TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.387
(908 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated... 342 4e-093
gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorgh... 205 2e-090
gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1... 259 4e-086
gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorgh... 190 3e-079
gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced ... 190 3e-076
gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation... 143 2e-075
gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorgh... 185 4e-075
gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced ... 190 2e-068
gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkal... 164 7e-065
gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation... 162 2e-064
gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adap... 143 1e-059
gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1... 190 1e-059
gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1... 217 2e-055
gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stresse... 171 8e-054
gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced ... 171 2e-053
gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation... 149 6e-051
gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkal... 124 4e-049
gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation... 149 2e-046
gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stres... 114 7e-046
gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stres... 149 1e-044
gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation... 109 2e-044
gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorgh... 164 7e-043
gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkal... 143 3e-042
gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced ... 116 7e-042
gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkal... 91 3e-038
gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorgh... 130 9e-036
gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation... 100 4e-035
gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum met... 94 6e-035
gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum b... 123 7e-034
gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkal... 122 4e-030
gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation... 70 4e-029
gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorgh... 86 2e-028
gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1... 81 3e-028
gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinol... 81 3e-028
gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots ... 81 3e-028
gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorgh... 89 3e-028
gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorgh... 100 9e-027
gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds 76 8e-025
gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/c... 76 8e-025
gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/c... 76 8e-025
gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/ce... 76 8e-025
gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds 76 1e-024
gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 ... 76 1e-024
gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/c... 76 1e-024
gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (... 76 1e-024
gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum m... 81 1e-024
gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation... 86 5e-024
gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum m... 86 5e-024
gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum b... 91 6e-024
gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1... 85 7e-024
gb|CW489486.1|CW489486 fsbb001f274h04f0 Sorghum methylation... 85 7e-024
gb|BG049497.1|BG049497 OV1_20_G04.g1_A002 Ovary 1 (OV1) Sor... 85 7e-024
gb|BG049053.1|BG049053 OV1_22_F09.g1_A002 Ovary 1 (OV1) Sor... 85 7e-024
gb|CN132942.1|CN132942 OX1_9_D11.b1_A002 Oxidatively-stress... 74 9e-024
gb|BE918012.1|BE918012 OV1_8_G11.g1_A002 Ovary 1 (OV1) Sorg... 74 9e-024
gb|CD223183.1|CD223183 CCC1_26_G01.g1_A007 Callus culture/c... 74 1e-023
gb|CW039394.1|CW039394 104_272_10505475_115_30390 Sorghum m... 84 1e-023
gb|CW159279.1|CW159279 104_565_11149276_116_36410_010 Sorgh... 84 1e-023
gb|AW678309.1|AW678309 WS1_14_G01.g1_A002 Water-stressed 1 ... 84 1e-023
gb|AF402938.1|AF402938 Sorghum arundinaceum chitinase-B gen... 76 3e-023
gb|CN151360.1|CN151360 WOUND1_75_B02.b1_A002 Wounded leaves... 81 8e-023
gb|CW357974.1|CW357974 fsbb001f024n22k0 Sorghum methylation... 81 8e-023
gb|CW150339.1|CW150339 104_549_11142974_116_36302_051 Sorgh... 81 8e-023
gb|CD423411.1|CD423411 SA1_23_C09.b1_A002 Salicylic acid-tr... 81 8e-023
gb|CW318996.1|CW318996 104_811_11474252_116_35881_074 Sorgh... 81 8e-023
gb|BE359997.1|BE359997 DG1_60_H07.g2_A002 Dark Grown 1 (DG1... 81 8e-023
gb|AW924229.1|AW924229 WS1_51_H04.b1_A002 Water-stressed 1 ... 81 8e-023
gb|BE363379.1|BE363379 WS1_62_C05.g1_A002 Water-stressed 1 ... 74 1e-022
gb|BE362915.2|BE362915 DG1_90_E12.g1_A002 Dark Grown 1 (DG1... 84 1e-022
gb|AF402939.1|AF402939 Sorghum halepense chitinase-B gene, ... 74 2e-022
gb|CD225586.1|CD225586 CCC1_40_H10.b1_A007 Callus culture/c... 76 3e-022
gb|AY048375.1| Sorghum bicolor chitinase-B gene, partial cds 72 4e-022
gb|CW324492.1|CW324492 104_819_11477191_148_35910_030 Sorgh... 81 7e-022
gb|CW363965.1|CW363965 fsbb001f035m22f0 Sorghum methylation... 81 7e-022
gb|CD227568.1|CD227568 CCC1_52_A02.b1_A007 Callus culture/c... 81 7e-022
gb|CD464022.1|CD464022 ETH1_48_G10.b1_A002 Ethylene-treated... 76 9e-022
gb|CD229267.1|CD229267 CCC1_14_D09.b1_A007 Callus culture/c... 76 9e-022
gb|AW922735.1|AW922735 DG1_45_B06.g1_A002 Dark Grown 1 (DG1... 76 9e-022
gb|CD224145.1|CD224145 CCC1_32_A09.b1_A007 Callus culture/c... 76 9e-022
gb|CD227859.1|CD227859 CCC1_56_F04.b1_A007 Callus culture/c... 76 9e-022
gb|CD229477.1|CD229477 CCC1_16_C07.b1_A007 Callus culture/c... 76 9e-022
gb|CD228687.1|CD228687 CCC1_9_D03.b1_A007 Callus culture/ce... 76 9e-022
gb|CD226496.1|CD226496 CCC1_46_E08.b1_A007 Callus culture/c... 76 9e-022
gb|CD223269.1|CD223269 CCC1_27_E04.b1_A007 Callus culture/c... 76 9e-022
gb|CD220455.1|CD220455 CCC1_67_F06.b1_A007 Callus culture/c... 76 9e-022
gb|CD228140.1|CD228140 CCC1_6_E03.b1_A007 Callus culture/ce... 76 9e-022
gb|AW746695.1|AW746695 WS1_54_E02.g1_A002 Water-stressed 1 ... 76 9e-022
gb|BG556500.1|BG556500 EM1_37_H12.g1_A002 Embryo 1 (EM1) So... 76 9e-022
gb|CW098317.1|CW098317 104_464_11002941_148_34366_083 Sorgh... 76 9e-022
gb|BE598196.1|BE598196 PI1_66_H02.b1_A002 Pathogen induced ... 100 1e-021
gb|CW206618.1|CW206618 104_635_11187687_148_36965_058 Sorgh... 105 1e-021
gb|CD221392.1|CD221392 CCC1_54_C04.b1_A007 Callus culture/c... 74 3e-021
gb|CD220272.1|CD220272 CCC1_66_G11.b1_A007 Callus culture/c... 74 4e-021
gb|BE918591.1|BE918591 OV1_8_G11.b1_A002 Ovary 1 (OV1) Sorg... 74 5e-021
gb|CN133023.1|CN133023 OX1_9_D11.g1_A002 Oxidatively-stress... 74 7e-021
gb|BG101749.1|BG101749 EM1_5_G10.b1_A002 Embryo 1 (EM1) Sor... 76 7e-021
gb|CW365833.1|CW365833 fsbb001f038i18k0 Sorghum methylation... 74 8e-021
gb|CL160722.1|CL160722 104_351_10805186_116_31825_242 Sorgh... 74 8e-021
gb|AW746018.1|AW746018 WS1_38_H11.g1_A002 Water-stressed 1 ... 74 8e-021
gb|CD224094.1|CD224094 CCC1_32_C12.b1_A007 Callus culture/c... 74 8e-021
gb|CD226332.1|CD226332 CCC1_45_F08.b1_A007 Callus culture/c... 74 8e-021
gb|CD226807.1|CD226807 CCC1_48_C11.b1_A007 Callus culture/c... 74 8e-021
gb|CD223155.1|CD223155 CCC1_26_G01.b1_A007 Callus culture/c... 74 8e-021
gb|CD228493.1|CD228493 CCC1_8_E11.b1_A007 Callus culture/ce... 74 8e-021
gb|CD432114.1|CD432114 ETH1_26_H07.b1_A002 Ethylene-treated... 74 8e-021
>gb|CD429983.1|CD429983 ETH1_16_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_16_A10_A002 5', mRNA sequence
Length = 693
Score = 342 bits (742), Expect = 4e-093
Identities = 132/147 (89%), Positives = 137/147 (93%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYYGR 727
FPGFGTTGD+QTRRRELAAFFGQTSHETTGGW TAP G FAWGYCRVKEQ TDPPYYGR
Sbjct: 252 FPGFGTTGDDQTRRRELAAFFGQTSHETTGGWPTAPGGQFAWGYCRVKEQNPTDPPYYGR 431
Query: 726 GPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTG 547
GPIQLTH+YNYR AGQALNLNLVG+PDLV+ DPVVAFKTAIWFWMTPQSPKPSCHAVMTG
Sbjct: 432 GPIQLTHEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHAVMTG 611
Query: 546 DWRPSATDRAAGRLPGYGLTTNIINGG 466
W PSA DRAAGRLPGYG+TTNIINGG
Sbjct: 612 SWTPSADDRAAGRLPGYGVTTNIINGG 692
Score = 305 bits (660), Expect = 7e-082
Identities = 129/147 (87%), Positives = 132/147 (89%)
Frame = +2 / -3
Query: 467 PPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSLATR 646
PPLMM VV PYPGSLPAARS AEG+Q PV+TAWH+G GDCGVIQNQMAVLKATTGSL TR
Sbjct: 691 PPLMMLVVTPYPGSLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQMAVLKATTGSLDTR 512
Query: 647 SGSPTRFRFSACPASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPPVV 826
SG PTRFRFSACPA L*LY *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPPVV
Sbjct: 511 SGLPTRFRFSACPACL*LYS*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPPVV 332
Query: 827 SWDVWPKKAASSRLRVCSSPVVPKPGN 907
SWDV PKKAASSRLRV SSPVVPKPGN
Sbjct: 331 SWDVCPKKAASSRLRVWSSPVVPKPGN 251
Score = 207 bits (447), Expect = 2e-052
Identities = 94/145 (64%), Positives = 100/145 (68%)
Frame = +1 / -2
Query: 472 VDDVRGQAVSGEPPRXXXXXXXXXXXXXXXXXRGLGRLRRHPEPDGRLEGYHGVSXXXXX 651
VDDV G A+ GEPPR R L RLRRHPEPDGRLEG+HGV+
Sbjct: 686 VDDVGGHAIPGEPPRGAVVGGGRPAAGHDGVARRLRRLRRHPEPDGRLEGHHGVARHQVR 507
Query: 652 XXXXXXXXXLPGEPVVVLMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIRSSRPSTGGFV 831
LP PVVVLMS*LYGSSSIVGWVR LFLHPAVSPGK S RSS PSTG FV
Sbjct: 506 VAHQVQVQRLPSLPVVVLMS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTRSSWPSTGSFV 327
Query: 832 GRLAEEGGELPPARLLVAGGAEAGE 906
GRL+EEGGELPP+ L+VAGGAEAGE
Sbjct: 326 GRLSEEGGELPPSGLVVAGGAEAGE 252
Score = 122 bits (260), Expect(2) = 6e-035
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = -2 / +2
Query: 838 DVPRNHRWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 674
DVPRN+RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 320 DVPRNYRWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 484
Score = 47.3 bits (97), Expect(2) = 6e-035
Identities = 22/50 (44%), Positives = 24/50 (48%)
Frame = -2 / +2
Query: 619 LQDGHXXXXXXXXXXXXVPRRDDXXXXXXXXXXXRGEAPRIRPDHEHHQR 470
LQDGH VPRR D RGEAPR+ DH+HHQR
Sbjct: 539 LQDGHLVLDDAAVAEAVVPRRHDRQLDALRRRPRRGEAPRVWRDHQHHQR 688
>gb|CW266083.1|CW266083 104_735_11232237_148_35267_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232237, DNA
sequence
Length = 662
Score = 205 bits (442), Expect(4) = 2e-090
Identities = 79/98 (80%), Positives = 89/98 (90%)
Frame = -3 / +2
Query: 720 IQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDW 541
+++ +YNYR AGQALNLNLVG+PDLV+ DPVVAFKTAIWFWMTPQSPKPSCHAVMTG W
Sbjct: 221 LRVRSEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFWMTPQSPKPSCHAVMTGSW 400
Query: 540 RPSATDRAAGRLPGYGLTTNIINGGLECGEDRSTDGAK 427
PSA DRAAGRLPGYG+TTNIINGG+ECG+ +STD AK
Sbjct: 401 TPSADDRAAGRLPGYGVTTNIINGGMECGKGQSTDAAK 514
Score = 177 bits (381), Expect(3) = 1e-073
Identities = 75/93 (80%), Positives = 80/93 (86%)
Frame = +2 / -3
Query: 425 ALAPSVERSSPHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQ 604
+LA SV+ PHS PPLMM VV PYPGSLPAARS AEG+Q PV+TAWH+G GDCGVIQNQ
Sbjct: 516 SLAASVDWPLPHSIPPLMMLVVTPYPGSLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQ 337
Query: 605 MAVLKATTGSLATRSGSPTRFRFSACPASL*LY 703
MAVLKATTGSL TRSG PTRFRFSACPA L*LY
Sbjct: 336 MAVLKATTGSLDTRSGLPTRFRFSACPACL*LY 238
Score = 94.1 bits (199), Expect(4) = 2e-090
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = -2 / +1
Query: 820 RWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS 707
RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS
Sbjct: 4 RWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS 117
Score = 89.5 bits (189), Expect(4) = 3e-046
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = -3 / +2
Query: 819 GGWATAPDGPFAWGYCRVKEQKQTDPPYYGRGPIQLT 709
GGW TAP G FAWGYCRVKEQ TDPPYYGRGPIQLT
Sbjct: 5 GGWPTAPGGQFAWGYCRVKEQNPTDPPYYGRGPIQLT 115
Score = 85.4 bits (180), Expect(3) = 1e-073
Identities = 37/45 (82%), Positives = 37/45 (82%)
Frame = +2 / -3
Query: 686 ASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPP 820
A L L *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPP
Sbjct: 138 ADLILAY*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPP 4
Score = 79.9 bits (168), Expect(3) = 7e-039
Identities = 37/78 (47%), Positives = 40/78 (51%)
Frame = +1 / -2
Query: 472 VDDVRGQAVSGEPPRXXXXXXXXXXXXXXXXXRGLGRLRRHPEPDGRLEGYHGVSXXXXX 651
VDDV G A+ GEPPR R L RLRRHPEPDGRLEG+HGV+
Sbjct: 469 VDDVGGHAIPGEPPRGAVVGGGRPAAGHDGVARRLRRLRRHPEPDGRLEGHHGVARHQVR 290
Query: 652 XXXXXXXXXLPGEPVVVL 705
LP PVVVL
Sbjct: 289 VAHQVQVQRLPSLPVVVL 236
Score = 78.0 bits (164), Expect(2) = 2e-021
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -1 / +3
Query: 818 VDGRLLRMDRLPGDTAG*RNRNRRTHPTMDEDPYS*L 708
VDG+LLR+D LPGDTAG*RNR RTHPTMDEDPYS*L
Sbjct: 6 VDGQLLRVDSLPGDTAG*RNRTPRTHPTMDEDPYS*L 116
Score = 73.9 bits (155), Expect(3) = 7e-039
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1 / -2
Query: 703 LMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIRSSRPST 819
L+S*LYGSSSIVGWVR LFLHPAVSPGK S RSS PST
Sbjct: 121 LLS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTRSSWPST 5
Score = 69.8 bits (146), Expect(4) = 2e-090
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = -3 / +2
Query: 426 AAKDRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
AAKDRVGYYKRY ML V YGDN+AC QKPYGG*
Sbjct: 506 AAKDRVGYYKRYSDMLRVRYGDNIACKDQKPYGG* 610
Score = 68.9 bits (144), Expect(4) = 3e-046
Identities = 31/64 (48%), Positives = 35/64 (54%)
Frame = -2 / +1
Query: 619 LQDGHXXXXXXXXXXXXVPRRDDXXXXXXXXXXXRGEAPRIRPDHEHHQRWSRVRRGPLH 440
LQDGH VPRR D RGEAPR+ DH+HHQR VR+GP+H
Sbjct: 322 LQDGHLVLDDAAVAEAVVPRRHDRQLDALRRRPRRGEAPRVWRDHQHHQRRDGVRQGPVH 501
Query: 439 RRRQ 428
RRRQ
Sbjct: 502 RRRQ 513
Score = 67.0 bits (140), Expect(4) = 3e-046
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = -2 / +1
Query: 424 RQGPGRLLQEVLRYARSGVRGQHGMREPEALRRMMTL 314
RQGPGRLLQEVLRYA S +RGQH ++ PEALRR+ T+
Sbjct: 508 RQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTTI 618
Score = 54.7 bits (113), Expect(3) = 1e-073
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = +2 / -3
Query: 326 PP*GFWLPHAMLSPYPTPSIPQYLL**PTRSLAA 427
PP*GFW AMLSP T SI +YLL**PTRSLAA
Sbjct: 606 PP*GFWSLQAMLSP*RTRSISEYLL**PTRSLAA 505
Score = 48.3 bits (99), Expect(2) = 2e-021
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = -1 / +3
Query: 413 GSATTRGTAVCSEWGTGTTWHAGARSLTE 327
GSATTRGT +CSE TGTT A RSLTE
Sbjct: 519 GSATTRGTPICSECATGTTSPARTRSLTE 605
Score = 46.9 bits (96), Expect(3) = 7e-039
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +3 / -1
Query: 318 VIILRKASGSRMPCCPRTPLRAYRSTSC 401
V+ LRKASG CCPR+ L AYRSTSC
Sbjct: 614 VVSLRKASGPCRRCCPRSALGAYRSTSC 531
Score = 23.5 bits (45), Expect(4) = 2e-090
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3 / +2
Query: 306 IYGCCNASLHVCL 268
IYGCC VCL
Sbjct: 620 IYGCCKPFTCVCL 658
Score = 21.7 bits (41), Expect(4) = 3e-046
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1 / +2
Query: 281 FTCVCLS 261
FTCVCLS
Sbjct: 641 FTCVCLS 661
>gb|BE358858.1|BE358858 DG1_32_F07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 655
Score = 259 bits (561), Expect(4) = 4e-086
Identities = 100/116 (86%), Positives = 107/116 (92%)
Frame = -3 / +3
Query: 774 CRVKEQKQTDPPYYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
CRVKEQ TDPPYYGRGPIQLTH+YNYR AGQALNLNLVG+PDLV+ DPVVAFKTAIWFW
Sbjct: 3 CRVKEQNPTDPPYYGRGPIQLTHEYNYRQAGQALNLNLVGNPDLVSSDPVVAFKTAIWFW 182
Query: 594 MTPQSPKPSCHAVMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGEDRSTDGAK 427
MTPQSPKPSCHAVMTG W PSA DRAAGRLPGYG+TTNIINGG+ECG+ +STD AK
Sbjct: 183 MTPQSPKPSCHAVMTGSWTPSADDRAAGRLPGYGVTTNIINGGMECGKGQSTDAAK 350
Score = 225 bits (486), Expect(2) = 4e-068
Identities = 97/117 (82%), Positives = 102/117 (87%)
Frame = +2 / -1
Query: 425 ALAPSVERSSPHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQ 604
+LA SV+ PHS PPLMM VV PYPGSLPAARS AEG+Q PV+TAWH+G GDCGVIQNQ
Sbjct: 352 SLAASVDWPLPHSIPPLMMLVVTPYPGSLPAARSSAEGVQLPVMTAWHDGFGDCGVIQNQ 173
Query: 605 MAVLKATTGSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP**GGSVCFCSFTRQ 775
MAVLKATTGSL TRSG PTRFRFSACPA L*LY *VSCMGPRP**GGSV FCSFTRQ
Sbjct: 172 MAVLKATTGSLDTRSGLPTRFRFSACPACL*LYS*VSCMGPRP**GGSVGFCSFTRQ 2
Score = 126 bits (269), Expect(3) = 3e-038
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +1 / -3
Query: 472 VDDVRGQAVSGEPPRXXXXXXXXXXXXXXXXXRGLGRLRRHPEPDGRLEGYHGVSXXXXX 651
VDDV G A+ GEPPR R L RLRRHPEPDGRLEG+HGV+
Sbjct: 305 VDDVGGHAIPGEPPRGAVVGGGRPAAGHDGVARRLRRLRRHPEPDGRLEGHHGVARHQVR 126
Query: 652 XXXXXXXXXLPGEPVVVLMS*LYGSSSIVGWVRLFLFLHPA 774
LP PVVVLMS*LYGSSSIVGWVR LFLHPA
Sbjct: 125 VAHQVQVQRLPSLPVVVLMS*LYGSSSIVGWVRGVLFLHPA 3
Score = 69.8 bits (146), Expect(4) = 4e-086
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = -3 / +3
Query: 426 AAKDRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
AAKDRVGYYKRY ML V YGDN+AC QKPYGG*
Sbjct: 342 AAKDRVGYYKRYSDMLRVRYGDNIACKDQKPYGG* 446
Score = 69.8 bits (146), Expect(4) = 8e-042
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = -2 / +2
Query: 775 LPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 674
LPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 2 LPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 103
Score = 68.9 bits (144), Expect(4) = 8e-042
Identities = 31/64 (48%), Positives = 35/64 (54%)
Frame = -2 / +2
Query: 619 LQDGHXXXXXXXXXXXXVPRRDDXXXXXXXXXXXRGEAPRIRPDHEHHQRWSRVRRGPLH 440
LQDGH VPRR D RGEAPR+ DH+HHQR VR+GP+H
Sbjct: 158 LQDGHLVLDDAAVAEAVVPRRHDRQLDALRRRPRRGEAPRVWRDHQHHQRRDGVRQGPVH 337
Query: 439 RRRQ 428
RRRQ
Sbjct: 338 RRRQ 349
Score = 67.0 bits (140), Expect(4) = 8e-042
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = -2 / +2
Query: 424 RQGPGRLLQEVLRYARSGVRGQHGMREPEALRRMMTL 314
RQGPGRLLQEVLRYA S +RGQH ++ PEALRR+ T+
Sbjct: 344 RQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTTI 454
Score = 54.7 bits (113), Expect(2) = 4e-068
Identities = 26/34 (76%), Positives = 27/34 (79%)
Frame = +2 / -1
Query: 326 PP*GFWLPHAMLSPYPTPSIPQYLL**PTRSLAA 427
PP*GFW AMLSP T SI +YLL**PTRSLAA
Sbjct: 442 PP*GFWSLQAMLSP*RTRSISEYLL**PTRSLAA 341
Score = 40.5 bits (82), Expect(3) = 3e-038
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1 / -3
Query: 358 VVPVPHSEHTAVPLVVADP 414
VVPV HSEH VPLVVADP
Sbjct: 410 VVPVAHSEHIGVPLVVADP 354
Score = 31.8 bits (63), Expect(3) = 3e-038
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3 / -3
Query: 231 FAASLIYSLGREANTREGLHCSNHRSATSVIILRKASGSRMP 356
FA+ + L REANTRE L + RS ++ + L +G +P
Sbjct: 527 FASLIFIFLAREANTRERLAATIDRSLSASVRLLVLAGDVVP 402
Score = 24.9 bits (48), Expect(4) = 4e-086
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 281 FTCVCLST*RINQASSEPT 225
FTCVCLS+* +S+ T
Sbjct: 477 FTCVCLSS*ENKDQASKRT 533
Score = 23.5 bits (45), Expect(4) = 4e-086
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3 / +3
Query: 306 IYGCCNASLHVCL 268
IYGCC VCL
Sbjct: 456 IYGCCKPFTCVCL 494
Score = 22.6 bits (43), Expect(4) = 8e-042
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3 / +2
Query: 285 SLHVCLPLYLKNKSS*QRTY 226
+ HVCLPL L+ S +TY
Sbjct: 473 AFHVCLPL*LRK*RSS*QTY 532
>gb|CW206617.1|CW206617 104_635_11187687_116_36961_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11187687, DNA
sequence
Length = 639
Score = 190 bits (410), Expect(3) = 3e-079
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 453 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 274
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VMTG W PS D AAGRLPGYG+ TNIINGGLECG+
Sbjct: 273 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGK 166
Score = 132 bits (282), Expect(3) = 4e-047
Identities = 60/94 (63%), Positives = 66/94 (70%)
Frame = +2 / +2
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 170 PHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 349
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 736
ATRSG ACPA+ *L L* MGPRP*
Sbjct: 350 DATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 451
Score = 84.9 bits (179), Expect(3) = 3e-079
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = -3 / -1
Query: 873 TRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 733
T++RELAAF QTSHETTGGWATAPDG +AWGYC +EQ P Y
Sbjct: 636 TQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAASGPDY 496
Score = 61.1 bits (127), Expect(3) = 3e-079
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3 / -1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YGDN+ C +QKP+ *
Sbjct: 144 DRIGFYKRYCDLLGVSYGDNLDCANQKPFNS* 49
Score = 60.6 bits (126), Expect(3) = 4e-047
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +2 / +2
Query: 758 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRV 874
CS +Q PQA PSGAVAHPPVVS +VW + AASSR V
Sbjct: 521 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAASSRFWV 637
Score = 35.9 bits (72), Expect(3) = 4e-047
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2 / +2
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSP TPS Q L* P RS L+ + S P
Sbjct: 62 GFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRP 184
>gb|BE598085.1|BE598085 PI1_65_E11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 632
Score = 190 bits (410), Expect(3) = 3e-076
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -3 / +2
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 173 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 352
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VMTG W PS D AAGRLPGYG+ TNIINGGLECG+
Sbjct: 353 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGK 460
Score = 132 bits (282), Expect(3) = 8e-046
Identities = 60/94 (63%), Positives = 66/94 (70%)
Frame = +2 / -3
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 456 PHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 277
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 736
ATRSG ACPA+ *L L* MGPRP*
Sbjct: 276 DATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 175
Score = 74.8 bits (157), Expect(3) = 3e-076
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -3 / +2
Query: 855 AAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 733
AAF QTSHETTGGWATAPDG +AWGYC +EQ P Y
Sbjct: 8 AAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAASGPDY 130
Score = 61.1 bits (127), Expect(3) = 3e-076
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3 / +2
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YGDN+ C +QKP+ *
Sbjct: 482 DRIGFYKRYCDLLGVSYGDNLDCANQKPFNS* 577
Score = 56.1 bits (116), Expect(3) = 8e-046
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +2 / -3
Query: 758 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAAS 859
CS +Q PQA PSGAVAHPPVVS +VW + AAS
Sbjct: 105 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAAS 4
Score = 35.9 bits (72), Expect(3) = 8e-046
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2 / -3
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSP TPS Q L* P RS L+ + S P
Sbjct: 564 GFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRP 442
>gb|CW388025.1|CW388025 fsbb001f072j20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 740
Score = 143 bits (306), Expect(4) = 2e-075
Identities = 52/70 (74%), Positives = 59/70 (84%)
Frame = -3 / -1
Query: 663 LVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATDRAAGRLPGYGLTT 484
++ DPDLVA D V+F+TA+WFWMTPQ PKPSCHAV+TG W PS D AAGRLPGYG+ T
Sbjct: 371 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQWAPSPADTAAGRLPGYGVVT 192
Query: 483 NIINGGLECG 454
NIINGGLECG
Sbjct: 191 NIINGGLECG 162
Score = 116 bits (248), Expect(4) = 3e-044
Identities = 47/67 (70%), Positives = 50/67 (74%)
Frame = +2 / +1
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPGSLPAA S +G PV TAWH+GLG CGVIQNQ AV T S
Sbjct: 163 PHSRPPLMMLVTTPYPGSLPAAVSAGDGAHCPVTTAWHDGLGGCGVIQNQTAVSNETVAS 342
Query: 635 LATRSGS 655
+ATRSGS
Sbjct: 343 VATRSGS 363
Score = 100 bits (212), Expect(4) = 2e-075
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3 / -1
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQ 757
FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC +E+
Sbjct: 671 FPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYKEEK 522
Score = 67.0 bits (140), Expect(4) = 3e-044
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +2 / +1
Query: 773 QYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
Q PQA GPSGA AHPPVVS DV + AA+SR PVVPKPGN
Sbjct: 538 Q*PQA*GPSGADAHPPVVSCDVCARNAATSRFWASGLPVVPKPGN 672
Score = 57.0 bits (118), Expect(4) = 2e-075
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = -3 / -1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YG+N+ C +Q+P+ *
Sbjct: 137 DRIGFYKRYCDLLGVSYGNNVDCANQRPFNS* 42
Score = 41.8 bits (85), Expect(4) = 2e-075
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQAL 673
YYGRGPIQ+++ YNY AG+A+
Sbjct: 449 YYGRGPIQISYNYNYGPAGEAI 384
Score = 28.6 bits (56), Expect(4) = 3e-044
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2 / +1
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
G WL + L P TPS Q L* P RS L+ S P
Sbjct: 55 GLWLAQSTLLP*LTPSKSQ*RL*KPIRSATRLSAPWPHSRP 177
Score = 24.4 bits (47), Expect(4) = 3e-044
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +3
Query: 679 LPGEPVVVLMS*LYGSSSIV 738
LPG PVVV++ L G +++V
Sbjct: 390 LPGGPVVVVVGDLDGPAAVV 449
>gb|CW307372.1|CW307372 104_795_11468105_148_35736_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 603
Score = 185 bits (398), Expect(3) = 4e-075
Identities = 69/100 (69%), Positives = 80/100 (80%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA D V+F+TA+WFWMTPQSPKPSCH
Sbjct: 211 YYGRGPIQISYNYNYGPAGQAIGAGILANPDLVAADATVSFETAVWFWMTPQSPKPSCHD 390
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGEDRST 439
VMTG W PSA D AAGRLPGYG+ TNIINGGLECG T
Sbjct: 391 VMTGQWTPSAADIAAGRLPGYGVVTNIINGGLECGHGADT 510
Score = 128 bits (275), Expect(3) = 2e-040
Identities = 60/102 (58%), Positives = 66/102 (64%)
Frame = +2 / -2
Query: 431 APSVERSSPHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMA 610
A V PHSRPPLMM V PYPG+LPAA S A+G+ PV+T+WH+GLGDCGVIQN A
Sbjct: 518 ATRVSAPWPHSRPPLMMLVTTPYPGNLPAAMSAADGVHCPVMTSWHDGLGDCGVIQNHTA 339
Query: 611 VLKATTGSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 736
V T S ATRSG A PA *L L* MGPRP*
Sbjct: 338 VSNETVASAATRSGLARMPAPMAWPAGP*L*L*EIWMGPRP* 213
Score = 81.7 bits (172), Expect(3) = 4e-075
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -3 / +1
Query: 891 TTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 733
T ++RELAAF QTSHETTGGWATAPDG +AWGYC +E+ P Y
Sbjct: 10 TGASPDVQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEKDGASGPDY 168
Score = 55.6 bits (115), Expect(3) = 4e-075
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKP 334
DR+G+YKRYC +LGV YGDN+ C Q P
Sbjct: 520 DRIGFYKRYCDLLGVSYGDNLDCAHQMP 603
Score = 51.9 bits (107), Expect(3) = 2e-040
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = +2 / -2
Query: 761 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSR 865
S +Q PQA PSGAVAHPPVVS DV + AASSR
Sbjct: 140 SSLKQ*PQA*APSGAVAHPPVVSCDVCARNAASSR 36
Score = 24.9 bits (48), Expect(3) = 2e-040
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3 / -3
Query: 336 ASGSRMPCCPRTPLRAYRSTSC 401
ASG R P C + +A RS++C
Sbjct: 601 ASGGRSPSCRHS*PQASRSSAC 536
>gb|BE597800.1|BE597800 PI1_65_E11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 600
Score = 190 bits (410), Expect(3) = 2e-068
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 135 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 314
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VMTG W PS D AAGRLPGYG+ TNIINGGLECG+
Sbjct: 315 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGK 422
Score = 132 bits (282), Expect(3) = 4e-040
Identities = 60/94 (63%), Positives = 66/94 (70%)
Frame = +2 / -3
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 418 PHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 239
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 736
ATRSG ACPA+ *L L* MGPRP*
Sbjct: 238 DATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 137
Score = 61.1 bits (127), Expect(3) = 2e-068
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YGDN+ C +QKP+ *
Sbjct: 444 DRIGFYKRYCDLLGVSYGDNLDCANQKPFNS* 539
Score = 48.7 bits (100), Expect(3) = 2e-068
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -3 / +3
Query: 822 TGGWATAPDGPFAWGYCRVKEQKQTDPPYY 733
TGGWATAPDG +A GYC +EQ P Y
Sbjct: 3 TGGWATAPDGAYAGGYCFKEEQGAASGPXY 92
Score = 36.8 bits (74), Expect(3) = 4e-040
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +2 / -3
Query: 758 CSFTRQYPQANGPSGAVAHPPV 823
CS +Q P A PSGAVAHPPV
Sbjct: 67 CSSLKQ*PPA*APSGAVAHPPV 2
Score = 35.9 bits (72), Expect(3) = 4e-040
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2 / -3
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSP TPS Q L* P RS L+ + S P
Sbjct: 526 GFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRP 404
>gb|CN129927.1|CN129927 RHOH1_38_F07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 3', mRNA sequence
Length = 809
Score = 164 bits (353), Expect(3) = 7e-065
Identities = 63/96 (65%), Positives = 78/96 (81%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 307 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 486
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VM G +RP+ D AA R G+GLTTNIINGG+ECG+
Sbjct: 487 VMVGRYRPTDADVAANRTAGFGLTTNIINGGIECGK 594
Score = 117 bits (251), Expect(2) = 2e-038
Identities = 54/93 (58%), Positives = 62/93 (66%)
Frame = +2 / -1
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHS PPL+M VV P P L AA S + G P +T+WH+GLGD GVIQN AVL AT+GS
Sbjct: 590 PHSMPPLIMLVVSPNPAVLFAATSASVGRYRPTMTSWHDGLGDLGVIQNHSAVLNATSGS 411
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 733
AT SG P+ + SACPA *L S MGPRP
Sbjct: 410 PATTSGLPSPSKPSACPAGP*LKFHDSWMGPRP 312
Score = 92.3 bits (195), Expect(3) = 7e-065
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +1
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP FG GD TR+RE+AAF Q SHETTGGWATAPDGP+AWG C +E
Sbjct: 94 FPAFGGDGDAATRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEE 240
Score = 62.9 bits (131), Expect(2) = 2e-038
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2 / -1
Query: 761 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPG 904
S +Q P A GPSGAVAHPPVVS ++ + AA+SR RV +SP P G
Sbjct: 239 SSLKQSPHA*GPSGAVAHPPVVSCEICARNAATSRFRVAASPSPPNAG 96
Score = 31.3 bits (62), Expect(3) = 7e-065
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 435 GAKAAKDRVGYYKRYCGMLG 376
G DR+G+++RYC +LG
Sbjct: 598 GVPQVDDRIGFFRRYCELLG 657
>gb|CW488277.1|CW488277 fsbb001f254j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f254j12, DNA
sequence
Length = 507
Score = 162 bits (349), Expect(2) = 2e-064
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = -3 / -3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 271 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 92
Query: 558 VMTGDWRPSATDRAAGRLPGYGLT 487
VMTG W PS D AAGRLPGYG++
Sbjct: 91 VMTGQWTPSGADTAAGRLPGYGVS 20
Score = 106 bits (227), Expect(2) = 1e-040
Identities = 50/81 (61%), Positives = 56/81 (69%)
Frame = +2 / +3
Query: 494 PYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRF 673
PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS ATRSG
Sbjct: 27 PYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGSDATRSGLARMPAP 206
Query: 674 SACPASL*LYL*VSCMGPRP* 736
ACPA+ *L L* MGPRP*
Sbjct: 207 MACPAAP*L*L*EIWMGPRP* 269
Score = 105 bits (224), Expect(2) = 2e-064
Identities = 40/58 (68%), Positives = 44/58 (75%)
Frame = -3 / -3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYY 733
FPGFGTTG T++RELAAF QTSHETTGGWATAPDG +AWGYC +EQ P Y
Sbjct: 487 FPGFGTTGGADTQKRELAAFLAQTSHETTGGWATAPDGAYAWGYCFKEEQGAASGPDY 314
Score = 81.3 bits (171), Expect(2) = 1e-040
Identities = 34/50 (68%), Positives = 38/50 (76%)
Frame = +2 / +3
Query: 758 CSFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
CS +Q PQA PSGAVAHPPVVS +VW + AASSR V + PVVPKPGN
Sbjct: 339 CSSLKQ*PQA*APSGAVAHPPVVSCEVWARNAASSRFWVSAPPVVPKPGN 488
>gb|BZ338038.1|BZ338038 ia92e12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia92e12 5', DNA sequence
Length = 608
Score = 143 bits (306), Expect(5) = 1e-059
Identities = 52/70 (74%), Positives = 59/70 (84%)
Frame = -3 / -1
Query: 663 LVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATDRAAGRLPGYGLTT 484
++ DPDLVA D V+F+TA+WFWMTPQ PKPSCHAV+TG W PS D AAGRLPGYG+ T
Sbjct: 362 ILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQWAPSPADTAAGRLPGYGVVT 183
Query: 483 NIINGGLECG 454
NIINGGLECG
Sbjct: 182 NIINGGLECG 153
Score = 116 bits (248), Expect(4) = 1e-031
Identities = 47/67 (70%), Positives = 50/67 (74%)
Frame = +2 / +1
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPGSLPAA S +G PV TAWH+GLG CGVIQNQ AV T S
Sbjct: 154 PHSRPPLMMLVTTPYPGSLPAAVSAGDGAHCPVTTAWHDGLGGCGVIQNQTAVSNETVAS 333
Query: 635 LATRSGS 655
+ATRSGS
Sbjct: 334 VATRSGS 354
Score = 57.0 bits (118), Expect(5) = 1e-059
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = -3 / -1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YG+N+ C +Q+P+ *
Sbjct: 128 DRIGFYKRYCDLLGVSYGNNVDCANQRPFNS* 33
Score = 41.8 bits (85), Expect(5) = 1e-059
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQAL 673
YYGRGPIQ+++ YNY AG+A+
Sbjct: 440 YYGRGPIQISYNYNYGPAGEAI 375
Score = 40.5 bits (82), Expect(5) = 1e-059
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3 / -1
Query: 816 GWATAPDGPFAWGYCRVKEQ 757
G A+APDGP+AWGYC +E+
Sbjct: 572 GGASAPDGPYAWGYCYKEEK 513
Score = 28.6 bits (56), Expect(4) = 1e-031
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2 / +1
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
G WL + L P TPS Q L* P RS L+ S P
Sbjct: 46 GLWLAQSTLLP*LTPSKSQ*RL*KPIRSATRLSAPWPHSRP 168
Score = 24.4 bits (47), Expect(4) = 1e-031
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1 / +3
Query: 679 LPGEPVVVLMS*LYGSSSIV 738
LPG PVVV++ L G +++V
Sbjct: 381 LPGGPVVVVVGDLDGPAAVV 440
Score = 24.4 bits (47), Expect(5) = 1e-059
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3 / -2
Query: 849 FFGQTSHETTGG 814
F QTS ETTGG
Sbjct: 607 FLAQTSRETTGG 572
Score = 24.0 bits (46), Expect(4) = 1e-031
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2 / +1
Query: 773 QYPQANGPSGAVAHP 817
Q PQA GPSGA A P
Sbjct: 529 Q*PQA*GPSGADAPP 573
>gb|BE367523.1|BE367523 PI1_8_E06.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 520
Score = 190 bits (410), Expect(2) = 1e-059
Identities = 69/96 (71%), Positives = 81/96 (84%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
YYGRGPIQ+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHA
Sbjct: 18 YYGRGPIQISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHA 197
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VMTG W PS D AAGRLPGYG+ TNIINGGLECG+
Sbjct: 198 VMTGQWTPSGADTAAGRLPGYGVVTNIINGGLECGK 305
Score = 132 bits (282), Expect(2) = 2e-034
Identities = 60/94 (63%), Positives = 66/94 (70%)
Frame = +2 / -1
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 301 PHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 122
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP* 736
ATRSG ACPA+ *L L* MGPRP*
Sbjct: 121 DATRSGLARMPAPMACPAAP*L*L*EIWMGPRP* 20
Score = 61.1 bits (127), Expect(2) = 1e-059
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YGDN+ C +QKP+ *
Sbjct: 327 DRIGFYKRYCDLLGVSYGDNLDCANQKPFNS* 422
Score = 35.9 bits (72), Expect(2) = 2e-034
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2 / -1
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSP TPS Q L* P RS L+ + S P
Sbjct: 409 GFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRP 287
>gb|BE358815.1|BE358815 DG1_32_F07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 217 bits (469), Expect = 2e-055
Identities = 84/95 (88%), Positives = 88/95 (92%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQKQTDPPYYGR 727
FPGFGTTGD+QTRRRELAAFFGQTSHETTGGW TAP G FAWGYCRVKEQ TDPPYYGR
Sbjct: 237 FPGFGTTGDDQTRRRELAAFFGQTSHETTGGWPTAPGGQFAWGYCRVKEQNPTDPPYYGR 416
Query: 726 GPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVV 622
GPIQLTH+YNYR AGQALNLNLVG+PDLV+ DPVV
Sbjct: 417 GPIQLTHEYNYRQAGQALNLNLVGNPDLVSSDPVV 521
Score = 197 bits (424), Expect = 3e-049
Identities = 85/95 (89%), Positives = 85/95 (89%)
Frame = +2 / -3
Query: 623 TTGSLATRSGSPTRFRFSACPASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSG 802
TTGSL TRSG PTRFRFSACPA L*LY *VSCMGPRP**GGSV FCSFTRQYPQAN P G
Sbjct: 520 TTGSLDTRSGLPTRFRFSACPACL*LYS*VSCMGPRP**GGSVGFCSFTRQYPQANCPPG 341
Query: 803 AVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
AV HPPVVSWDV PKKAASSRLRV SSPVVPKPGN
Sbjct: 340 AVGHPPVVSWDVCPKKAASSRLRVWSSPVVPKPGN 236
Score = 148 bits (318), Expect = 1e-034
Identities = 67/95 (70%), Positives = 72/95 (75%)
Frame = +1 / -2
Query: 622 YHGVSXXXXXXXXXXXXXXLPGEPVVVLMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIR 801
+HGV+ LP PVVVLMS*LYGSSSIVGWVR LFLHPAVSPGK S R
Sbjct: 521 HHGVARHQVRVAHQVQVQRLPSLPVVVLMS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTR 342
Query: 802 SSRPSTGGFVGRLAEEGGELPPARLLVAGGAEAGE 906
SS PSTG FVGRL+EEGGELPP+ L+VAGGAEAGE
Sbjct: 341 SSWPSTGSFVGRLSEEGGELPPSGLVVAGGAEAGE 237
Score = 122 bits (260), Expect = 1e-026
Identities = 48/55 (87%), Positives = 50/55 (90%)
Frame = -2 / +2
Query: 838 DVPRNHRWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS*VQLQARRASA 674
DVPRN+RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS*VQLQA ASA
Sbjct: 305 DVPRNYRWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS*VQLQASWASA 469
>gb|CF760116.1|CF760116 DSAF1_55_F11.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_55_F11_A011 5', mRNA sequence
Length = 527
Score = 171 bits (368), Expect(2) = 8e-054
Identities = 62/89 (69%), Positives = 74/89 (83%)
Frame = -3 / +3
Query: 717 QLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWR 538
Q+++ YNY AGQA+ ++ +PDLVA DP V+F+TA+WFWMTPQSPKPSCHAVMTG W
Sbjct: 3 QISYNYNYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWMTPQSPKPSCHAVMTGQWT 182
Query: 537 PSATDRAAGRLPGYGLTTNIINGGLECGE 451
PS D AAGRLPGYG+ TNIINGGLECG+
Sbjct: 183 PSGADTAAGRLPGYGVVTNIINGGLECGK 269
Score = 120 bits (257), Expect(2) = 4e-031
Identities = 54/85 (63%), Positives = 60/85 (70%)
Frame = +2 / -2
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPAA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 265 PHSRPPLMMLVTTPYPGNLPAAVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 86
Query: 635 LATRSGSPTRFRFSACPASL*LYL* 709
ATRSG ACPA+ *L L*
Sbjct: 85 DATRSGLARMPAPMACPAAP*L*L* 11
Score = 61.1 bits (127), Expect(2) = 8e-054
Identities = 20/32 (62%), Positives = 26/32 (81%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
DR+G+YKRYC +LGV YGDN+ C +QKP+ *
Sbjct: 291 DRIGFYKRYCDLLGVSYGDNLDCANQKPFNS* 386
Score = 35.9 bits (72), Expect(2) = 4e-031
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2 / -2
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSP TPS Q L* P RS L+ + S P
Sbjct: 373 GFWLAQSKLSP*LTPSKSQ*RL*KPIRSATRLSAPLPHSRP 251
>gb|BE366378.1|BE366378 PI1_32_H10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 454
Score = 171 bits (368), Expect(2) = 2e-053
Identities = 63/94 (67%), Positives = 76/94 (80%)
Frame = -3 / +1
Query: 732 GRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVM 553
GRGPIQ+++ Y Y AGQA+ ++ +PDLVA DP V+F+TA+WFW+TPQSPKPSCHAVM
Sbjct: 1 GRGPIQISYNYKYGAAGQAIGAGILANPDLVASDPTVSFETAVWFWITPQSPKPSCHAVM 180
Query: 552 TGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
TG PS D AGRLPGYG+ TNIINGGLECG+
Sbjct: 181 TGQCTPSGADTPAGRLPGYGVVTNIINGGLECGK 282
Score = 124 bits (265), Expect(2) = 2e-033
Identities = 56/92 (60%), Positives = 62/92 (67%)
Frame = +2 / -3
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHSRPPLMM V PYPG+LPA S +G+ PV+TAWH+GLGDCGVIQN AV T GS
Sbjct: 278 PHSRPPLMMLVTTPYPGNLPAGVSAPDGVHWPVMTAWHDGLGDCGVIQNHTAVSNDTVGS 99
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPR 730
ATRSG ACPA+ L L* MGPR
Sbjct: 98 DATRSGLARMPAPMACPAAPYL*L*EIWMGPR 3
Score = 59.7 bits (124), Expect(2) = 2e-053
Identities = 19/29 (65%), Positives = 25/29 (86%)
Frame = -3 / +1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
DR+G+YKRYC +LGV YGDN+ C +QKP+
Sbjct: 304 DRIGFYKRYCDLLGVRYGDNLDCANQKPF 390
Score = 40.0 bits (81), Expect(2) = 2e-033
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = +2 / -3
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
GFWL + LSPY TPS Q L* P RS L+ + S P
Sbjct: 386 GFWLAQSKLSPYLTPSKSQ*RL*NPIRSETRLSAPLPHSRP 264
>gb|CW430429.1|CW430429 fsbb001f144c05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 746
Score = 149 bits (320), Expect(3) = 6e-051
Identities = 56/94 (59%), Positives = 72/94 (76%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 611 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 432
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLEC 457
VM G++RP+A D AA R G+GL TNI+NGGLEC
Sbjct: 431 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLEC 330
Score = 96.4 bits (204), Expect(3) = 3e-024
Identities = 48/92 (52%), Positives = 53/92 (57%)
Frame = +2 / +1
Query: 458 HSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSL 637
HS PPL M V P P AA S A G SP +T+WH+GLG GVIQN AV A + L
Sbjct: 331 HSSPPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQL 510
Query: 638 ATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 733
AT SG + SACPA *L S MGPRP
Sbjct: 511 ATTSGLRRPSKPSACPAGP*LKFHDSWMGPRP 606
Score = 50.1 bits (103), Expect(3) = 6e-051
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 828 ETTGGWATAPDGPFAWGYCRVKE 760
ETTGGWATAPDG +AWG C +E
Sbjct: 746 ETTGGWATAPDGQYAWGLCYKEE 678
Score = 41.8 bits (85), Expect(3) = 6e-051
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / -1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
+R+G+Y+RYC + V G N+ C Q+PY
Sbjct: 302 NRIGFYQRYCQIFNVDAGANLDCAHQQPY 216
Score = 29.0 bits (57), Expect(3) = 3e-024
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +2 / +1
Query: 779 PQANGPSGAVAHPPVV 826
P A PSGAVA PPVV
Sbjct: 697 PHAYCPSGAVAQPPVV 744
Score = 25.8 bits (50), Expect(3) = 3e-024
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2 / +1
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
G W + L+P T I QYL * P R L + SSP
Sbjct: 220 GCW*AQSRLAPASTLKIWQYLW*KPIRLLTRASSVRLHSSP 342
>gb|CN130014.1|CN130014 RHOH1_38_F07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_38_F07_A002 5', mRNA sequence
Length = 723
Score = 124 bits (266), Expect(2) = 4e-049
Identities = 48/75 (64%), Positives = 60/75 (80%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 498 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 677
Query: 558 VMTGDWRPSATDRAA 514
VM G +RP+ D AA
Sbjct: 678 VMVGRYRPTDADVAA 722
Score = 92.3 bits (195), Expect(2) = 4e-049
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP FG GD TR+RE+AAF Q SHETTGGWATAPDGP+AWG C +E
Sbjct: 285 FPAFGGDGDAATRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEE 431
Score = 90.9 bits (192), Expect(2) = 3e-030
Identities = 42/73 (57%), Positives = 49/73 (67%)
Frame = +2 / -3
Query: 515 AARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 694
AA S + G P +T+WH+GLGD GVIQN AVL AT+GS AT SG P+ + SACPA
Sbjct: 721 AATSASVGRYRPTMTSWHDGLGDLGVIQNHSAVLNATSGSPATTSGLPSPSKPSACPAGP 542
Query: 695 *LYL*VSCMGPRP 733
*L S MGPRP
Sbjct: 541 *LKFHDSWMGPRP 503
Score = 62.9 bits (131), Expect(2) = 3e-030
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2 / -3
Query: 761 SFTRQYPQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPG 904
S +Q P A GPSGAVAHPPVVS ++ + AA+SR RV +SP P G
Sbjct: 430 SSLKQSPHA*GPSGAVAHPPVVSCEICARNAATSRFRVAASPSPPNAG 287
>gb|CW470070.1|CW470070 fsbb001f223b16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223b16, DNA
sequence
Length = 452
Score = 149 bits (321), Expect(2) = 2e-046
Identities = 56/82 (68%), Positives = 64/82 (78%)
Frame = -3 / -1
Query: 684 GQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATDRAAGRL 505
GQA+ ++ +PDLVA D V+ +TA+WFWMTPQSPKPSCH VMTG W PSA D AAGRL
Sbjct: 446 GQAIGAGILANPDLVAADATVSLETAVWFWMTPQSPKPSCHDVMTGQWTPSAADIAAGRL 267
Query: 504 PGYGLTTNIINGGLECGEDRST 439
PGYG+ TNIINGGLECG T
Sbjct: 266 PGYGVVTNIINGGLECGHGADT 201
Score = 116 bits (249), Expect(2) = 1e-026
Identities = 47/74 (63%), Positives = 53/74 (71%)
Frame = +2 / +1
Query: 431 APSVERSSPHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMA 610
A V PHSRPPLMM V PYPG+LPAA S A+G+ PV+T+WH+GLGDCGVIQN A
Sbjct: 193 ATRVSAPWPHSRPPLMMLVTTPYPGNLPAAMSAADGVHCPVMTSWHDGLGDCGVIQNHTA 372
Query: 611 VLKATTGSLATRSG 652
V T S ATRSG
Sbjct: 373 VSNETVASAATRSG 414
Score = 57.9 bits (120), Expect(2) = 2e-046
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3 / -1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
DR+G+YKRYC +LGV YGDN+ C +Q P+
Sbjct: 191 DRIGFYKRYCDLLGVSYGDNLDCANQMPF 105
Score = 24.4 bits (47), Expect(2) = 1e-026
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3 / +2
Query: 333 KASGSRMPCCPRTPLRAYRSTSC 401
+ASG R P C + +A RS++C
Sbjct: 107 RASGWRSPSCRHS*PQASRSSAC 175
>gb|CN137353.1|CN137353 OX1_56_F03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 5', mRNA sequence
Length = 805
Score = 114 bits (244), Expect(2) = 7e-046
Identities = 43/75 (57%), Positives = 57/75 (76%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 577 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 756
Query: 558 VMTGDWRPSATDRAA 514
VM G++RP+A D AA
Sbjct: 757 VMVGEYRPTAADAAA 801
Score = 91.3 bits (193), Expect(2) = 7e-046
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +1
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C +E
Sbjct: 364 FPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYKEE 510
Score = 77.6 bits (163), Expect(2) = 5e-025
Identities = 39/73 (53%), Positives = 44/73 (60%)
Frame = +2 / -3
Query: 515 AARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 694
AA S A G SP +T+WH+GLG GVIQN AV A + LAT SG + SACPA
Sbjct: 800 AAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQLATTSGLRRPSKPSACPAGP 621
Query: 695 *LYL*VSCMGPRP 733
*L S MGPRP
Sbjct: 620 *LKFHDSWMGPRP 582
Score = 58.3 bits (121), Expect(2) = 5e-025
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +2 / -3
Query: 779 PQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
P A PSGAVA PPVVS ++ KKAA+SRLRV SPV GN
Sbjct: 491 PHAYCPSGAVAQPPVVS*EICAKKAATSRLRVLRSPVAANLGN 363
>gb|CN137269.1|CN137269 OX1_56_F03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_56_F03_A002 3', mRNA sequence
Length = 599
Score = 149 bits (320), Expect(3) = 1e-044
Identities = 56/94 (59%), Positives = 72/94 (76%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH
Sbjct: 114 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHE 293
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLEC 457
VM G++RP+A D AA R G+GL TNI+NGGLEC
Sbjct: 294 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLEC 395
Score = 96.4 bits (204), Expect(2) = 6e-021
Identities = 48/92 (52%), Positives = 53/92 (57%)
Frame = +2 / -2
Query: 458 HSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSL 637
HS PPL M V P P AA S A G SP +T+WH+GLG GVIQN AV A + L
Sbjct: 394 HSSPPLTMLVTSPNPAVRLAAASAAVGRYSPTMTSWHDGLGRRGVIQNHSAVRNAVSEQL 215
Query: 638 ATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 733
AT SG + SACPA *L S MGPRP
Sbjct: 214 ATTSGLRRPSKPSACPAGP*LKFHDSWMGPRP 119
Score = 41.8 bits (85), Expect(3) = 1e-044
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
+R+G+Y+RYC + V G N+ C Q+PY
Sbjct: 423 NRIGFYQRYCQIFNVDAGANLDCAHQQPY 509
Score = 28.6 bits (56), Expect(3) = 1e-044
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3 / +3
Query: 804 APDGPFAWGYCRVKE 760
APDG +AWG C +E
Sbjct: 3 APDGQYAWGLCYKEE 47
Score = 25.8 bits (50), Expect(2) = 6e-021
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2 / -2
Query: 335 GFWLPHAMLSPYPTPSIPQYLL**PTRSLAALAPSVERSSP 457
G W + L+P T I QYL * P R L + SSP
Sbjct: 505 GCW*AQSRLAPASTLKIWQYLW*KPIRLLTRASSVRLHSSP 383
>gb|CW430428.1|CW430428 fsbb001f144c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f144c05, DNA
sequence
Length = 718
Score = 109 bits (233), Expect(2) = 2e-044
Identities = 42/75 (56%), Positives = 56/75 (74%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPS H
Sbjct: 492 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSWHE 671
Query: 558 VMTGDWRPSATDRAA 514
VM G++RP+A D AA
Sbjct: 672 VMVGEYRPTAADAAA 716
Score = 91.3 bits (193), Expect(2) = 2e-044
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C +E
Sbjct: 279 FPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYKEE 425
Score = 71.6 bits (150), Expect(2) = 3e-023
Identities = 38/73 (52%), Positives = 43/73 (58%)
Frame = +2 / -1
Query: 515 AARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGSLATRSGSPTRFRFSACPASL 694
AA S A G SP +T+ H+GLG GVIQN AV A + LAT SG + SACPA
Sbjct: 715 AAASAAVGRYSPTMTSCHDGLGRRGVIQNHSAVRNAVSEQLATTSGLRRPSKPSACPAGP 536
Query: 695 *LYL*VSCMGPRP 733
*L S MGPRP
Sbjct: 535 *LKFHDSWMGPRP 497
Score = 58.3 bits (121), Expect(2) = 3e-023
Identities = 27/43 (62%), Positives = 30/43 (69%)
Frame = +2 / -1
Query: 779 PQANGPSGAVAHPPVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
P A PSGAVA PPVVS ++ KKAA+SRLRV SPV GN
Sbjct: 406 PHAYCPSGAVAQPPVVS*EICAKKAATSRLRVLRSPVAANLGN 278
>gb|CW263590.1|CW263590 104_731_11230799_148_35217_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230799, DNA
sequence
Length = 583
Score = 164 bits (353), Expect(2) = 7e-043
Identities = 63/96 (65%), Positives = 78/96 (81%)
Frame = -3 / -2
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + +G+P++VA DP VAFKTA+WFWMTP+SPKPSCH
Sbjct: 495 YHGRGPIQLSWNFNYGPAGQALGFDGLGNPEVVAGDPEVAFKTALWFWMTPRSPKPSCHD 316
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGE 451
VM G +RP+ D AA R G+GLTTNIINGG+ECG+
Sbjct: 315 VMVGRYRPTDADVAANRTAGFGLTTNIINGGIECGK 208
Score = 111 bits (236), Expect = 2e-023
Identities = 53/93 (56%), Positives = 61/93 (65%)
Frame = +2 / +2
Query: 455 PHSRPPLMMFVVRPYPGSLPAARSVAEGLQSPVITAWHEGLGDCGVIQNQMAVLKATTGS 634
PHS PPL+M VV P P L AA S + G P +T+ H+GLGD GVIQN AVL AT+GS
Sbjct: 212 PHSMPPLIMLVVSPNPAVLFAATSASVGRYRPTMTS*HDGLGDLGVIQNHSAVLNATSGS 391
Query: 635 LATRSGSPTRFRFSACPASL*LYL*VSCMGPRP 733
AT SG P+ + SACPA *L S MGPRP
Sbjct: 392 PATTSGLPSPSKPSACPAGP*LKFHDSWMGPRP 490
Score = 31.3 bits (62), Expect(2) = 7e-043
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3 / -2
Query: 435 GAKAAKDRVGYYKRYCGMLG 376
G DR+G+++RYC +LG
Sbjct: 204 GVPQVDDRIGFFRRYCELLG 145
>gb|CN130255.1|CN130255 RHOH1_40_F08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 3', mRNA sequence
Length = 632
Score = 143 bits (307), Expect(3) = 3e-042
Identities = 55/94 (58%), Positives = 71/94 (75%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHA 559
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+ FWMTP+ PKPSCH
Sbjct: 111 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALCFWMTPRRPKPSCHE 290
Query: 558 VMTGDWRPSATDRAAGRLPGYGLTTNIINGGLEC 457
VM G++RP+A D AA R G+GL TNI+NGGLEC
Sbjct: 291 VMVGEYRPTAADAAANRTAGFGLVTNIVNGGLEC 392
Score = 41.8 bits (85), Expect(3) = 3e-042
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
+R+G+Y+RYC + V G N+ C Q+PY
Sbjct: 420 NRIGFYQRYCQIFNVDAGANLDCAHQQPY 506
Score = 26.7 bits (52), Expect(3) = 3e-042
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3 / +3
Query: 801 PDGPFAWGYCRVKE 760
PDG +AWG C +E
Sbjct: 3 PDGQYAWGLCYKEE 44
>gb|BE597906.1|BE597906 PI1_66_H02.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 708
Score = 116 bits (249), Expect(3) = 7e-042
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = -3 / +2
Query: 702 YNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATD 523
YNY AG+A+ ++L+ +PDLVA DPVV+FKTA+WFWMT + KPSCHAV+TG W P+A D
Sbjct: 104 YNYGPAGRAIGVDLLNNPDLVATDPVVSFKTALWFWMTARDNKPSCHAVITGQWTPTAAD 283
Query: 522 RAAGR 508
RAAGR
Sbjct: 284 RAAGR 298
Score = 51.9 bits (107), Expect(3) = 7e-042
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3 / +2
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
DR+G+YKRYC + +GYG N+ C Q+P+
Sbjct: 380 DRIGFYKRYCDVFRIGYGSNLDCDGQRPF 466
Score = 41.8 bits (85), Expect(3) = 7e-042
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3 / +2
Query: 504 PGYGLTTNIINGGLECG 454
PGYG+ TNIINGG+ECG
Sbjct: 305 PGYGVITNIINGGIECG 355
>gb|CN130329.1|CN130329 RHOH1_40_F08.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_40_F08_A002 5', mRNA sequence
Length = 740
Score = 91.3 bits (193), Expect(2) = 3e-038
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C +E
Sbjct: 354 FPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYKEE 500
Score = 89.0 bits (188), Expect(2) = 3e-038
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSC 565
Y+GRGPIQL+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSC
Sbjct: 567 YHGRGPIQLSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSC 740
>gb|CL161206.1|CL161206 104_352_10805558_116_31827_230 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805558, DNA
sequence
Length = 680
Score = 130 bits (278), Expect(2) = 9e-036
Identities = 49/86 (56%), Positives = 64/86 (74%)
Frame = -3 / +3
Query: 714 LTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRP 535
L+ +NY AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH VM G++RP
Sbjct: 3 LSWNFNYGPAGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHEVMVGEYRP 182
Query: 534 SATDRAAGRLPGYGLTTNIINGGLEC 457
+A D AA R G+GL TNI+NGGLEC
Sbjct: 183 TAADAAANRTAGFGLVTNIVNGGLEC 260
Score = 41.8 bits (85), Expect(2) = 9e-036
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +3
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
+R+G+Y+RYC + V G N+ C Q+PY
Sbjct: 288 NRIGFYQRYCQIFNVDAGANLDCAHQQPY 374
>gb|CW388024.1|CW388024 fsbb001f072j20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072j20, DNA
sequence
Length = 694
Score = 100 bits (212), Expect(3) = 4e-035
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3 / +1
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQ 757
FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC +E+
Sbjct: 322 FPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYKEEK 471
Score = 46.0 bits (94), Expect(3) = 4e-035
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / +1
Query: 663 LVGDPDLVARDPVVAFKTAIWFWM 592
++ DPDLVA D V+F+TA+WFWM
Sbjct: 622 ILDDPDLVATDATVSFETAVWFWM 693
Score = 41.8 bits (85), Expect(3) = 4e-035
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQAL 673
YYGRGPIQ+++ YNY AG+A+
Sbjct: 544 YYGRGPIQISYNYNYGPAGEAI 609
>gb|CW022215.1|CW022215 104_161_10431706_5_30007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431706, DNA
sequence
Length = 609
Score = 94.1 bits (199), Expect(2) = 6e-035
Identities = 34/38 (89%), Positives = 35/38 (92%)
Frame = -2 / -1
Query: 820 RWMGDCSGWTVCLGILPGEGTETDGPTLLWTRTHTANS 707
RWM +CSGWTVCLGILPGEGTE GPTLLWTRTHTANS
Sbjct: 201 RWMANCSGWTVCLGILPGEGTEPHGPTLLWTRTHTANS 88
Score = 85.4 bits (180), Expect(2) = 5e-030
Identities = 37/45 (82%), Positives = 37/45 (82%)
Frame = +2 / +1
Query: 686 ASL*LYL*VSCMGPRP**GGSVCFCSFTRQYPQANGPSGAVAHPP 820
A L L *VSCMGPRP**GGSV FCSFTRQYPQAN P GAV HPP
Sbjct: 67 ADLILAY*VSCMGPRP**GGSVGFCSFTRQYPQANCPPGAVGHPP 201
Score = 75.3 bits (158), Expect(2) = 6e-035
Identities = 29/30 (96%), Positives = 30/30 (100%)
Frame = -3 / -3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTG 817
FPGFGTTGD+QTRRRELAAFFGQTSHETTG
Sbjct: 409 FPGFGTTGDDQTRRRELAAFFGQTSHETTG 320
Score = 73.9 bits (155), Expect(2) = 4e-025
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 703 LMS*LYGSSSIVGWVRLFLFLHPAVSPGKRSIRSSRPST 819
L+S*LYGSSSIVGWVR LFLHPAVSPGK S RSS PST
Sbjct: 84 LLS*LYGSSSIVGWVRGVLFLHPAVSPGKLSTRSSWPST 200
Score = 67.5 bits (141), Expect(2) = 5e-030
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +2 / +3
Query: 818 PVVSWDVWPKKAASSRLRVCSSPVVPKPGN 907
PVVSWDV PKKAASSRLRV SSPVVPKPGN
Sbjct: 321 PVVSWDVCPKKAASSRLRVWSSPVVPKPGN 410
Score = 62.5 bits (130), Expect(2) = 4e-025
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1 / +2
Query: 817 TGGFVGRLAEEGGELPPARLLVAGGAEAGE 906
TG FVGRL+EEGGELPP+ L+VAGGAEAGE
Sbjct: 320 TGSFVGRLSEEGGELPPSGLVVAGGAEAGE 409
>gb|CF486513.1|CF486513 POL1_38_D07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 3', mRNA sequence
Length = 635
Score = 123 bits (264), Expect(2) = 7e-034
Identities = 46/77 (59%), Positives = 59/77 (76%)
Frame = -3 / +1
Query: 687 AGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATDRAAGR 508
AGQAL + + +P++VA AF+TA+WFWMTP+ PKPSCH VM G++RP+A D AA R
Sbjct: 10 AGQALGFDGLRNPEVVANCSETAFRTALWFWMTPRRPKPSCHEVMVGEYRPTAADAAANR 189
Query: 507 LPGYGLTTNIINGGLEC 457
G+GL TNI+NGGLEC
Sbjct: 190 TAGFGLVTNIVNGGLEC 240
Score = 41.8 bits (85), Expect(2) = 7e-034
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3 / +1
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
+R+G+Y+RYC + V G N+ C Q+PY
Sbjct: 268 NRIGFYQRYCQIFNVDAGANLDCAHQQPY 354
>gb|CN125314.1|CN125314 RHOH1_10_G12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_G12_A002 3', mRNA sequence
Length = 485
Score = 122 bits (260), Expect(2) = 4e-030
Identities = 49/79 (62%), Positives = 61/79 (77%)
Frame = -3 / +1
Query: 687 AGQALNLNLVGDPDLVARDPVVAFKTAIWFWMTPQSPKPSCHAVMTGDWRPSATDRAAGR 508
AGQAL + +G+P++VA DP V KTA+WFWMT +SPKPS H VM G +RP+ D AA R
Sbjct: 1 AGQALGFDGLGNPEVVAGDPGVE*KTALWFWMTRRSPKPSRHDVMVGRYRPTDADVAANR 180
Query: 507 LPGYGLTTNIINGGLECGE 451
G+GLTTNIINGG+ECG+
Sbjct: 181 TAGFGLTTNIINGGIECGK 237
Score = 31.3 bits (62), Expect(2) = 4e-030
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3 / +1
Query: 435 GAKAAKDRVGYYKRYCGMLG 376
G DR+G+++RYC +LG
Sbjct: 241 GVPQVDDRIGFFRRYCELLG 300
>gb|CW454488.1|CW454488 fsbb001f198p08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198p08, DNA
sequence
Length = 772
Score = 69.8 bits (146), Expect(4) = 4e-029
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = -3 / +3
Query: 426 AAKDRVGYYKRYCGMLGVGYGDNMACGSQKPYGG* 322
AAKDRVGYYKRY ML V YGDN+AC QKPYGG*
Sbjct: 87 AAKDRVGYYKRYSDMLRVRYGDNIACKDQKPYGG* 191
Score = 67.0 bits (140), Expect(3) = 2e-022
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = -2 / +2
Query: 424 RQGPGRLLQEVLRYARSGVRGQHGMREPEALRRMMTL 314
RQGPGRLLQEVLRYA S +RGQH ++ PEALRR+ T+
Sbjct: 89 RQGPGRLLQEVLRYAPSALRGQHRLQGPEALRRLTTI 199
Score = 66.6 bits (139), Expect(4) = 4e-029
Identities = 25/31 (80%), Positives = 29/31 (93%)
Frame = -3 / +3
Query: 519 AAGRLPGYGLTTNIINGGLECGEDRSTDGAK 427
AAGRLPGYG+TTNIINGG+ECG+ +STD AK
Sbjct: 3 AAGRLPGYGVTTNIINGGMECGKGQSTDAAK 95
Score = 55.1 bits (114), Expect(3) = 2e-022
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = -2 / +2
Query: 514 GEAPRIRPDHEHHQRWSRVRRGPLHRRRQ 428
GEAPR+ DH+HHQR VR+GP+HRRRQ
Sbjct: 8 GEAPRVWRDHQHHQRRDGVRQGPVHRRRQ 94
Score = 24.9 bits (48), Expect(4) = 4e-029
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 281 FTCVCLST*RINQASSEPT 225
FTCVCLS+* +S+ T
Sbjct: 222 FTCVCLSS*ENKDQASKRT 278
Score = 23.5 bits (45), Expect(4) = 4e-029
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3 / +3
Query: 306 IYGCCNASLHVCL 268
IYGCC VCL
Sbjct: 201 IYGCCKPFTCVCL 239
Score = 22.6 bits (43), Expect(3) = 2e-022
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3 / +2
Query: 285 SLHVCLPLYLKNKSS*QRTY 226
+ HVCLPL L+ S +TY
Sbjct: 218 AFHVCLPL*LRK*RSS*QTY 277
>gb|CW275250.1|CW275250 104_748_11404861_148_35382_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404861, DNA
sequence
Length = 627
Score = 85.8 bits (181), Expect(4) = 2e-028
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AG+ + + +G+PD+VA+DPV+AFKTA+WFWM
Sbjct: 345 YYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWM 199
Score = 36.8 bits (74), Expect(4) = 2e-028
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3 / -1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G+++ C
Sbjct: 96 RVGYYKQYCQQFGVDPGNSLTC 31
Score = 35.4 bits (71), Expect(4) = 2e-028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3 / -3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHET 823
+P F G E +RE+AAFF +HET
Sbjct: 607 YPAFAHGGTEADGKREIAAFFAHVTHET 524
Score = 27.6 bits (54), Expect(4) = 2e-028
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2 / -3
Query: 514 GEAPRIRPDHEHHQRWSRVRR 452
G+A R+R H+ H+R RV+R
Sbjct: 184 GDAARVRRHHQGHRRRPRVQR 122
>gb|AW922776.1|AW922776 DG1_46_C01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 737
Score = 81.3 bits (171), Expect(4) = 3e-028
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 217 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 363
Score = 38.6 bits (78), Expect(4) = 3e-028
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G N+ C
Sbjct: 466 RVGYYKQYCQQFGVDPGSNLTC 531
Score = 35.9 bits (72), Expect(4) = 3e-028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3 / +1
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHET 823
+ GF G E +RE+AAFF +HET
Sbjct: 43 YSGFAQGGSEDDGKREIAAFFAHATHET 126
Score = 26.3 bits (51), Expect(4) = 3e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 391 GFGATIRAINGALEC 435
>gb|CX613448.1|CX613448 GABR1_8_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_8_E12_A002 3', mRNA sequence
Length = 722
Score = 81.3 bits (171), Expect(4) = 3e-028
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 195 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 341
Score = 38.6 bits (78), Expect(4) = 3e-028
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G N+ C
Sbjct: 444 RVGYYKQYCQQFGVDPGSNLTC 509
Score = 35.9 bits (72), Expect(4) = 3e-028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHET 823
+ GF G E +RE+AAFF +HET
Sbjct: 21 YSGFAQGGSEDDGKREIAAFFAHATHET 104
Score = 26.3 bits (51), Expect(4) = 3e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 369 GFGATIRAINGALEC 413
>gb|CX610007.1|CX610007 ANR1_16_C10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_C10_A002 3', mRNA sequence
Length = 714
Score = 81.3 bits (171), Expect(4) = 3e-028
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AGQ++ + +G+PD VA+D V+AFK A+WFWM
Sbjct: 345 YYGRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWM 491
Score = 38.6 bits (78), Expect(4) = 3e-028
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3 / +3
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G N+ C
Sbjct: 594 RVGYYKQYCQQFGVDPGSNLTC 659
Score = 35.9 bits (72), Expect(4) = 3e-028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHET 823
+ GF G E +RE+AAFF +HET
Sbjct: 171 YSGFAQGGSEDDGKREIAAFFAHATHET 254
Score = 26.3 bits (51), Expect(4) = 3e-028
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 519 GFGATIRAINGALEC 563
>gb|CW307371.1|CW307371 104_795_11468105_116_35728_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468105, DNA
sequence
Length = 642
Score = 89.0 bits (188), Expect(2) = 3e-028
Identities = 34/45 (75%), Positives = 35/45 (77%)
Frame = -3 / -2
Query: 573 PSCHAVMTGDWRPSATDRAAGRLPGYGLTTNIINGGLECGEDRST 439
PSCH VMTG W PSA D AAGRLPGYG+ TNIINGGLECG T
Sbjct: 641 PSCHDVMTGQWTPSAADIAAGRLPGYGVVTNIINGGLECGHGADT 507
Score = 57.9 bits (120), Expect(2) = 3e-028
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3 / -2
Query: 417 DRVGYYKRYCGMLGVGYGDNMACGSQKPY 331
DR+G+YKRYC +LGV YGDN+ C +Q P+
Sbjct: 497 DRIGFYKRYCDLLGVSYGDNLDCANQMPF 411
>gb|CW276618.1|CW276618 104_750_11405587_148_35398_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405587, DNA
sequence
Length = 582
Score = 100 bits (212), Expect(2) = 9e-027
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3 / -2
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKEQ 757
FPGFGTTG ++RE+AAF QTSHETTGGWA+APDGP+AWGYC +E+
Sbjct: 314 FPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYKEEK 165
Score = 41.8 bits (85), Expect(2) = 9e-027
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = -3 / -2
Query: 738 YYGRGPIQLTHKYNYRLAGQAL 673
YYGRGPIQ+++ YNY AG+A+
Sbjct: 92 YYGRGPIQISYNYNYGPAGEAI 27
>gb|AY047607.1| Sorghum bicolor chitinase-B mRNA, partial cds
Length = 789
Score = 76.2 bits (160), Expect(4) = 8e-025
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 472 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 615
Score = 40.0 bits (81), Expect(4) = 8e-025
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 721 RVGYYKQYCRQLGVDPGPNLTC 786
Score = 27.6 bits (54), Expect(4) = 8e-025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / +1
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFF +HET
Sbjct: 319 GGSVAGKREIAAFFAHVTHET 381
Score = 26.3 bits (51), Expect(4) = 8e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 646 GFGATIRAINGALEC 690
>gb|CD225895.1|CD225895 CCC1_42_B03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_B03_A007 3', mRNA sequence
Length = 653
Score = 76.2 bits (160), Expect(4) = 8e-025
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 166 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 309
Score = 40.0 bits (81), Expect(4) = 8e-025
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 415 RVGYYKQYCRQLGVDPGPNLTC 480
Score = 27.6 bits (54), Expect(4) = 8e-025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / +1
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFF +HET
Sbjct: 13 GGSVAGKREIAAFFAHVTHET 75
Score = 26.3 bits (51), Expect(4) = 8e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 340 GFGATIRAINGALEC 384
>gb|CD222353.1|CD222353 CCC1_21_F09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_F09_A007 3', mRNA sequence
Length = 647
Score = 76.2 bits (160), Expect(4) = 8e-025
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 169 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 312
Score = 40.0 bits (81), Expect(4) = 8e-025
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 418 RVGYYKQYCRQLGVDPGPNLTC 483
Score = 27.6 bits (54), Expect(4) = 8e-025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / +1
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFF +HET
Sbjct: 16 GGSVAGKREIAAFFAHVTHET 78
Score = 26.3 bits (51), Expect(4) = 8e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 343 GFGATIRAINGALEC 387
>gb|CD221995.1|CD221995 CCC1_1_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_C09_A007 3', mRNA sequence
Length = 637
Score = 76.2 bits (160), Expect(4) = 8e-025
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 159 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 302
Score = 40.0 bits (81), Expect(4) = 8e-025
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 408 RVGYYKQYCRQLGVDPGPNLTC 473
Score = 27.6 bits (54), Expect(4) = 8e-025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / +3
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFF +HET
Sbjct: 6 GGSVAGKREIAAFFAHVTHET 68
Score = 26.3 bits (51), Expect(4) = 8e-025
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 333 GFGATIRAINGALEC 377
>gb|AY047608.1| Sorghum bicolor chitinase-B1 mRNA, complete cds
Length = 819
Score = 76.2 bits (160), Expect(4) = 1e-024
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 502 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 645
Score = 39.6 bits (80), Expect(4) = 1e-024
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 751 RVGYYKQYCRQLGVDPGPNLIC 816
Score = 27.6 bits (54), Expect(4) = 1e-024
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / +1
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFF +HET
Sbjct: 349 GGSVAGKREIAAFFAHVTHET 411
Score = 26.3 bits (51), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 676 GFGATIRAINGALEC 720
>gb|BE363714.1|BE363714 WS1_69_C06.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 705
Score = 76.2 bits (160), Expect(4) = 1e-024
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 151 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 294
Score = 40.0 bits (81), Expect(4) = 1e-024
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 400 RVGYYKQYCRQLGVDPGPNLTC 465
Score = 27.2 bits (53), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +1
Query: 867 RRELAAFFGQTSHET 823
+RE+AAFF +HET
Sbjct: 16 KREIAAFFAHVTHET 60
Score = 26.3 bits (51), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 325 GFGATIRAINGALEC 369
>gb|CD226631.1|CD226631 CCC1_47_H05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_47_H05_A007 3', mRNA sequence
Length = 658
Score = 76.2 bits (160), Expect(4) = 1e-024
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 171 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 314
Score = 40.0 bits (81), Expect(4) = 1e-024
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +3
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 420 RVGYYKQYCRQLGVDPGPNLTC 485
Score = 27.2 bits (53), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +3
Query: 867 RRELAAFFGQTSHET 823
+RE+AAFF +HET
Sbjct: 36 KREIAAFFAHVTHET 80
Score = 26.3 bits (51), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +3
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 345 GFGATIRAINGALEC 389
>gb|AW680953.1|AW680953 WS1_9_A06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 536
Score = 76.2 bits (160), Expect(4) = 1e-024
Identities = 26/48 (54%), Positives = 38/48 (79%)
Frame = -3 / +2
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFW 595
YYGRGP+Q++ YNY AG+A+ N + +P+ VA+D V+AFKTA+W+W
Sbjct: 149 YYGRGPLQISWNYNYGPAGKAIGFNGLANPNKVAQDAVIAFKTALWYW 292
Score = 40.0 bits (81), Expect(4) = 1e-024
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / +2
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC LGV G N+ C
Sbjct: 398 RVGYYKQYCRQLGVDPGPNLTC 463
Score = 27.2 bits (53), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / +2
Query: 867 RRELAAFFGQTSHET 823
+RE+AAFF +HET
Sbjct: 14 KREIAAFFAHVTHET 58
Score = 26.3 bits (51), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +2
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 323 GFGATIRAINGALEC 367
>gb|CW056944.1|CW056944 104_298_10517953_114_30151 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517953, DNA
sequence
Length = 652
Score = 80.8 bits (170), Expect(4) = 1e-024
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = -3 / -1
Query: 753 QTDPPYYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
Q YYGRGP+Q++ YNY AGQ++ + +GDPD VAR VVAF+ A+W+WM
Sbjct: 403 QAGKGYYGRGPLQISWNYNYGPAGQSIGFDGLGDPDAVARSAVVAFRAALWYWM 242
Score = 35.9 bits (72), Expect(4) = 1e-024
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3 / -1
Query: 426 AAKDRVGYYKRYCGMLGVGYGDNMAC 349
+ DRV YYK++C GV G N+ C
Sbjct: 145 SVNDRVAYYKQFCQDFGVDPGSNLTC 68
Score = 30.4 bits (60), Expect(4) = 1e-024
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3 / -3
Query: 885 GDEQTRRRELAAFFGQTSHET 823
G +RE+AAFFG +HET
Sbjct: 650 GTVDDSKREIAAFFGNANHET 588
Score = 26.3 bits (51), Expect(4) = 1e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 208 GFGATIRAINGALEC 164
>gb|CW448428.1|CW448428 fsbb001f182a11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182a11, DNA
sequence
Length = 633
Score = 85.8 bits (181), Expect(3) = 5e-024
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = -3 / -3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AG+ + + +G+PD+VA+DPV+AFKTA+WFWM
Sbjct: 556 YYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWM 410
Score = 36.8 bits (74), Expect(3) = 5e-024
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3 / -3
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G+++ C
Sbjct: 307 RVGYYKQYCQQFGVDPGNSLTC 242
Score = 27.6 bits (54), Expect(3) = 5e-024
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2 / -2
Query: 514 GEAPRIRPDHEHHQRWSRVRR 452
G+A R+R H+ H+R RV+R
Sbjct: 395 GDAARVRRHHQGHRRRPRVQR 333
>gb|CW066077.1|CW066077 104_313_10523499_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523499, DNA
sequence
Length = 537
Score = 85.8 bits (181), Expect(3) = 5e-024
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = -3 / -1
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AG+ + + +G+PD+VA+DPV+AFKTA+WFWM
Sbjct: 492 YYGRGPLQISWNYNYGPAGREIGFDGLGNPDMVAQDPVIAFKTALWFWM 346
Score = 36.8 bits (74), Expect(3) = 5e-024
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3 / -1
Query: 414 RVGYYKRYCGMLGVGYGDNMAC 349
RVGYYK+YC GV G+++ C
Sbjct: 243 RVGYYKQYCQQFGVDPGNSLTC 178
Score = 27.6 bits (54), Expect(3) = 5e-024
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2 / -3
Query: 514 GEAPRIRPDHEHHQRWSRVRR 452
G+A R+R H+ H+R RV+R
Sbjct: 331 GDAARVRRHHQGHRRRPRVQR 269
>gb|CF486597.1|CF486597 POL1_38_D07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D07_A002 5', mRNA sequence
Length = 683
Score = 91.3 bits (193), Expect(2) = 6e-024
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +3
Query: 906 FPGFGTTGDEQTRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVKE 760
FP F TGD TR+RE+AAFF Q SHETTGGWATAPDG +AWG C +E
Sbjct: 381 FPKFAATGDLSTRKREVAAFFAQISHETTGGWATAPDGQYAWGLCYKEE 527
Score = 40.9 bits (83), Expect(2) = 6e-024
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -3 / +3
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDP 649
Y+GRGPIQL+ +NY AGQAL + + +P
Sbjct: 594 YHGRGPIQLSWNFNYGPAGQALGFDGLRNP 683
>gb|BE357811.1|BE357811 DG1_22_D10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 624
Score = 84.9 bits (179), Expect(3) = 7e-024
Identities = 29/49 (59%), Positives = 41/49 (83%)
Frame = -3 / +2
Query: 738 YYGRGPIQLTHKYNYRLAGQALNLNLVGDPDLVARDPVVAFKTAIWFWM 592
YYGRGP+Q++ YNY AG+A+ + +G+PD VA+DPV++FKTA+WFWM
Sbjct: 71 YYGRGPLQISWNYNYGPAGKAIGFDGLGNPDKVAQDPVISFKTALWFWM 217
Score = 38.6 bits (78), Expect(3) = 7e-024
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3 / +2
Query: 426 AAKDRVGYYKRYCGMLGVGYGDNMAC 349
A RVGYYK YC GV G+N+ C
Sbjct: 308 AVNARVGYYKDYCKQFGVDPGNNLTC 385
Score = 26.3 bits (51), Expect(3) = 7e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3 / +2
Query: 501 GYGLTTNIINGGLEC 457
G+G T ING LEC
Sbjct: 245 GFGATIRAINGALEC 289
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,034,731,709
Number of Sequences: 832831
Number of extensions: 16129117
Number of successful extensions: 138032
Number of sequences better than 1.0e-020: 112
length of database: 163,786,556
effective HSP length: 55
effective length of database: 117,980,851
effective search space used: 29141270197
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)