TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP932582.1|BP932582 BP932582 full-length enriched poplar... 136 7e-032
gb|BP933583.1|BP933583 BP933583 full-length enriched poplar... 136 7e-032
gb|AJ770189.1|AJ770189 AJ770189 Populus euphratica leaf 3-6... 106 7e-023
>gb|BP932582.1|BP932582 BP932582 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-037_M07.r 3', mRNA sequence
Length = 563
Score = 136 bits (292), Expect = 7e-032
Identities = 47/67 (70%), Positives = 56/67 (83%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL+PWI+ K+EN PDPPC RAMS+EPCFH PFYDCKA+K D G +VP+VRHCED+S
Sbjct: 410 GLRPWILYKTENDTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGTLVPHVRHCEDIS 231
Query: 192 WGLKIVD 212
WGLK+VD
Sbjct: 230 WGLKVVD 210
>gb|BP933583.1|BP933583 BP933583 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-053_K10.r 3', mRNA sequence
Length = 617
Score = 136 bits (292), Expect = 7e-032
Identities = 47/67 (70%), Positives = 56/67 (83%)
Frame = +3 / -1
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
GL+PWI+ K+EN PDPPC RAMS+EPCFH PFYDCKA+K D G +VP+VRHCED+S
Sbjct: 413 GLRPWILYKTENDTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGTLVPHVRHCEDIS 234
Query: 192 WGLKIVD 212
WGLK+VD
Sbjct: 233 WGLKVVD 213
>gb|AJ770189.1|AJ770189 AJ770189 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100008E10F1, mRNA sequence
Length = 315
Score = 106 bits (227), Expect = 7e-023
Identities = 37/54 (68%), Positives = 43/54 (79%)
Frame = +3 / -3
Query: 42 ENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLK 203
EN PDPPC RAMS+EPCFH PFYDCKA+K D G +VP+VR CED++WGLK
Sbjct: 313 ENDTAPDPPCCRAMSMEPCFHAPPFYDCKAKKGIDTGALVPHVRPCEDINWGLK 152
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 212,559,104
Number of Sequences: 369679
Number of extensions: 2547961
Number of successful extensions: 54500
Number of sequences better than 1.0e-020: 3
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 5129169552
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)