1_A002 Anaerobic roots S... 83 2e-025
gb|CW392882.1|CW392882 fsbb001f079l02k0 Sorghum methylation... 73 4e-025
gb|CW281620.1|CW281620 104_757_11408279_148_35457_090 Sorgh... 69 2e-024
gb|CX616823.1|CX616823 GABR1_30_D09.b1_A002 GA- or brassino... 78 7e-024
gb|CW176433.1|CW176433 104_589_11158484_116_36585_074 Sorgh... 111 9e-024
gb|CW124340.1|CW124340 104_504_11111720_116_34706_030 Sorgh... 72 8e-023
gb|CW417172.1|CW417172 fsbb001f120a20k0 Sorghum methylation... 99 3e-022
gb|CW485341.1|CW485341 fsbb001f248a13f0 Sorghum methylation... 105 5e-022
gb|CW221373.1|CW221373 104_656_11197870_116_37172_089 Sorgh... 97 1e-021
gb|CL160757.1|CL160757 104_351_10805217_116_31825_273 Sorgh... 64 3e-021
>gb|CD424081.1|CD424081 SA1_3_B08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_B08_A002 3', mRNA sequence
Length = 626
Score = 345 bits (748), Expect(3) = 1e-098
Identities = 137/148 (92%), Positives = 142/148 (95%)
Frame = -3 / +1
Query: 541 GMYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYV 362
GMYYESPTKSGEIVAVFQPSHEEQQQYTSN+HNQKALAEIYLLSYCDKITMSAWSTFGYV
Sbjct: 16 GMYYESPTKSGEIVAVFQPSHEEQQQYTSNEHNQKALAEIYLLSYCDKITMSAWSTFGYV 195
Query: 361 AYSFAGVKPWILIRPDWNRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVR 182
AYSFAGVKPWIL+RPDWNRETSDVACVRSTS+EPCLHSPPILGCRAK DVDVAAVKPYVR
Sbjct: 196 AYSFAGVKPWILLRPDWNRETSDVACVRSTSMEPCLHSPPILGCRAKRDVDVAAVKPYVR 375
Query: 181 HCEDVGFGLKLFDS*LSQWTYSSTIQLF 98
HCEDVGFGLKLFDS*LS+WT + LF
Sbjct: 376 HCEDVGFGLKLFDS*LSEWTLDDPVPLF 459
Score = 313 bits (678), Expect(2) = 8e-088
Identities = 134/140 (95%), Positives = 135/140 (96%)
Frame = +3 / -1
Query: 123 VH*ES*LSNNLRPKPTSSQCRTYGLTAATSTSVLALHPRIGGECRHGSTDVDRTHATSEV 302
VH ES*LSNNLRPKPTSSQCRTYGLTAATSTS+LALHPRIGGECRHGS DVDRTHATSEV
Sbjct: 434 VHSES*LSNNLRPKPTSSQCRTYGLTAATSTSLLALHPRIGGECRHGSMDVDRTHATSEV 255
Query: 303 SLFQSGRIRIHGFTPAKLYAT*PKVDQALIVILSQ*LSR*ISASAFWLWSLDVYCCCSSW 482
SLFQSGR RIHGFTPAKLYAT*PKVDQALIVILSQ*LSR*ISASAFWL S DVYCCCSSW
Sbjct: 254 SLFQSGRSRIHGFTPAKLYAT*PKVDQALIVILSQ*LSR*ISASAFWLCSFDVYCCCSSW 75
Query: 483 LGWNTATISPLLVGLS*YMP 542
LGWNTATISPLLVGLS*YMP
Sbjct: 74 LGWNTATISPLLVGLS*YMP 15
Score = 217 bits (468), Expect(3) = 3e-076
Identities = 93/98 (94%), Positives = 94/98 (95%)
Frame = +2 / -3
Query: 122 RPLRELAIEQLEAEADVLAVPDVRLDSGDVDVRLGPAPEDRRRVQARLHGRGPDARDVGG 301
RPLRELAIEQLEAEADVLAVPDVRLDSG VDV LG APEDRRRVQARLHGRGPDAR VGG
Sbjct: 435 RPLRELAIEQLEAEADVLAVPDVRLDSGYVDVPLGSAPEDRRRVQARLHGRGPDARHVGG 256
Query: 302 LPVPVRPDQDPRLHAGEAVRDVAEGGPGAHRDLVAVAE 415
LPVPVRP+QDPRLHAGEAVRDVAEGGPGAHRDLVAVAE
Sbjct: 255 LPVPVRPEQDPRLHAGEAVRDVAEGGPGAHRDLVAVAE 142
Score = 178 bits (384), Expect(4) = 1e-052
Identities = 78/100 (78%), Positives = 80/100 (80%)
Frame = -2 / +3
Query: 542 RHVLREPHQEWGDRGGVPAQPRGAAAVHVQRPQPEGAGRDLPAQLLRQDHDEXXXXXXXX 363
RHVLREPHQE GDRGGVPA+PRGAAAVHV+R QPEGAG DLPAQLLRQDHDE
Sbjct: 15 RHVLREPHQERGDRGGVPAEPRGAAAVHVERAQPEGAGGDLPAQLLRQDHDERLVHLRLR 194
Query: 362 XXXXXXREAVDPDPAGLEQGDLRRRVRPVHVRGAVPALAA 243
REAVDP PAGLEQGDLRR VRPVHV GAVPALAA
Sbjct: 195 RVQLRRREAVDPAPAGLEQGDLRRGVRPVHVHGAVPALAA 314
Score = 79.0 bits (166), Expect(3) = 3e-076
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1 / -2
Query: 445 CGRWTCTAAAPRGWAGTPPRSPHSWWGSRSTCR 543
C R TCTAAAPRG AGTPPRSP SWWGSRSTCR
Sbjct: 112 CARSTCTAAAPRGSAGTPPRSPRSWWGSRSTCR 14
Score = 35.4 bits (71), Expect(4) = 1e-052
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -2 / +3
Query: 173 GRRLRPQVVR*LTLSVDVQ 117
GRRLRPQVVR*LTL VD +
Sbjct: 384 GRRLRPQVVR*LTL*VDAR 440
Score = 31.8 bits (63), Expect(2) = 8e-088
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / -2
Query: 25 YRLNEYNESRNA* 63
YR+NEYNESRNA*
Sbjct: 538 YRINEYNESRNA* 500
Score = 30.4 bits (60), Expect(3) = 1e-098
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +1
Query: 61 RHFEIRCIRLSG 26
RHFEIRCIRL G
Sbjct: 502 RHFEIRCIRLCG 537
Score = 29.5 bits (58), Expect(3) = 3e-076
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2 / -3
Query: 26 TA*TNTTNLEMP 61
TA*TNTTNLEMP
Sbjct: 537 TA*TNTTNLEMP 502
Score = 26.3 bits (51), Expect(4) = 1e-052
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2 / +3
Query: 62 *AFRDSLYSFKR 27
*AFRDSLYSF R
Sbjct: 501 *AFRDSLYSFMR 536
Score = 24.4 bits (47), Expect(3) = 1e-098
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3 / +3
Query: 118 SSTIQLFSELRVWPV 74
SS++ + +ELR WPV
Sbjct: 447 SSSVLMSNELRTWPV 491
Score = 23.5 bits (45), Expect(4) = 1e-052
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1 / +1
Query: 96 LNCVSGLWS 70
+NCV GLWS
Sbjct: 469 MNCVPGLWS 495
>gb|BE358912.1|BE358912 DG1_32_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 194 bits (418), Expect = 9e-049
Identities = 75/132 (56%), Positives = 99/132 (75%)
Frame = -3 / +3
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
+YY + T +GE+V V+QPSH++ Q + HN++ALAEI+LLSY D++ + +STFGYVA
Sbjct: 177 VYYTNATATGEVVTVYQPSHDQDQHTEARAHNERALAEIFLLSYSDRLVTTGFSTFGYVA 356
Query: 358 YSFAGVKPWILIRPDWNRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRH 179
+S AG++PW+L+ PD + VACVR SVEPCLHS P L CRA+ DVD A P++RH
Sbjct: 357 HSLAGLRPWLLMLPDRTTNRAAVACVRPASVEPCLHSLPSLVCRAEQDVDPVAHLPFLRH 536
Query: 178 CEDVGFGLKLFD 143
CEDVG GLKLFD
Sbjct: 537 CEDVGLGLKLFD 572
Score = 135 bits (289), Expect = 6e-031
Identities = 67/131 (51%), Positives = 80/131 (61%)
Frame = +3 / -1
Query: 144 SNNLRPKPTSSQCRTYGLTAATSTSVLALHPRIGGECRHGSTDVDRTHATSEVSLFQSGR 323
SN+LRP+PTSSQCR G A STS A G ECRHGSTD T AT+ + + +SG
Sbjct: 571 SNSLRPRPTSSQCRRNGRCATGSTSCSARQTSDGSECRHGSTDAGLTQATAALFVVRSGS 392
Query: 324 IRIHGFTPAKLYAT*PKVDQALIVILSQ*LSR*ISASAFWLWSLDVYCCCSSWLGWNTAT 503
I HG +PA AT*P V+ ++ LS+*LSR ISA A L + C SWLGW T T
Sbjct: 391 ISSHGRSPASECAT*PNVENPVVTNLSE*LSRKISARARSLCARASVCWSWSWLGWYTVT 212
Query: 504 ISPLLVGLS*Y 536
SP+ V L *Y
Sbjct: 211 TSPVAVALV*Y 179
>gb|CW055761.1|CW055761 104_297_10517314_115_30173 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517314, DNA
sequence
Length = 482
Score = 185 bits (398), Expect = 5e-046
Identities = 73/132 (55%), Positives = 95/132 (71%)
Frame = -3 / -1
Query: 541 GMYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYV 362
G+YY +PT++GE V V QPSHE +Q+ + HNQ+ALAE+YLLS+CD+I SA STFGY+
Sbjct: 464 GVYYATPTETGEYVEVHQPSHEGEQRTEARAHNQRALAEMYLLSFCDRIVTSAVSTFGYI 285
Query: 361 AYSFAGVKPWILIRPDWNRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVR 182
A+ AGV+PW+L+RP +D ACV+S +VEPCL +PP C A D+ A+ PY R
Sbjct: 284 AHGLAGVRPWVLLRPPSPETHADPACVQSKTVEPCLQAPPRQICGAAEGTDIGALVPYAR 105
Query: 181 HCEDVGFGLKLF 146
HCED GLKLF
Sbjct: 104 HCEDEHKGLKLF 69
Score = 115 bits (245), Expect = 7e-025
Identities = 63/132 (47%), Positives = 71/132 (53%)
Frame = +3 / +1
Query: 147 NNLRPKPTSSQCRTYGLTAATSTSVLALHPRIGGECRHGSTDVDRTHATSEVSLFQSGRI 326
NNLRP +SSQCR G A S A GG R GST D THA S GR
Sbjct: 70 NNLRPLCSSSQCRA*GTRAPMSVPSAAPQICRGGA*RQGSTVFD*THAGSACVSGDGGRS 249
Query: 327 RIHGFTPAKLYAT*PKVDQALIVILSQ*LSR*ISASAFWLWSLDVYCCCSSWLGWNTATI 506
G TPA A P VD AL+ + SQ LSR ISA A WL + C SWLGW T+T
Sbjct: 250 STQGRTPASPCAMYPNVDTALVTMRSQKLSRYISARALWLCARASVRCSPSWLGWCTSTY 429
Query: 507 SPLLVGLS*YMP 542
SP+ VG++*Y P
Sbjct: 430 SPVSVGVA*YTP 465
>gb|CW379945.1|CW379945 fsbb001f059h21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f059h21, DNA
sequence
Length = 715
Score = 110 bits (235), Expect(2) = 9e-039
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = -3 / -3
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY+E PT+SGEI++ QPSHEE Q HN KALAEIYLLS D + SAWSTFGYVA
Sbjct: 551 MYWEHPTESGEIISFHQPSHEEHQDSDKKMHNMKALAEIYLLSLSDVMVTSAWSTFGYVA 372
Query: 358 YSFAGVKPWILIRPD 314
+G K W++ +P+
Sbjct: 371 QGLSGSKTWLMFKPE 327
Score = 70.7 bits (148), Expect(2) = 9e-039
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -3 / -3
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFDS 140
NR + C + S+EPC H+PP C+ + D + P+VRHCED+ +GLKL D+
Sbjct: 326 NRTAPNPPCRQVMSIEPCFHAPPFYDCKTRKGTDTGKLVPHVRHCEDMSWGLKLVDT 156
>gb|BG356747.1|BG356747 OV2_9_E02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 535
Score = 110 bits (235), Expect(2) = 9e-039
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = -3 / +1
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY+E PT+SGEI++ QPSHEE Q HN KALAEIYLLS D + SAWSTFGYVA
Sbjct: 46 MYWEHPTESGEIISFHQPSHEEHQDSDKKMHNMKALAEIYLLSLSDVMVTSAWSTFGYVA 225
Query: 358 YSFAGVKPWILIRPD 314
+G K W++ +P+
Sbjct: 226 QGLSGSKTWLMFKPE 270
Score = 70.7 bits (148), Expect(2) = 9e-039
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = -3 / +1
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFDS 140
NR + C + S+EPC H+PP C+ + D + P+VRHCED+ +GLKL D+
Sbjct: 271 NRTAPNPPCRQVMSIEPCFHAPPFYDCKTRKGTDTGKLVPHVRHCEDMSWGLKLVDT 441
>gb|CW244441.1|CW244441 104_705_11220597_148_37586_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220597, DNA
sequence
Length = 629
Score = 105 bits (224), Expect(2) = 2e-037
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = -3 / -2
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
Y++S T +GE+V+V+QPSHEE Q H+ KA+AE+YLL DKI S WSTFGYV +
Sbjct: 421 YWQSATATGEVVSVYQPSHEEHQLSGYTTHDMKAVAEMYLLGMTDKIVTSGWSTFGYVGH 242
Query: 355 SFAGVKPWILIRPD 314
G+ PWI+ RP+
Sbjct: 241 GLGGLTPWIMFRPE 200
Score = 71.2 bits (149), Expect(2) = 2e-037
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = -3 / -2
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
N T C R+ S+EPC+H PP CRAK D + P+V+HCED+ +GLKL
Sbjct: 199 NHTTPYPPCRRAKSMEPCMHGPPFYDCRAKHGADTGKLVPHVQHCEDMSWGLKL 38
>gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007c05, DNA
sequence
Length = 738
Score = 98.2 bits (208), Expect(2) = 5e-037
Identities = 40/74 (54%), Positives = 49/74 (66%)
Frame = -3 / +1
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
Y E P G V VFQPSHEE Q+ + HN KALAEIYLLS D++ S +STFGY A
Sbjct: 94 YDEQPAVDGITVKVFQPSHEEYQRSRNKKHNMKALAEIYLLSMSDELITSGFSTFGYAAQ 273
Query: 355 SFAGVKPWILIRPD 314
AG+KPWI+ + +
Sbjct: 274 GLAGLKPWIMFKSE 315
Score = 77.1 bits (162), Expect(2) = 5e-037
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -3 / +1
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
N D C R+ S+EPC H P C+AK D D+ V PYVRHCEDV +GLK+
Sbjct: 316 NHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGKVVPYVRHCEDVSWGLKI 477
>gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 98.2 bits (208), Expect(2) = 5e-037
Identities = 40/74 (54%), Positives = 49/74 (66%)
Frame = -3 / +2
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
Y E P G V VFQPSHEE Q+ + HN KALAEIYLLS D++ S +STFGY A
Sbjct: 29 YDEQPAVDGITVKVFQPSHEEYQRSRNKKHNMKALAEIYLLSMSDELITSGFSTFGYAAQ 208
Query: 355 SFAGVKPWILIRPD 314
AG+KPWI+ + +
Sbjct: 209 GLAGLKPWIMFKSE 250
Score = 77.1 bits (162), Expect(2) = 5e-037
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = -3 / +2
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
N D C R+ S+EPC H P C+AK D D+ V PYVRHCEDV +GLK+
Sbjct: 251 NHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADLGKVVPYVRHCEDVSWGLKI 412
>gb|CW214577.1|CW214577 104_646_11194088_148_37053_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194088, DNA
sequence
Length = 669
Score = 105 bits (224), Expect(2) = 8e-035
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = -3 / -2
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
Y++S T +GE+V+V+QPSHEE Q H+ KA+AE+YLL DKI S WSTFGYV +
Sbjct: 374 YWQSATATGEVVSVYQPSHEEHQLSGYTTHDMKAVAEMYLLGMTDKIVTSGWSTFGYVGH 195
Query: 355 SFAGVKPWILIRPD 314
G+ PWI+ RP+
Sbjct: 194 GLGGLTPWIMFRPE 153
Score = 62.5 bits (130), Expect(2) = 8e-035
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = -3 / -2
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGF 161
N T C R+ S+EPC+H PP CRAK D + P+V+HCED+ +
Sbjct: 152 NHTTPYPPCRRAKSMEPCMHGPPFYDCRAKHGADTGKLVPHVQHCEDMSW 3
>gb|CX615067.1|CX615067 GABR1_18_A03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_18_A03_A002 3', mRNA sequence
Length = 733
Score = 115 bits (245), Expect(3) = 7e-034
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = -3 / +2
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY++S T GE+V++FQPSHEE QQ+ N H+ KA AEIYLLS DKI SAWSTFGYV
Sbjct: 92 MYWKSATVDGEVVSLFQPSHEEHQQWYHNKHDMKAAAEIYLLSLTDKIVTSAWSTFGYVG 271
Query: 358 YSFAGVKPWILIRPD 314
Y+ G++P+++ P+
Sbjct: 272 YAMGGLRPYLMFMPE 316
Score = 34.1 bits (68), Expect(3) = 7e-034
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3 / +2
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAK 221
N+ D C R+ S+EPC H P C K
Sbjct: 317 NQTAPDPPCTRAMSMEPCSHGAPSFECTRK 406
Score = 33.6 bits (67), Expect(3) = 7e-034
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3 / +2
Query: 220 TDVDVAAVKPYVRHCEDVGFGLKLFD 143
T ++ + P+VR CED+ +GLKL D
Sbjct: 416 TIINTGILLPHVRACEDISWGLKLTD 493
>gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 716
Score = 98.2 bits (208), Expect(3) = 1e-032
Identities = 40/74 (54%), Positives = 49/74 (66%)
Frame = -3 / +3
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
Y E P G V VFQPSHEE Q+ + HN KALAEIYLLS D++ S +STFGY A
Sbjct: 324 YDEQPAVDGITVKVFQPSHEEYQRSRNKKHNMKALAEIYLLSMSDELITSGFSTFGYAAQ 503
Query: 355 SFAGVKPWILIRPD 314
AG+KPWI+ + +
Sbjct: 504 GLAGLKPWIMFKSE 545
Score = 43.2 bits (88), Expect(3) = 1e-032
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3 / +3
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDV 206
N D C R+ S+EPC H P C+AK D D+
Sbjct: 546 NHVMPDPPCGRAMSIEPCFHQAPFYDCKAKKDADL 650
Score = 37.3 bits (75), Expect(3) = 1e-032
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3 / +2
Query: 199 VKPYVRHCEDVGFGLKL 149
V PYVRHCEDV +GLK+
Sbjct: 656 VVPYVRHCEDVSWGLKI 706
>gb|CX613101.1|CX613101 GABR1_6_F08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_F08_A002 3', mRNA sequence
Length = 761
Score = 115 bits (245), Expect(3) = 2e-032
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = -3 / +1
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY++S T GE+V++FQPSHEE QQ+ N H+ KA AEIYLLS DKI SAWSTFGYV
Sbjct: 118 MYWKSATVDGEVVSLFQPSHEEHQQWYHNKHDMKAAAEIYLLSLTDKIVTSAWSTFGYVG 297
Query: 358 YSFAGVKPWILIRPD 314
Y+ G++P+++ P+
Sbjct: 298 YAMGGLRPYLMFMPE 342
Score = 34.1 bits (68), Expect(3) = 2e-032
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3 / +1
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAK 221
N+ D C R+ S+EPC H P C K
Sbjct: 343 NQTAPDPPCTRAMSMEPCSHGAPSFECTRK 432
Score = 28.6 bits (56), Expect(3) = 2e-032
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3 / +1
Query: 220 TDVDVAAVKPYVRHCEDVGFGLKLFD 143
T ++ + P+VR ED+ +GLKL D
Sbjct: 442 TIINTGILLPHVRAWEDISWGLKLTD 519
>gb|CW189981.1|CW189981 104_611_11174253_116_36749_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174253, DNA
sequence
Length = 706
Score = 83.5 bits (176), Expect(2) = 1e-029
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -3 / -2
Query: 496 VFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
V QPSHE +Q++ H+ KAL+E+YLLS CD + S +STFGYVA G++PW++ RP
Sbjct: 567 VHQPSHEGRQRWRDEAHDVKALSEMYLLSMCDVLVTSGFSTFGYVAQGLGGLQPWVMSRP 388
Score = 67.0 bits (140), Expect(2) = 1e-029
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -3 / -2
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DVD+ V PY+R C DV +G+KL
Sbjct: 339 CQRALSVEPCFHSPSYYNCTVRRDVDLDKVTPYIRRCVDVSWGIKL 202
>gb|BE598372.1|BE598372 PI1_81_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 606
Score = 83.5 bits (176), Expect(2) = 1e-029
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -3 / +3
Query: 496 VFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
V QPSHE +Q++ H+ KAL+E+YLLS CD + S +STFGYVA G++PW++ RP
Sbjct: 144 VHQPSHEGRQRWRDEAHDVKALSEMYLLSMCDVLVTSGFSTFGYVAQGLGGLQPWVMSRP 323
Score = 67.0 bits (140), Expect(2) = 1e-029
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -3 / +3
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DVD+ V PY+R C DV +G+KL
Sbjct: 372 CQRALSVEPCFHSPSYYNCTVRRDVDLDKVTPYIRRCVDVSWGIKL 509
>gb|BZ335748.1|BZ335748 hz26f05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz26f05 5', DNA sequence
Length = 641
Score = 82.6 bits (174), Expect(2) = 2e-028
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -3 / -3
Query: 496 VFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
V QPSHE +Q+ + H+ KAL+E+YLLS CD + S +STFGYVA G++PW++ RP
Sbjct: 564 VHQPSHEGRQRLRNEAHDVKALSEMYLLSMCDVLVTSGFSTFGYVAQGLGGLQPWVMSRP 385
Score = 64.3 bits (134), Expect(2) = 2e-028
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3 / -3
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DV++ V PY+R C DV +G+KL
Sbjct: 336 CQRALSVEPCFHSPSSYDCTVRRDVELDKVTPYIRRCVDVSWGIKL 199
>gb|CW395999.1|CW395999 fsbb001f084e08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f084e08, DNA
sequence
Length = 619
Score = 82.6 bits (174), Expect(2) = 2e-028
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -3 / +1
Query: 496 VFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
V QPSHE +Q+ + H+ KAL+E+YLLS CD + S +STFGYVA G++PW++ RP
Sbjct: 97 VHQPSHEGRQRLRNEAHDVKALSEMYLLSMCDVLVTSGFSTFGYVAQGLGGLQPWVMSRP 276
Score = 64.3 bits (134), Expect(2) = 2e-028
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3 / +1
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DV++ V PY+R C DV +G+KL
Sbjct: 325 CQRALSVEPCFHSPSSYDCTVRRDVELDKVTPYIRRCVDVSWGIKL 462
>gb|CW393773.1|CW393773 fsbb001f080p20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080p20, DNA
sequence
Length = 610
Score = 82.6 bits (174), Expect(2) = 2e-028
Identities = 31/60 (51%), Positives = 43/60 (71%)
Frame = -3 / -2
Query: 496 VFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
V QPSHE +Q+ + H+ KAL+E+YLLS CD + S +STFGYVA G++PW++ RP
Sbjct: 552 VHQPSHEGRQRLRNEAHDVKALSEMYLLSMCDVLVTSGFSTFGYVAQGLGGLQPWVMSRP 373
Score = 64.3 bits (134), Expect(2) = 2e-028
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3 / -2
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DV++ V PY+R C DV +G+KL
Sbjct: 324 CQRALSVEPCFHSPSSYDCTVRRDVELDKVTPYIRRCVDVSWGIKL 187
>gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405650, DNA
sequence
Length = 613
Score = 126 bits (270), Expect = 2e-028
Identities = 48/101 (47%), Positives = 64/101 (63%)
Frame = -3 / +3
Query: 541 GMYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYV 362
G+Y++ T +GE V+V QPSHE QQQY H+ +A AE+YLLS CD + S WSTFGYV
Sbjct: 303 GLYWDRATATGEDVSVHQPSHEGQQQYGKKSHDDRAWAEMYLLSLCDVLVTSGWSTFGYV 482
Query: 361 AYSFAGVKPWILIRPDWNRETSDVACVRSTSVEPCLHSPPI 239
A G+ PW+L +P + C R S+EPC H+P +
Sbjct: 483 AQGIGGMTPWVLHKPTNVTSPPEPPCFRDMSMEPCFHAPHV 605
>gb|CW148228.1|CW148228 104_542_11140303_116_35002_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140303, DNA
sequence
Length = 614
Score = 72.1 bits (151), Expect(2) = 2e-026
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = -3 / -3
Query: 361 AYSFAGVKPWILIRPDWNRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVR 182
A G+ W++ RPD + D C R S+EPC H+PP R K D + P V+
Sbjct: 285 AQGLGGLTLWVMYRPDNDTHVPDPPCGRDVSMEPCFHAPPFYDGRLKRGADTGKIVPQVQ 106
Query: 181 HCEDVGFGLKL 149
HC D+ +GL++
Sbjct: 105 HCIDMSWGLEI 73
Score = 67.5 bits (141), Expect(2) = 2e-026
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -3 / -3
Query: 502 VAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
V+ QPSHEE Q++ + H+ KA AE+YLLS D + +AWSTFGYVA
Sbjct: 429 VSGHQPSHEELQRFGAKSHDAKAWAEMYLLSLTDALVTTAWSTFGYVA 286
>gb|CL155701.1|CL155701 104_342_10782342_116_31474_054 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782342, DNA
sequence
Length = 720
Score = 83.5 bits (176), Expect(2) = 1e-025
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -3 / -1
Query: 511 GEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPW 332
G V+V+QP+H Q+ +HNQKALAE+ LLS+ D + SA STFGYV AG++PW
Sbjct: 483 GGAVSVYQPTHLGSQRSGEREHNQKALAEMVLLSFSDAVVTSAASTFGYVGQGLAGLRPW 304
Query: 331 ILIRP 317
+L P
Sbjct: 303 VLTSP 289
Score = 53.8 bits (111), Expect(2) = 1e-025
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -3 / -1
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFD 143
+++ D C R+ ++EPC H P CRAK D ++RHCED G++L +
Sbjct: 285 DKKAPDTPCRRAATMEPCFHVPLDYDCRAKAKGDAGRRVRHIRHCEDFPQGVQLLE 118
>gb|CX614455.1|CX614455 GABR1_14_E04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_14_E04_A002 3', mRNA sequence
Length = 584
Score = 83.5 bits (176), Expect(2) = 1e-025
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -3 / +1
Query: 511 GEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPW 332
G V+V+QP+H Q+ +HNQKALAE+ LLS+ D + SA STFGYV AG++PW
Sbjct: 106 GGAVSVYQPTHLGSQRSGEREHNQKALAEMVLLSFSDAVVTSAASTFGYVGQGLAGLRPW 285
Query: 331 ILIRP 317
+L P
Sbjct: 286 VLTSP 300
Score = 53.8 bits (111), Expect(2) = 1e-025
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -3 / +1
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFD 143
+++ D C R+ ++EPC H P CRAK D ++RHCED G++L +
Sbjct: 304 DKKAPDTPCRRAATMEPCFHVPLDYDCRAKAKGDAGRRVRHIRHCEDFPQGVQLLE 471
>gb|CX606297.1|CX606297 ANR1_2_F04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_2_F04_A002 3', mRNA sequence
Length = 684
Score = 83.1 bits (175), Expect(2) = 2e-025
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = -3 / +2
Query: 511 GEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPW 332
G V+V+QP+H Q+ +HNQKALAE+ LLS+ D + SA STFGYV AG++PW
Sbjct: 134 GGAVSVYQPTHLGSQRSGEREHNQKALAEMVLLSFSDAVVTSAPSTFGYVGQGLAGLRPW 313
Query: 331 ILIRP 317
+L P
Sbjct: 314 VLTSP 328
Score = 53.8 bits (111), Expect(2) = 2e-025
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -3 / +2
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFD 143
+++ D C R+ ++EPC H P CRAK D ++RHCED G++L +
Sbjct: 332 DKKAPDTPCRRAATMEPCFHVPLDYDCRAKAKGDAGRRVRHIRHCEDFPQGVQLLE 499
>gb|CW392882.1|CW392882 fsbb001f079l02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079l02, DNA
sequence
Length = 518
Score = 73.0 bits (153), Expect(2) = 4e-025
Identities = 26/60 (43%), Positives = 36/60 (60%)
Frame = -3 / -3
Query: 304 ETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFDS*LSQW 125
+ D+ C R+ SVEPC H+P C A +VD+ V PY+ HC DV +G+KL + QW
Sbjct: 360 DQGDLPCRRAVSVEPCFHAPSAYDCAAAREVDLDKVSPYISHCVDVKYGIKLVNESSGQW 181
Score = 62.5 bits (130), Expect(2) = 4e-025
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3 / -3
Query: 439 KALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIR 320
KAL+E+YLLS CD + S +STFGYVA AG++PW++ R
Sbjct: 516 KALSEMYLLSMCDVLVTSGFSTFGYVAQGLAGLRPWVMPR 397
>gb|CW281620.1|CW281620 104_757_11408279_148_35457_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408279, DNA
sequence
Length = 476
Score = 68.9 bits (144), Expect(2) = 2e-024
Identities = 25/51 (49%), Positives = 37/51 (72%)
Frame = -3 / -2
Query: 469 QQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
Q+ + H+ KAL+E+YLLS CD + S++STFGYVA G++PW++ RP
Sbjct: 475 QRLRNEAHDVKALSEMYLLSMCDVLVTSSFSTFGYVAQGLGGLQPWVMSRP 323
Score = 64.3 bits (134), Expect(2) = 2e-024
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -3 / -2
Query: 286 CVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
C R+ SVEPC HSP C + DV++ V PY+R C DV +G+KL
Sbjct: 274 CQRALSVEPCFHSPSSYDCTVRRDVELDKVTPYIRRCVDVSWGIKL 137
>gb|CX616823.1|CX616823 GABR1_30_D09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_30_D09_A002 3', mRNA sequence
Length = 603
Score = 77.6 bits (163), Expect(2) = 7e-024
Identities = 30/59 (50%), Positives = 40/59 (67%)
Frame = -3 / +3
Query: 493 FQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
+QP+H Q+ +HNQKALAE+ LLS+ D + SA STFGYV AG++PW+L P
Sbjct: 27 YQPTHLGTQRSGEREHNQKALAEMVLLSFSDAVVTSAASTFGYVGQGLAGLRPWVLTSP 203
Score = 53.8 bits (111), Expect(2) = 7e-024
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = -3 / +3
Query: 310 NRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFD 143
+++ D C R+ ++EPC H P CRAK D ++RHCED G++L +
Sbjct: 207 DKKAPDTPCRRAATMEPCFHVPLDYDCRAKAKGDAGRRVRHIRHCEDFPQGVQLLE 374
>gb|CW176433.1|CW176433 104_589_11158484_116_36585_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158484, DNA
sequence
Length = 563
Score = 111 bits (237), Expect = 9e-024
Identities = 42/71 (59%), Positives = 55/71 (77%)
Frame = -3 / +1
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY++S T GE+V++FQPSHEE QQ+ N H+ KA AEIYLLS DKI SAWSTFGYV
Sbjct: 349 MYWKSATVDGEVVSLFQPSHEEHQQWYHNKHDMKAAAEIYLLSLTDKIVTSAWSTFGYVG 528
Query: 358 YSFAGVKPWIL 326
Y+ G++P+++
Sbjct: 529 YAMGGLRPYLM 561
>gb|CW124340.1|CW124340 104_504_11111720_116_34706_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111720, DNA
sequence
Length = 386
Score = 71.6 bits (150), Expect(2) = 8e-023
Identities = 31/62 (50%), Positives = 39/62 (62%)
Frame = -3 / -1
Query: 328 LIRPDWNRETSDVACVRSTSVEPCLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKL 149
L+ P N+ + VR+ S+EPC H+PP CRAKT+ D+ AV VR EDV GLKL
Sbjct: 230 LLLPPTNQTVAHPPSVRAMSMEPCFHAPPTYDCRAKTNGDLGAVLRCVRRSEDVDGGLKL 51
Query: 148 FD 143
FD
Sbjct: 50 FD 45
Score = 55.6 bits (115), Expect(2) = 8e-023
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = -3 / -1
Query: 445 NQKALAEIYLLSYCDKITMSAWSTFGYVAYSFAGVKPWILIRP 317
N K + E++LLS CD +S ST GYV + AGV PW+L+ P
Sbjct: 344 NHKVMVEMFLLS*CDVSVVSGSSTVGYVGHGLAGVSPWLLLPP 216
>gb|CW417172.1|CW417172 fsbb001f120a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120a20, DNA
sequence
Length = 773
Score = 99.1 bits (210), Expect(2) = 3e-022
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = -3 / -1
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
YY K GE VAVFQPSHEEQQ + HNQ+ALAEIYLLS+ +++ S STFGYV+
Sbjct: 563 YYVHAAKGGERVAVFQPSHEEQQATANMAHNQRALAEIYLLSFSEELLTSGTSTFGYVSS 384
Query: 355 SFAGVKPWILI 323
+ AGV+P IL+
Sbjct: 383 NLAGVRPTILL 351
Score = 26.7 bits (52), Expect(2) = 3e-022
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3 / -1
Query: 313 WNRETSDVACVRSTSVEPCLHSPP 242
+ + D C R+ S+EPC +PP
Sbjct: 344 YGHKVPDPPCRRAVSMEPCNLTPP 273
>gb|CW485341.1|CW485341 fsbb001f248a13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f248a13, DNA
sequence
Length = 700
Score = 105 bits (224), Expect = 5e-022
Identities = 42/71 (59%), Positives = 50/71 (70%)
Frame = -3 / -3
Query: 538 MYYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVA 359
MY+E PT+SGEI++ QPSHEE Q HN KALAEIYLLS D + SAWSTFGYVA
Sbjct: 233 MYWEHPTESGEIISFHQPSHEEHQDSDKKMHNMKALAEIYLLSLSDVMVTSAWSTFGYVA 54
Query: 358 YSFAGVKPWIL 326
+G K W++
Sbjct: 53 QGLSGSKTWLI 21
>gb|CW221373.1|CW221373 104_656_11197870_116_37172_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197870, DNA
sequence
Length = 690
Score = 97.3 bits (206), Expect(2) = 1e-021
Identities = 41/71 (57%), Positives = 52/71 (73%)
Frame = -3 / -3
Query: 535 YYESPTKSGEIVAVFQPSHEEQQQYTSNDHNQKALAEIYLLSYCDKITMSAWSTFGYVAY 356
YY K GE VAVFQPSHEE+Q + HNQ+ALAEIYLLS+ +++ S STFGYV+
Sbjct: 490 YYVHAAKGGERVAVFQPSHEERQATANMAHNQRALAEIYLLSFSEELLTSGTSTFGYVSS 311
Query: 355 SFAGVKPWILI 323
+ AGV+P IL+
Sbjct: 310 NLAGVRPTILL 278
Score = 26.7 bits (52), Expect(2) = 1e-021
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3 / -3
Query: 313 WNRETSDVACVRSTSVEPCLHSPP 242
+ + D C R+ S+EPC +PP
Sbjct: 271 YGHKVPDPPCRRAVSMEPCNLTPP 200
>gb|CL160757.1|CL160757 104_351_10805217_116_31825_273 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805217, DNA
sequence
Length = 659
Score = 64.3 bits (134), Expect(3) = 3e-021
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = -3 / -3
Query: 259 CLHSPPILGCRAKTDVDVAAVKPYVRHCEDVGFGLKLFD 143
CL SPP L CRA+ D++ A P++RHCED+ FGLKLFD
Sbjct: 495 CLRSPPSLVCRAEQDLNPVAHLPFLRHCEDLDFGLKLFD 379
Score = 37.7 bits (76), Expect(3) = 3e-021
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3 / -3
Query: 322 RPDWNRETSDVACVRSTSVEPCL 254
RPD ++ + VACVR+ SVEPCL
Sbjct: 564 RPDRTKKRAAVACVRAASVEPCL 496
Score = 37.7 bits (76), Expect(3) = 3e-021
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -3 / -2
Query: 373 FGYVAYSFAGVKPWILIRP 317
FGYVA+S AG++PW+L+ P
Sbjct: 619 FGYVAHSLAGLRPWLLMLP 563
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 630,937,359
Number of Sequences: 832831
Number of extensions: 8933643
Number of successful extensions: 187866
Number of sequences better than 1.0e-020: 33
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15673693203
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)