TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Po... 219 1e-056
gb|CX654077.1|CX654077 PO02012G03 Poplar SC cDNA library Po... 218 3e-056
gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Popul... 214 3e-055
gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Popu... 214 3e-055
gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Popu... 214 3e-055
gb|CF228905.1|CF228905 PtaXM0018G3G0313 Poplar cDNA library... 214 5e-055
gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus t... 210 6e-054
gb|BU863494.1|BU863494 S028G04 Populus imbibed seed cDNA li... 205 1e-052
gb|CX659380.1|CX659380 PO01030A06 Poplar SC cDNA library Po... 205 1e-052
gb|BI127158.1|BI127158 G003P06Y Populus cambium cDNA librar... 205 2e-052
gb|BU834601.1|BU834601 T063D08 Populus apical shoot cDNA li... 205 2e-052
gb|BU834733.1|BU834733 T065A09 Populus apical shoot cDNA li... 205 2e-052
gb|CK093650.1|CK093650 G127P23.3pR Populus tension wood cDN... 205 2e-052
gb|CV266385.1|CV266385 WS02029.B21_O02 PTxN-IB-N-A-11 Popul... 205 2e-052
gb|CV236462.1|CV236462 WS01224.B21.1_D07 PT-GT-FL-A-3 Popul... 204 3e-052
gb|CV245840.1|CV245840 WS0259.B21_I12 PT-MB-N-A-15 Populus ... 204 3e-052
gb|CV251477.1|CV251477 WS0117.B21_C13 PT-P-FL-A-2 Populus t... 204 3e-052
gb|DT518381.1|DT518381 WS02436.B21_P19 PTxD-ICC-N-A-14 Popu... 204 3e-052
gb|DN491298.1|DN491298 UM84TA05.3pR Populus female catkins ... 204 4e-052
gb|AJ779133.1|AJ779133 AJ779133 Populus euphratica cambium ... 190 5e-048
gb|CN549624.1|CN549624 GQ0242.B3_P14 GQ024 Populus trichoca... 177 4e-044
gb|DT519131.1|DT519131 WS02440.B21_G05 PTxD-ICC-N-A-14 Popu... 175 2e-043
gb|CV258754.1|CV258754 WS0201.B21_G19 PTxN-IB-N-A-11 Populu... 174 3e-043
gb|DT522080.1|DT522080 WS02036.B21_A02 PTxN-IB-N-A-11 Popul... 174 3e-043
gb|CF236032.1|CF236032 PtaJXT0029G8G0814 Poplar cDNA librar... 158 4e-042
gb|DT518880.1|DT518880 WS02439.B21_J08 PTxD-ICC-N-A-14 Popu... 171 4e-042
gb|CV266671.1|CV266671 WS0203.B21_K13 PTxN-IB-N-A-11 Populu... 160 6e-039
gb|DT525469.1|DT525469 WS02045.C21_G21 PTxN-IB-N-A-11 Popul... 160 6e-039
gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA librar... 150 5e-036
gb|DT492901.1|DT492901 WS02552.C21_M17 PT-MB-N-A-15 Populus... 146 1e-034
gb|CK089796.1|CK089796 C033P76.3pR Populus strain T89 leave... 140 8e-033
gb|BU816178.1|BU816178 N061E08 Populus bark cDNA library Po... 115 7e-032
gb|BI073086.1|BI073086 C092P58U Populus strain T89 leaves P... 115 3e-025
gb|CV262988.1|CV262988 WS02020.B21_A18 PTxN-IB-N-A-11 Popul... 106 9e-023
>gb|CX658030.1|CX658030 PO01008D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01008D12 5', mRNA sequence
Length = 653
Score = 219 bits (473), Expect = 1e-056
Identities = 85/105 (80%), Positives = 94/105 (89%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTIQ VCG V CATV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 234 SLNLTISEPGPSTIQNVCGTVKCATVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 413
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 414 VLFGDYGFTGTLSRTWFKTVDQLPMNIGDKHYDPLFPFGFGLTTK 548
Score = 123 bits (264), Expect = 7e-028
Identities = 58/84 (69%), Positives = 60/84 (71%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP TS PWPSLPGSQAAT A G ITTGRP M
Sbjct: 490 FIGS*STVLNHVRESVPVKP*SPNRTSATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 311
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TVA T P T +VLGPGS IV+F
Sbjct: 310 TVAHFTVPQTF*IVLGPGSDIVKF 239
>gb|CX654077.1|CX654077 PO02012G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012G03 5', mRNA sequence
Length = 608
Score = 218 bits (470), Expect = 3e-056
Identities = 84/105 (80%), Positives = 94/105 (89%)
Frame = +1 / +1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI +PGPSTIQ VCG V CATV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 163 SLNLTISQPGPSTIQNVCGTVKCATVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 342
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 343 VLFGDYGFTGTLSRTWFKTVDQLPMNIGDKHYDPLFPFGFGLTTK 477
Score = 121 bits (259), Expect = 3e-027
Identities = 57/84 (67%), Positives = 59/84 (70%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP TS PWPSLPGSQAAT A G ITTGRP M
Sbjct: 419 FIGS*STVLNHVRESVPVKP*SPNRTSATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 240
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TVA T P T +VLGPG IV+F
Sbjct: 239 TVAHFTVPQTF*IVLGPGCDIVKF 168
>gb|CV236845.1|CV236845 WS01225.B21.1_L03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_L03 3', mRNA sequence
Length = 893
Score = 214 bits (462), Expect = 3e-055
Identities = 82/105 (78%), Positives = 92/105 (87%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTIQ VCG V C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 435 SLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 256
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGL+T+
Sbjct: 255 ALFGDYGFTGTLSRTWFKTVDQLPMNIGDQHYDPLFPFGFGLSTK 121
Score = 119 bits (255), Expect = 1e-026
Identities = 56/84 (66%), Positives = 58/84 (69%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP S PWPSLPGSQAAT A G ITTGRP M
Sbjct: 179 FIGS*STVLNHVRESVPVKP*SPNRASATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 358
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TV T P T +VLGPGS IV+F
Sbjct: 359 TVTHFTVPQTF*IVLGPGSDIVKF 430
>gb|CV254903.1|CV254903 WS02411.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_I11 3', mRNA sequence
Length = 551
Score = 214 bits (462), Expect = 3e-055
Identities = 82/105 (78%), Positives = 92/105 (87%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTIQ VCG V C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 448 SLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 269
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGL+T+
Sbjct: 268 ALFGDYGFTGTLSRTWFKTVDQLPMNIGDQHYDPLFPFGFGLSTK 134
Score = 119 bits (255), Expect = 1e-026
Identities = 56/84 (66%), Positives = 58/84 (69%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP S PWPSLPGSQAAT A G ITTGRP M
Sbjct: 192 FIGS*STVLNHVRESVPVKP*SPNRASATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 371
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TV T P T +VLGPGS IV+F
Sbjct: 372 TVTHFTVPQTF*IVLGPGSDIVKF 443
>gb|CV255036.1|CV255036 WS02411.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_O03 3', mRNA sequence
Length = 778
Score = 214 bits (462), Expect = 3e-055
Identities = 82/105 (78%), Positives = 92/105 (87%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTIQ VCG V C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 448 SLNLTISEPGPSTIQNVCGTVKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 269
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGL+T+
Sbjct: 268 ALFGDYGFTGTLSRTWFKTVDQLPMNIGDQHYDPLFPFGFGLSTK 134
Score = 119 bits (255), Expect = 1e-026
Identities = 56/84 (66%), Positives = 58/84 (69%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP S PWPSLPGSQAAT A G ITTGRP M
Sbjct: 192 FIGS*STVLNHVRESVPVKP*SPNRASATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 371
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TV T P T +VLGPGS IV+F
Sbjct: 372 TVTHFTVPQTF*IVLGPGSDIVKF 443
>gb|CF228905.1|CF228905 PtaXM0018G3G0313 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 448
Score = 214 bits (461), Expect = 5e-055
Identities = 82/104 (78%), Positives = 92/104 (88%)
Frame = +1 / +3
Query: 4 MNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDV 183
+NLTI EPGPSTI+ VCG V C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ DV
Sbjct: 3 LNLTISEPGPSTIKNVCGTVKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVADV 182
Query: 184 LFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTGTL RTWFK+VDQLPMN GD+HYDPLFP GFGLTT+
Sbjct: 183 LFGDYGFTGTLSRTWFKTVDQLPMNIGDKHYDPLFPFGFGLTTK 314
Score = 122 bits (262), Expect = 1e-027
Identities = 57/84 (67%), Positives = 59/84 (70%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS ST LNHVR SVPVKP*SP TS PWPSLPGSQAAT A G ITTGRP M
Sbjct: 256 FIGS*STVLNHVRESVPVKP*SPNRTSATPWPSLPGSQAATRASIKLTYGWITTGRPEMM 77
Query: 77 TVAQGTAPHTVWMVLGPGSGIVRF 6
TV T P T +VLGPGS IV+F
Sbjct: 76 TVTHFTVPQTFLIVLGPGSDIVKF 5
>gb|CV270069.1|CV270069 WS0151.B21_A03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_A03 3', mRNA sequence
Length = 583
Score = 210 bits (453), Expect = 6e-054
Identities = 80/105 (76%), Positives = 92/105 (87%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S++LTI EPGPSTIQ VCG + C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 449 SLSLTISEPGPSTIQNVCGTIKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 270
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLFGDYGFTGTL +TWFK+VDQLPM+ GD HYDPLFP GFGLTT+
Sbjct: 269 VLFGDYGFTGTLSQTWFKTVDQLPMDIGDRHYDPLFPFGFGLTTK 135
Score = 110 bits (234), Expect = 1e-023
Identities = 53/82 (64%), Positives = 55/82 (67%)
Frame = -3 / +1
Query: 254 IGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMST 75
IGS ST LNHV SVPVKP*SP TS PWPSLPGSQAAT A G ITTGRP M T
Sbjct: 196 IGS*STVLNHVCESVPVKP*SPNRTSATPWPSLPGSQAATRASIKLTYGWITTGRPEMMT 375
Query: 74 VAQGTAPHTVWMVLGPGSGIVR 9
V P T +VLGPGS IV+
Sbjct: 376 VTHFIVPQTF*IVLGPGSDIVK 441
>gb|BU863494.1|BU863494 S028G04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 584
Score = 205 bits (443), Expect = 1e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 186 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 365
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 366 NLFGDYGFTGNLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 500
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR +PVKP*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 442 FIGSWSTVLNHVRARLPVKP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 263
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 262 TTTHLTAPHTLLMVLGPGSDIVR 194
>gb|CX659380.1|CX659380 PO01030A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01030A06 5', mRNA sequence
Length = 702
Score = 205 bits (443), Expect = 1e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 194 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 373
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 374 NLFGDYGFTGNLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 508
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR +PVKP*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 450 FIGSWSTVLNHVRARLPVKP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 271
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 270 TTTHLTAPHTLLMVLGPGSDIVR 202
>gb|BI127158.1|BI127158 G003P06Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 528
Score = 205 bits (442), Expect = 2e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 110 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 289
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 290 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 424
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 366 FIGSWSTVLNHVRASLPVNP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 187
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 186 TTTHLTAPHTLLMVLGPGSDIVR 118
>gb|BU834601.1|BU834601 T063D08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 623
Score = 205 bits (442), Expect = 2e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 77 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 256
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 257 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 391
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / -3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 333 FIGSWSTVLNHVRASLPVNP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 154
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 153 TTTHLTAPHTLLMVLGPGSDIVR 85
>gb|BU834733.1|BU834733 T065A09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 625
Score = 205 bits (442), Expect = 2e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 84 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 263
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 264 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 398
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / -1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 340 FIGSWSTVLNHVRASLPVNP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 161
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 160 TTTHLTAPHTLLMVLGPGSDIVR 92
>gb|CK093650.1|CK093650 G127P23.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G127P23 3', mRNA sequence
Length = 836
Score = 205 bits (442), Expect = 2e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 605 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 426
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 425 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 291
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 349 FIGSWSTVLNHVRASLPVNP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDIT 528
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 529 TTTHLTAPHTLLMVLGPGSDIVR 597
>gb|CV266385.1|CV266385 WS02029.B21_O02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_O02 3', mRNA sequence
Length = 728
Score = 205 bits (442), Expect = 2e-052
Identities = 80/105 (76%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 705 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 526
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 525 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 391
Score = 131 bits (281), Expect = 3e-030
Identities = 57/83 (68%), Positives = 62/83 (74%)
Frame = -3 / +2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 449 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDIT 628
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 629 TTTHLTAPHTLLMVLGPGSDIVR 697
>gb|CV236462.1|CV236462 WS01224.B21.1_D07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_D07 3', mRNA sequence
Length = 915
Score = 204 bits (441), Expect = 3e-052
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C ++ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 548 SSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 369
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 368 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 234
Score = 128 bits (275), Expect = 2e-029
Identities = 56/83 (67%), Positives = 61/83 (73%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 292 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDIT 471
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
TAPHT+ MVLGPGS IVR
Sbjct: 472 MTTHLTAPHTLLMVLGPGSDIVR 540
>gb|CV245840.1|CV245840 WS0259.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_I12 3', mRNA sequence
Length = 585
Score = 204 bits (441), Expect = 3e-052
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C ++ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 550 SSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 371
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 370 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 236
Score = 128 bits (275), Expect = 2e-029
Identities = 56/83 (67%), Positives = 61/83 (73%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 294 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDIT 473
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
TAPHT+ MVLGPGS IVR
Sbjct: 474 MTTHLTAPHTLLMVLGPGSDIVR 542
>gb|CV251477.1|CV251477 WS0117.B21_C13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_C13 3', mRNA sequence
Length = 646
Score = 204 bits (441), Expect = 3e-052
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = +1 / -3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C ++ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 548 SSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 369
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 368 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 234
Score = 128 bits (275), Expect = 2e-029
Identities = 56/83 (67%), Positives = 61/83 (73%)
Frame = -3 / +1
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 292 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDIT 471
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
TAPHT+ MVLGPGS IVR
Sbjct: 472 MTTHLTAPHTLLMVLGPGSDIVR 540
>gb|DT518381.1|DT518381 WS02436.B21_P19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_P19 3', mRNA sequence
Length = 899
Score = 204 bits (441), Expect = 3e-052
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C ++ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 550 SSNLTISEPGPSTINNVCGAVKCVVIVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 371
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 370 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 236
Score = 128 bits (275), Expect = 2e-029
Identities = 56/83 (67%), Positives = 61/83 (73%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP ++
Sbjct: 294 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDIT 473
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
TAPHT+ MVLGPGS IVR
Sbjct: 474 MTTHLTAPHTLLMVLGPGSDIVR 542
>gb|DN491298.1|DN491298 UM84TA05.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM84TA05 3', mRNA sequence
Length = 677
Score = 204 bits (440), Expect = 4e-052
Identities = 79/105 (75%), Positives = 88/105 (83%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V++SGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 544 SSNLTISEPGPSTINNVCGAVKCVVVVLSGRPVVIQPYLEKIDALVAAWLPGTEGQGVVD 365
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 364 NLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 230
Score = 130 bits (279), Expect = 6e-030
Identities = 57/83 (68%), Positives = 61/83 (73%)
Frame = -3 / +3
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR S+PV P*SPK S PWPS+PGSQAAT A R G ITTGRP +
Sbjct: 288 FIGSWSTVLNHVRASLPVNP*SPKRLSTTPWPSVPGSQAATRASIFSR*GWITTGRPDKT 467
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 468 TTTHLTAPHTLLMVLGPGSDIVR 536
>gb|AJ779133.1|AJ779133 AJ779133 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600012A12F1, mRNA sequence
Length = 422
Score = 190 bits (410), Expect = 5e-048
Identities = 75/99 (75%), Positives = 82/99 (82%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI +VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 126 SSNLTISEPGPSTINSVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 305
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLG 297
LFGDY FTG L RTWFK+VDQLPMN GD HYDPLFP G
Sbjct: 306 NLFGDYVFTGNLARTWFKAVDQLPMNVGDPHYDPLFPFG 422
Score = 122 bits (262), Expect = 1e-027
Identities = 54/83 (65%), Positives = 58/83 (69%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGSWST LNHVR PV *SPK S PWPS+PGS AAT A R G ITTGRP ++
Sbjct: 382 FIGSWSTALNHVRARFPVNT*SPKRLSATPWPSVPGSHAATRASIFSR*GWITTGRPDIT 203
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 202 TTTHLTAPHTLLMVLGPGSDIVR 134
>gb|CN549624.1|CN549624 GQ0242.B3_P14 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_P14 5', mRNA sequence
Length = 707
Score = 177 bits (382), Expect = 4e-044
Identities = 71/96 (73%), Positives = 77/96 (80%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 420 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 599
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLF 288
LFGDYGFTG L RTWFK+V LPMN GD YDPLF
Sbjct: 600 NLFGDYGFTGKLARTWFKTVXXLPMNVGDXXYDPLF 707
Score = 121 bits (259), Expect = 3e-027
Identities = 54/83 (65%), Positives = 59/83 (71%)
Frame = -3 / -2
Query: 257 FIGSWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMS 78
FIGS T LNHVR S+PV P*SPK S PWPS+PGS AAT A R G ITTGRP ++
Sbjct: 676 FIGSXXTVLNHVRASLPVNP*SPKRLSATPWPSVPGSHAATRASIFSR*GWITTGRPDIT 497
Query: 77 TVAQGTAPHTVWMVLGPGSGIVR 9
T TAPHT+ MVLGPGS IVR
Sbjct: 496 TTTHLTAPHTLLMVLGPGSDIVR 428
>gb|DT519131.1|DT519131 WS02440.B21_G05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_G05 3', mRNA sequence
Length = 667
Score = 175 bits (376), Expect = 2e-043
Identities = 69/105 (65%), Positives = 80/105 (76%)
Frame = +1 / -1
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTI VCG V C V +SGRP++ + + + ALVAAWLPG+EG + D
Sbjct: 400 SLNLTIAEPGPSTILNVCGNVKCVVVTVSGRPIMKKTYESQIDALVAAWLPGAEG*RVAD 221
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLF DYGFTG LP TWFK+V QLPMN GD HYDPLFP FGLTT+
Sbjct: 220 VLFRDYGFTGKLPWTWFKTVGQLPMNVGDSHYDPLFPYDFGLTTK 86
>gb|CV258754.1|CV258754 WS0201.B21_G19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_G19 3', mRNA sequence
Length = 387
Score = 174 bits (375), Expect = 3e-043
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = +1 / -2
Query: 67 CATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQ 246
C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ DVLFGDYGFTGTL +TWFK+VDQ
Sbjct: 383 CVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVADVLFGDYGFTGTLSQTWFKTVDQ 204
Query: 247 LPMNYGDEHYDPLFPLGFGLTTQ 315
LPMN GD HYDPLFP GFGLTT+
Sbjct: 203 LPMNIGDRHYDPLFPFGFGLTTK 135
>gb|DT522080.1|DT522080 WS02036.B21_A02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_A02 3', mRNA sequence
Length = 387
Score = 174 bits (375), Expect = 3e-043
Identities = 66/83 (79%), Positives = 74/83 (89%)
Frame = +1 / -2
Query: 67 CATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQ 246
C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ DVLFGDYGFTGTL +TWFK+VDQ
Sbjct: 383 CVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVADVLFGDYGFTGTLSQTWFKTVDQ 204
Query: 247 LPMNYGDEHYDPLFPLGFGLTTQ 315
LPMN GD HYDPLFP GFGLTT+
Sbjct: 203 LPMNIGDRHYDPLFPFGFGLTTK 135
>gb|CF236032.1|CF236032 PtaJXT0029G8G0814 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 711
Score = 158 bits (339), Expect(2) = 4e-042
Identities = 63/83 (75%), Positives = 69/83 (83%)
Frame = +1 / +2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S NLTI EPGPSTI VCGAV C V+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D
Sbjct: 245 SSNLTISEPGPSTINNVCGAVKCVVVVISGRPVVIQPYLEKIDALVAAWLPGTEGQGVAD 424
Query: 181 VLFGDYGFTGTLPRTWFKSVDQL 249
LFGDYGFTG L RTWFK+VDQL
Sbjct: 425 NLFGDYGFTGNLARTWFKTVDQL 493
Score = 124 bits (265), Expect = 5e-028
Identities = 54/80 (67%), Positives = 59/80 (73%)
Frame = -3 / -1
Query: 248 SWSTDLNHVRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMSTVA 69
SWST LNHVR +PVKP*SPK S PWPS+PGSQAAT A R G ITTGRP ++T
Sbjct: 492 SWSTVLNHVRARLPVKP*SPKRLSATPWPSVPGSQAATRASIFSR*GWITTGRPDITTTT 313
Query: 68 QGTAPHTVWMVLGPGSGIVR 9
TAPHT+ MVLGPGS IVR
Sbjct: 312 HLTAPHTLLMVLGPGSDIVR 253
Score = 33.1 bits (66), Expect(2) = 4e-042
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1 / +1
Query: 253 MNYGDEHYDPLFPLGFGLTT 312
M GD +YDPLF LG G+ T
Sbjct: 496 MTVGDPNYDPLFXLGLGIPT 555
>gb|DT518880.1|DT518880 WS02439.B21_J08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02439_J08 3', mRNA sequence
Length = 892
Score = 171 bits (367), Expect = 4e-042
Identities = 66/105 (62%), Positives = 78/105 (74%)
Frame = +1 / -2
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTI VCG V C V + GRP++I+P+ + A VAAWLPG EG + D
Sbjct: 468 SLNLTIAEPGPSTILNVCGNVKCVVVTVFGRPIMIEPYESQIDAFVAAWLPGGEG*RVAD 289
Query: 181 VLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
VLF DYGF+G LP WFK+V QLPMN GD HYDPLFP FGL+T+
Sbjct: 288 VLFRDYGFSGKLPWIWFKTVGQLPMNVGDSHYDPLFPYDFGLSTK 154
>gb|CV266671.1|CV266671 WS0203.B21_K13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_K13 3', mRNA sequence
Length = 479
Score = 160 bits (344), Expect = 6e-039
Identities = 61/79 (77%), Positives = 69/79 (87%)
Frame = +1 / -2
Query: 79 LISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMN 258
+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D LFGDYGFTG L RTWFK+VDQLPMN
Sbjct: 478 VISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVDNLFGDYGFTGKLARTWFKTVDQLPMN 299
Query: 259 YGDEHYDPLFPLGFGLTTQ 315
GD HYDPLFP GFG+TT+
Sbjct: 298 VGDPHYDPLFPFGFGITTK 242
>gb|DT525469.1|DT525469 WS02045.C21_G21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02045_G21 3', mRNA sequence
Length = 479
Score = 160 bits (344), Expect = 6e-039
Identities = 61/79 (77%), Positives = 69/79 (87%)
Frame = +1 / -2
Query: 79 LISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMN 258
+ISGRPVVIQP+L + ALVAAWLPG+EGQG+ D LFGDYGFTG L RTWFK+VDQLPMN
Sbjct: 478 VISGRPVVIQPYLEKIDALVAAWLPGTEGQGVVDNLFGDYGFTGKLARTWFKTVDQLPMN 299
Query: 259 YGDEHYDPLFPLGFGLTTQ 315
GD HYDPLFP GFG+TT+
Sbjct: 298 VGDPHYDPLFPFGFGITTK 242
>gb|BU891577.1|BU891577 P052D05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 548
Score = 150 bits (323), Expect = 5e-036
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1 / +3
Query: 1 SMNLTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFLGTVHALVAAWLPGSEGQGITD 180
S+NLTI EPGPSTIQ VCGAV C TV+ISGRPVVIQP++ + ALVAAWLPGSEGQG+ D
Sbjct: 324 SLNLTISEPGPSTIQNVCGAVKCVTVIISGRPVVIQPYVSLMDALVAAWLPGSEGQGVAD 503
Query: 181 VLFGDYGFTGTLPRT 225
VLFGDYGFTGTL RT
Sbjct: 504 VLFGDYGFTGTLSRT 548
Score = 105 bits (224), Expect = 2e-022
Identities = 49/73 (67%), Positives = 51/73 (69%)
Frame = -3 / -2
Query: 224 VRGSVPVKP*SPKSTSVMPWPSLPGSQAATSACTVPRNGCITTGRPLMSTVAQGTAPHTV 45
VR SVPVKP*SP TS PWPSLPGSQAAT A G ITTGRP M TV TAP T
Sbjct: 547 VRESVPVKP*SPNRTSATPWPSLPGSQAATRASIKLTYGWITTGRPEMMTVTHFTAPQTF 368
Query: 44 WMVLGPGSGIVRF 6
+VLGPGS IV+F
Sbjct: 367 *IVLGPGSDIVKF 329
>gb|DT492901.1|DT492901 WS02552.C21_M17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_M17 3', mRNA sequence
Length = 451
Score = 146 bits (313), Expect = 1e-034
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = +1 / -2
Query: 100 VIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYD 279
VIQP+L + ALVAAWLPG+EGQG+ D LFGDYGFTG L RTWFK+VDQLPMN GD HYD
Sbjct: 450 VIQPYLEKIDALVAAWLPGTEGQGVVDNLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYD 271
Query: 280 PLFPLGFGLTTQ 315
PLFP GFG+TT+
Sbjct: 270 PLFPFGFGITTK 235
>gb|CK089796.1|CK089796 C033P76.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C033P76 3', mRNA sequence
Length = 350
Score = 140 bits (300), Expect = 8e-033
Identities = 53/77 (68%), Positives = 62/77 (80%)
Frame = +1 / -1
Query: 79 LISGRPVVIQPFLGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMN 258
+ISGRPVVI P++ + VAAWLP S+GQG+ +VLFGDYGF GT RTWFK+VDQL MN
Sbjct: 350 IISGRPVVIHPYVSLMDVFVAAWLPESKGQGVVNVLFGDYGFPGTFSRTWFKTVDQLLMN 171
Query: 259 YGDEHYDPLFPLGFGLT 309
GD+HYDPLFP GF LT
Sbjct: 170 IGDKHYDPLFPFGFALT 120
>gb|BU816178.1|BU816178 N061E08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 600
Score = 115 bits (245), Expect(2) = 7e-032
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +1 / +1
Query: 115 LGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPL 294
L + L+AAWLPG+EG+GITDV+FGDY F+G LP TWF+ V+QLPMN+ D PLFPL
Sbjct: 181 LEKIDGLIAAWLPGTEGEGITDVIFGDYDFSGRLPVTWFRKVEQLPMNFRDNSDGPLFPL 360
Query: 295 GFGLT 309
GFGLT
Sbjct: 361 GFGLT 375
Score = 41.8 bits (85), Expect(2) = 7e-032
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1 / +1
Query: 10 LTIPEPGPSTIQTVCGAVPCATVLISGRPVVIQPFL 117
L IP G I +V +P +LISGRP+VI+P+L
Sbjct: 73 LAIPFNGADIISSVADKIPTLVILISGRPLVIEPWL 180
>gb|BI073086.1|BI073086 C092P58U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 365
Score = 115 bits (245), Expect(2) = 3e-025
Identities = 43/65 (66%), Positives = 52/65 (80%)
Frame = +1 / +3
Query: 115 LGTVHALVAAWLPGSEGQGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPL 294
L + L+AAWLPG+EG+GITDV+FGDY F+G LP TWF+ V+QLPMN+ D PLFPL
Sbjct: 30 LEKIDGLIAAWLPGTEGEGITDVIFGDYDFSGRLPVTWFRKVEQLPMNFRDNSDGPLFPL 209
Query: 295 GFGLT 309
GFGLT
Sbjct: 210 GFGLT 224
Score = 18.9 bits (35), Expect(2) = 3e-025
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 91 RPVVIQPFL 117
RP+VI+P+L
Sbjct: 3 RPLVIEPWL 29
>gb|CV262988.1|CV262988 WS02020.B21_A18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_A18 3', mRNA sequence
Length = 389
Score = 106 bits (227), Expect = 9e-023
Identities = 39/50 (78%), Positives = 43/50 (86%)
Frame = +1 / -3
Query: 166 QGITDVLFGDYGFTGTLPRTWFKSVDQLPMNYGDEHYDPLFPLGFGLTTQ 315
QG+ D LFGDYGFTG L RTWFK+VDQLPMN GD HYDPLFP GFG+TT+
Sbjct: 387 QGVVDNLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGITTK 238
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 237,390,003
Number of Sequences: 369679
Number of extensions: 2954361
Number of successful extensions: 49206
Number of sequences better than 1.0e-020: 38
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6803947001
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)