TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2188214.2.1
(880 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Popu... 84 3e-032
gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus... 84 3e-032
gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus ... 84 3e-032
gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Po... 85 4e-032
gb|AJ771301.1|AJ771301 AJ771301 Populus euphratica leaf 3-6... 84 2e-031
gb|BU813923.1|BU813923 N022F11 Populus bark cDNA library Po... 84 5e-030
gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus ... 77 7e-030
gb|BP934359.1|BP934359 BP934359 full-length enriched poplar... 77 1e-029
gb|AJ771403.1|AJ771403 AJ771403 Populus euphratica leaf 3-6... 77 1e-029
gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus... 75 2e-029
gb|CX176201.1|CX176201 E09_69-21_09.ab1 leaf inoculated wit... 75 2e-029
gb|CX169902.1|CX169902 E05_69-29_09.ab1 leaf inoculated wit... 75 2e-029
gb|BP931992.1|BP931992 BP931992 full-length enriched poplar... 75 4e-029
gb|CN520196.1|CN520196 GQ0108.B3_D07 GQ010 Populus trichoca... 77 2e-028
gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus... 77 2e-028
gb|DT514302.1|DT514302 WS02424.B21_H04 PTxD-ICC-N-A-14 Popu... 77 2e-028
gb|CV230444.1|CV230444 WS01916.B21_J06 PT-DX-N-A-10 Populus... 77 2e-028
gb|AJ780615.1|AJ780615 AJ780615 Populus euphratica leaf 3-6... 73 2e-026
gb|DT506791.1|DT506791 WS02416.BR_I11 PTxD-ICC-N-A-14 Popul... 74 2e-023
gb|DT511460.1|DT511460 WS02416.B21_I11 PTxD-ICC-N-A-14 Popu... 74 2e-023
gb|CV254547.1|CV254547 WS0241.B21_I11 PTxD-ICC-N-A-14 Popul... 74 2e-023
gb|DT516082.1|DT516082 WS02430.B21_F16 PTxD-ICC-N-A-14 Popu... 74 2e-023
gb|DT519288.1|DT519288 WS02440.B21_P20 PTxD-ICC-N-A-14 Popu... 74 2e-023
gb|CV256668.1|CV256668 WS0244.B21_H19 PTxD-ICC-N-A-14 Popul... 74 2e-023
gb|DT519202.1|DT519202 WS02440.B21_K09 PTxD-ICC-N-A-14 Popu... 74 3e-023
gb|BU816161.1|BU816161 N061D02 Populus bark cDNA library Po... 65 4e-022
gb|DN495565.1|DN495565 N061D02.5pR Populus bark cDNA librar... 65 4e-022
gb|DN486016.1|DN486016 N061D02.3pR Populus bark cDNA librar... 65 4e-022
gb|DT520892.1|DT520892 WS02448.B21_N10 PTxD-ICC-N-A-14 Popu... 71 2e-021
>gb|DT518094.1|DT518094 WS02436.B21_C23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_C23 3', mRNA sequence
Length = 951
Score = 84.5 bits (178), Expect(2) = 3e-032
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 856 VXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
V PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 836 VTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 693
Score = 74.4 bits (156), Expect(2) = 3e-032
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 665 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQ 558
>gb|DT470321.1|DT470321 WS01920.C21_I12 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_I12 3', mRNA sequence
Length = 840
Score = 84.5 bits (178), Expect(2) = 3e-032
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = -1 / -1
Query: 856 VXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
V PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 594 VTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 451
Score = 74.4 bits (156), Expect(2) = 3e-032
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 423 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQ 316
>gb|CV232647.1|CV232647 WS0198.B21_D24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0198_D24 3', mRNA sequence
Length = 780
Score = 84.5 bits (178), Expect(2) = 3e-032
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = -1 / -1
Query: 856 VXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
V PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 594 VTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 451
Score = 74.4 bits (156), Expect(2) = 3e-032
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 423 NKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQ 316
>gb|BU885111.1|BU885111 R020G10 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 527
Score = 84.9 bits (179), Expect(2) = 4e-032
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + V PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 125 ESRDDVTVLPCGHTIHKSCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 283
Score = 73.5 bits (154), Expect(2) = 4e-032
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / +2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 311 NKMVWILCNDCGKSSEVQFHVVAQKCLNCKSYNTRQ 418
>gb|AJ771301.1|AJ771301 AJ771301 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500004F10F1, mRNA sequence
Length = 564
Score = 84.5 bits (178), Expect(2) = 2e-031
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = -1 / -3
Query: 856 VXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
V PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 496 VTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 353
Score = 71.6 bits (150), Expect(2) = 2e-031
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -1 / -3
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+ QFH++A KC NCKSYNTRQ
Sbjct: 325 NKMVWILCNDCGKSSEAQFHVVAQKCLNCKSYNTRQ 218
>gb|BU813923.1|BU813923 N022F11 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 572
Score = 83.5 bits (176), Expect(2) = 5e-030
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = -1 / +2
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 11 PCGHTIHKSCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 142
Score = 68.0 bits (142), Expect(2) = 5e-030
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = -1 / +1
Query: 676 ILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 184 ILCNDCGKSSEVQFHVVAQKCLNCKSYNTRQ 276
>gb|CV246467.1|CV246467 WS01110.B21_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_J17 3', mRNA sequence
Length = 718
Score = 77.1 bits (162), Expect(2) = 7e-030
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A
Sbjct: 531 DTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIA 373
Score = 73.9 bits (155), Expect(2) = 7e-030
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = -1 / -2
Query: 709 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+ ++ +KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 363 MPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 238
>gb|BP934359.1|BP934359 BP934359 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-064_B03.r 3', mRNA sequence
Length = 661
Score = 77.1 bits (162), Expect(2) = 1e-029
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A
Sbjct: 585 DTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIA 427
Score = 73.0 bits (153), Expect(2) = 1e-029
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 399 NKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 292
>gb|AJ771403.1|AJ771403 AJ771403 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500006E11F1, mRNA sequence
Length = 623
Score = 76.7 bits (161), Expect(2) = 1e-029
Identities = 29/44 (65%), Positives = 32/44 (72%)
Frame = -1 / -2
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH CLK Q+ACPLCSKSVCDMSK E+ DME+A
Sbjct: 484 PCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKV*EKFDMEIA 353
Score = 73.5 bits (154), Expect(2) = 1e-029
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 325 NKMVWILCNDCGKSSEVQFHVVAQKCLNCKSYNTRQ 218
>gb|CV274944.1|CV274944 WS0174.B21.1_O02 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_O02 3', mRNA sequence
Length = 940
Score = 74.8 bits (157), Expect(2) = 2e-029
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ ++ ++ +KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 444 EIAATSMPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 301
Score = 74.4 bits (156), Expect(2) = 2e-029
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLS 704
D + C HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A S
Sbjct: 594 DTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIAATS 427
>gb|CX176201.1|CX176201 E09_69-21_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 729
Score = 74.8 bits (157), Expect(2) = 2e-029
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / -3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ ++ ++ +KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 394 EIAATSMPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 251
Score = 74.4 bits (156), Expect(2) = 2e-029
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLS 704
D + C HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A S
Sbjct: 544 DTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIAATS 377
>gb|CX169902.1|CX169902 E05_69-29_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 710
Score = 74.8 bits (157), Expect(2) = 2e-029
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ ++ ++ +KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 287 EIAATSMPETYQNKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 430
Score = 74.4 bits (156), Expect(2) = 2e-029
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLS 704
D + C HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A S
Sbjct: 137 DTMRDITVLRCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIAATS 304
>gb|BP931992.1|BP931992 BP931992 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_H22.r 3', mRNA sequence
Length = 592
Score = 75.3 bits (158), Expect(2) = 4e-029
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = -1 / -3
Query: 856 VXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ PC HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A
Sbjct: 578 ITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIA 435
Score = 73.0 bits (153), Expect(2) = 4e-029
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = -1 / -3
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 407 NKMVWILCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 300
>gb|CN520196.1|CN520196 GQ0108.B3_D07 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D07 5', mRNA sequence
Length = 700
Score = 77.1 bits (162), Expect(2) = 2e-028
Identities = 24/53 (45%), Positives = 37/53 (69%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH++CLK +++CP+CSKS+CDM++ W++LD E+A
Sbjct: 125 DTMRDITVLPCGHTIHLECLKEMEQHYRYSCPVCSKSICDMTRLWKKLDQEIA 283
Score = 69.3 bits (145), Expect(2) = 2e-028
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = -1 / +2
Query: 709 LSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+ ++ +KMV CNDCGA S VQFH++AHKC C SYNTRQ
Sbjct: 293 MPETYQNKMVWXXCNDCGANSHVQFHIVAHKCLRCNSYNTRQ 418
>gb|CV243219.1|CV243219 WS02518.B21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_D22 3', mRNA sequence
Length = 944
Score = 76.7 bits (161), Expect(2) = 2e-028
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH++C+K Q+ACPLCSKS CDMS+ W++LD ++A
Sbjct: 544 ETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKLDQQVA 702
Score = 69.3 bits (145), Expect(2) = 2e-028
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -1 / +1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+V FH++AHKC C SYNT+Q
Sbjct: 727 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTKQ 834
>gb|DT514302.1|DT514302 WS02424.B21_H04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_H04 3', mRNA sequence
Length = 820
Score = 76.7 bits (161), Expect(2) = 2e-028
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH++C+K Q+ACPLCSKS CDMS+ W++LD ++A
Sbjct: 693 ETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKLDQQVA 535
Score = 69.3 bits (145), Expect(2) = 2e-028
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+V FH++AHKC C SYNT+Q
Sbjct: 510 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTKQ 403
>gb|CV230444.1|CV230444 WS01916.B21_J06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_J06 3', mRNA sequence
Length = 748
Score = 76.7 bits (161), Expect(2) = 2e-028
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = -1 / -1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH++C+K Q+ACPLCSKS CDMS+ W++LD ++A
Sbjct: 667 ETTKDIIVLPCGHTIHLECVKEMQQHFQYACPLCSKSYCDMSRVWKKLDQQVA 509
Score = 69.3 bits (145), Expect(2) = 2e-028
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -1 / -1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+V FH++AHKC C SYNT+Q
Sbjct: 484 NKMVWILCNDCGETSEVNFHIVAHKCLKCNSYNTKQ 377
>gb|AJ780615.1|AJ780615 AJ780615 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900010D02F1, mRNA sequence
Length = 675
Score = 73.5 bits (154), Expect(2) = 2e-026
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -3
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 325 NKMVWILCNDCGKSSEVQFHVVAQKCLNCKSYNTRQ 218
Score = 66.1 bits (138), Expect(2) = 2e-026
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -1 / -3
Query: 817 CLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
CLK Q+ACPLCSKSVCDMSK WE+ DME+A
Sbjct: 457 CLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIA 353
>gb|DT506791.1|DT506791 WS02416.BR_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_I11 5', mRNA sequence
Length = 679
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / +1
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 319 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 465
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / +2
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 212 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 310
>gb|DT511460.1|DT511460 WS02416.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_I11 3', mRNA sequence
Length = 679
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / -1
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 361 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -2
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|CV254547.1|CV254547 WS0241.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_I11 3', mRNA sequence
Length = 650
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / -2
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 361 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -3
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|DT516082.1|DT516082 WS02430.B21_F16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_F16 3', mRNA sequence
Length = 536
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / -2
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 361 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -3
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|DT519288.1|DT519288 WS02440.B21_P20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_P20 3', mRNA sequence
Length = 536
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / -2
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 361 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -3
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|CV256668.1|CV256668 WS0244.B21_H19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_H19 3', mRNA sequence
Length = 498
Score = 74.4 bits (156), Expect(2) = 2e-023
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -1 / -3
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 361 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 2e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -1
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|DT519202.1|DT519202 WS02440.B21_K09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_K09 3', mRNA sequence
Length = 633
Score = 73.9 bits (155), Expect(2) = 3e-023
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -1 / -3
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDCG S+VQFH++A KC NCKSYNTRQ
Sbjct: 322 NKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTRQ 215
Score = 54.7 bits (113), Expect(2) = 3e-023
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = -1 / -1
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+S+ W R
Sbjct: 468 IHKSCLKEMWDHYQYACPLCSKSVCDVSEVWGR 370
>gb|BU816161.1|BU816161 N061D02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 65.2 bits (136), Expect(2) = 4e-022
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + + H+ V ILCNDC ++V FH+I KC +CKSYNTR I
Sbjct: 172 EIEATVMPEDYRHRKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTI 318
Score = 59.7 bits (124), Expect(2) = 4e-022
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKS+ DMSK W+R+D E+
Sbjct: 22 DSLKETTVMKCGHTMHGECYDEMIKRDKYCCPICSKSIIDMSKTWKRIDEEI 177
>gb|DN495565.1|DN495565 N061D02.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N061D02 5', mRNA sequence
Length = 603
Score = 65.2 bits (136), Expect(2) = 4e-022
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + + H+ V ILCNDC ++V FH+I KC +CKSYNTR I
Sbjct: 161 EIEATVMPEDYRHRKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTI 307
Score = 59.7 bits (124), Expect(2) = 4e-022
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKS+ DMSK W+R+D E+
Sbjct: 11 DSLKETTVMKCGHTMHGECYDEMIKRDKYCCPICSKSIIDMSKTWKRIDEEI 166
>gb|DN486016.1|DN486016 N061D02.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N061D02 3', mRNA sequence
Length = 548
Score = 65.2 bits (136), Expect(2) = 4e-022
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / -3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + + H+ V ILCNDC ++V FH+I KC +CKSYNTR I
Sbjct: 387 EIEATVMPEDYRHRKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTI 241
Score = 59.7 bits (124), Expect(2) = 4e-022
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKS+ DMSK W+R+D E+
Sbjct: 537 DSLKETTVMKCGHTMHGECYDEMIKRDKYCCPICSKSIIDMSKTWKRIDEEI 382
>gb|DT520892.1|DT520892 WS02448.B21_N10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_N10 3', mRNA sequence
Length = 652
Score = 70.7 bits (148), Expect(2) = 2e-021
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -1 / -3
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+VQFH++A KC NCKSYNT Q
Sbjct: 383 VEIAATPMPEPYQNKMVWILCNDCGKTSEVQFHVVAQKCLNCKSYNTCQ 237
Score = 51.9 bits (107), Expect(2) = 2e-021
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -1 / -1
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWER 731
IH CLK Q+ACPLCSKSVCD+ + W R
Sbjct: 490 IHKSCLKEMWDHYQYACPLCSKSVCDVFEVWGR 392
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 429,121,310
Number of Sequences: 369679
Number of extensions: 6611280
Number of successful extensions: 48335
Number of sequences better than 1.0e-020: 32
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11659099200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)