TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL749763.1|AL749763 AL749763 AN Pinus pinaster cDNA clon... 175 4e-043
gb|AL750502.1|AL750502 AL750502 RN Pinus pinaster cDNA clon... 175 4e-043
gb|BX250958.1|BX250958 BX250958 Pinus pinaster differenciat... 175 4e-043
gb|BX251584.1|BX251584 BX251584 Pinus pinaster differenciat... 175 4e-043
gb|BX251585.1|BX251585 BX251585 Pinus pinaster differenciat... 175 4e-043
gb|BG040133.1|BG040133 NXSI_106_G08_F NXSI (Nsf Xylem Side ... 175 4e-043
gb|CF391740.1|CF391740 RTDR3_11_F12.g1_A022 Loblolly pine r... 175 4e-043
gb|CF398906.1|CF398906 RTDS3_11_D09.b1_A022 Drought-stresse... 175 4e-043
gb|BX676960.1|BX676960 BX676960 RN Pinus pinaster cDNA clon... 175 4e-043
gb|BX677344.1|BX677344 BX677344 RN Pinus pinaster cDNA clon... 175 4e-043
gb|CO166823.1|CO166823 FLD1_64_F08.g1_A029 Root flooded Pin... 175 4e-043
gb|DR116715.1|DR116715 RTMG1_2_G11.b1_A029 Roots minus magn... 175 4e-043
gb|DR116799.1|DR116799 RTMG1_2_G11.g1_A029 Roots minus magn... 175 4e-043
gb|DR385534.1|DR385534 RTHG1_9_F03.b1_A029 Roots plus added... 175 4e-043
gb|DR386084.1|DR386084 RTHG1_12_G09.g1_A029 Roots plus adde... 175 4e-043
gb|BQ106803.1|BQ106803 NXLV089_E08_F NXLV (Nsf Xylem Late w... 170 1e-041
gb|DR059626.1|DR059626 RTNIT1_18_F11.g1_A029 Roots minus ni... 170 1e-041
gb|AW981906.1|AW981906 PC20B06 Pine TriplEx pollen cone lib... 167 7e-041
gb|BX252047.1|BX252047 BX252047 Pinus pinaster differenciat... 167 7e-041
gb|CF476178.1|CF476178 RTWW2_21_H05.g1_A021 Well-watered lo... 167 7e-041
gb|BE607214.1|BE607214 NXCI_034_B09_F NXCI (Nsf Xylem Compr... 164 8e-040
gb|CF473743.1|CF473743 RTWW2_4_D07.g1_A021 Well-watered lob... 163 1e-039
gb|DR090117.1|DR090117 RTAL1_12_G02.g1_A029 Roots plus adde... 163 1e-039
gb|DR682873.1|DR682873 EST1072948 Normalized pine embryo li... 163 1e-039
gb|DT631108.1|DT631108 EST1146039 Normalized pine embryo li... 163 1e-039
gb|CR393912.1|CR393912 CR393912 RN Pinus pinaster cDNA clon... 136 9e-036
gb|AW587623.1|AW587623 ST60F05 Pine TriplEx shoot tip libra... 141 5e-033
gb|BM493350.1|BM493350 NXLV_061_H01_F NXLV (Nsf Xylem Late ... 111 6e-024
>gb|AL749763.1|AL749763 AL749763 AN Pinus pinaster cDNA clone AN07F04 similar to
CYCLIN-DEPENDENT KINASE, mRNA sequence
Length = 591
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 190 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 369
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 370 EPHIMLFRRPLNY 408
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 410 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 231
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 230 VSSVYFSEY*I* 195
>gb|AL750502.1|AL750502 AL750502 RN Pinus pinaster cDNA clone RN03C03 similar to
CYCLIN-DEPENDENT KINASE, mRNA sequence
Length = 534
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 190 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 369
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 370 EPHIMLFRRPLNY 408
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 410 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 231
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 230 VSSVYFSEY*I* 195
>gb|BX250958.1|BX250958 BX250958 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043D09 similar to CYCLIN DEPENDENT KINASES
REGULATORY SUBUNIT, mRNA sequence
Length = 674
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 96 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 275
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 276 EPHIMLFRRPLNY 314
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 316 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 137
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 136 VSSVYFSEY*I* 101
>gb|BX251584.1|BX251584 BX251584 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP051F05 similar to CYCLIN DEPENDENT KINASES
REGULATORY SUBUNIT, mRNA sequence
Length = 724
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 212 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 391
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 392 EPHIMLFRRPLNY 430
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 432 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 253
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 252 VSSVYFSEY*I* 217
>gb|BX251585.1|BX251585 BX251585 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP051F06 similar to CYCLIN DEPENDENT KINASES
REGULATORY SUBUNIT, mRNA sequence
Length = 724
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 212 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 391
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 392 EPHIMLFRRPLNY 430
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 432 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 253
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 252 VSSVYFSEY*I* 217
>gb|BG040133.1|BG040133 NXSI_106_G08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_G08 5' similar to Arabidopsis thaliana
sequence At2g27960 putative cyclin-dependent kinase
regulatory subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 94 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 273
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 274 EPHIMLFRRPLNY 312
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 314 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 135
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 134 VSSVYFSEY*I* 99
>gb|CF391740.1|CF391740 RTDR3_11_F12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_11_F12_A022 5', mRNA
sequence
Length = 794
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 160 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 339
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 340 EPHIMLFRRPLNY 378
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 380 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 201
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 200 VSSVYFSEY*I* 165
>gb|CF398906.1|CF398906 RTDS3_11_D09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_D09_A022 3', mRNA sequence
Length = 737
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / -3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 510 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 331
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 330 EPHIMLFRRPLNY 292
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / +2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 290 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 469
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 470 VSSVYFSEY*I* 505
>gb|BX676960.1|BX676960 BX676960 RN Pinus pinaster cDNA clone RN14H06, mRNA sequence
Length = 468
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 188 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 367
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 368 EPHIMLFRRPLNY 406
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 408 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 229
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 228 VSSVYFSEY*I* 193
>gb|BX677344.1|BX677344 BX677344 RN Pinus pinaster cDNA clone RN21B5, mRNA sequence
Length = 479
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 190 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 369
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 370 EPHIMLFRRPLNY 408
Score = 124 bits (265), Expect = 8e-028
Identities = 55/72 (76%), Positives = 59/72 (81%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MMCGSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 410 W*FKGLLNNMMCGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 231
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 230 VSSVYFSEY*I* 195
>gb|CO166823.1|CO166823 FLD1_64_F08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_F08_A029 5', mRNA sequence
Length = 796
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 209 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 388
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 389 EPHIMLFRRPLNY 427
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 429 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 250
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 249 VSSVYFSEY*I* 214
>gb|DR116715.1|DR116715 RTMG1_2_G11.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_G11_A029 3', mRNA sequence
Length = 784
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 229 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 408
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 409 EPHIMLFRRPLNY 447
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 449 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 270
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 269 VSSVYFSEY*I* 234
>gb|DR116799.1|DR116799 RTMG1_2_G11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_G11_A029 5', mRNA sequence
Length = 774
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 201 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 380
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 381 EPHIMLFRRPLNY 419
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 421 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 242
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 241 VSSVYFSEY*I* 206
>gb|DR385534.1|DR385534 RTHG1_9_F03.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_9_F03_A029 3', mRNA sequence
Length = 803
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 219 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 398
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 399 EPHIMLFRRPLNY 437
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 439 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 260
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 259 VSSVYFSEY*I* 224
>gb|DR386084.1|DR386084 RTHG1_12_G09.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G09_A029 5', mRNA sequence
Length = 811
Score = 175 bits (376), Expect = 4e-043
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHVVLPPE AKLLPKNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 215 MPQIQYSEKYTDDTYEYRHVVLPPETAKLLPKNRLLNENEWRAIGVQQSRGWVHYAIHRP 394
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 395 EPHIMLFRRPLNY 433
Score = 119 bits (254), Expect = 3e-026
Identities = 54/72 (75%), Positives = 58/72 (80%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFLG +LA SGGRTTCLYS*
Sbjct: 435 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLGSNLAVSGGRTTCLYS* 256
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 255 VSSVYFSEY*I* 220
>gb|BQ106803.1|BQ106803 NXLV089_E08_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV089_E08 5' similar to Arabidopsis thaliana
sequence At2g27960 putative cyclin-dependent kinase
regulatory subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 170 bits (366), Expect = 1e-041
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY+DDTYEYRHVVLPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIHRP
Sbjct: 95 MPQIQYSEKYYDDTYEYRHVVLPPDVARLLPKNRLLNENEWRGIGVQQSRGWVHYAIHRP 274
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRR +NY
Sbjct: 275 EPHIMLFRRHLNY 313
Score = 133 bits (286), Expect = 1e-030
Identities = 57/71 (80%), Positives = 58/71 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* NS+MCGSGRWIA*CTHPR CCTPI RHSFS RRFLGRS ATSGG TTCLYS*
Sbjct: 315 W*FKCLLNSIMCGSGRWIA*CTHPRDCCTPIPRHSFSFNRRFLGRSRATSGGSTTCLYS* 136
Query: 138 VSSKYFSEYWI 106
VSS YFSEY I
Sbjct: 135 VSS*YFSEYCI 103
>gb|DR059626.1|DR059626 RTNIT1_18_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_18_F11_A029 5', mRNA sequence
Length = 780
Score = 170 bits (366), Expect = 1e-041
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY+DDTYEYRHVVLPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIHRP
Sbjct: 103 MPQIQYSEKYYDDTYEYRHVVLPPDVARLLPKNRLLNENEWRGIGVQQSRGWVHYAIHRP 282
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRR +NY
Sbjct: 283 EPHIMLFRRHLNY 321
Score = 133 bits (286), Expect = 1e-030
Identities = 57/71 (80%), Positives = 58/71 (81%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* NS+MCGSGRWIA*CTHPR CCTPI RHSFS RRFLGRS ATSGG TTCLYS*
Sbjct: 323 W*FKCLLNSIMCGSGRWIA*CTHPRDCCTPIPRHSFSFNRRFLGRSRATSGGSTTCLYS* 144
Query: 138 VSSKYFSEYWI 106
VSS YFSEY I
Sbjct: 143 VSS*YFSEYCI 111
>gb|AW981906.1|AW981906 PC20B06 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC20B06, mRNA sequence
Length = 506
Score = 167 bits (360), Expect = 7e-041
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DD YEYRHV LPPE+A+LLPK+RLLSENEWR IGVQQSRGWVHYAIHRP
Sbjct: 212 MPQIEYSEKYYDDIYEYRHVELPPEIARLLPKDRLLSENEWRGIGVQQSRGWVHYAIHRP 391
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 392 EPHIMLFRRPLNY 430
Score = 113 bits (242), Expect = 1e-024
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N++MCGSGR +A*CTHPR C TPI RHSFS RRR LGR A SGG +TCLYS*
Sbjct: 432 W*FKGLLNNIMCGSGR*MA*CTHPRDC*TPIPRHSFSLRRRSLGRRRAISGGSSTCLYS* 253
Query: 138 VSSKYFSEYWI* 103
+SS YFSEY I*
Sbjct: 252 ISS*YFSEYSI* 217
>gb|BX252047.1|BX252047 BX252047 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP058H12, mRNA sequence
Length = 535
Score = 167 bits (360), Expect = 7e-041
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DD YEYRHV LPPE+A+LLPK+RLLSENEWR IGVQQSRGWVHYAIHRP
Sbjct: 105 MPQIEYSEKYYDDIYEYRHVELPPEIARLLPKDRLLSENEWRGIGVQQSRGWVHYAIHRP 284
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 285 EPHIMLFRRPLNY 323
Score = 113 bits (242), Expect = 1e-024
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N++MCGSGR +A*CTHPR C TPI RHSFS RRR LGR A SGG +TCLYS*
Sbjct: 325 W*FKGLLNNIMCGSGR*MA*CTHPRDC*TPIPRHSFSLRRRSLGRRRAISGGSSTCLYS* 146
Query: 138 VSSKYFSEYWI* 103
+SS YFSEY I*
Sbjct: 145 ISS*YFSEYSI* 110
>gb|CF476178.1|CF476178 RTWW2_21_H05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_21_H05_A021 5', mRNA sequence
Length = 732
Score = 167 bits (360), Expect = 7e-041
Identities = 63/73 (86%), Positives = 69/73 (94%)
Frame = +2 / +3
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DD YEYRHV LPPE+A+LLPK+RLLSENEWR IGVQQSRGWVHYAIHRP
Sbjct: 162 MPQIEYSEKYYDDIYEYRHVELPPEIARLLPKDRLLSENEWRGIGVQQSRGWVHYAIHRP 341
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 342 EPHIMLFRRPLNY 380
Score = 113 bits (242), Expect = 1e-024
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N++MCGSGR +A*CTHPR C TPI RHSFS RRR LGR A SGG +TCLYS*
Sbjct: 382 W*FKGLLNNIMCGSGR*MA*CTHPRDC*TPIPRHSFSLRRRSLGRRRAISGGSSTCLYS* 203
Query: 138 VSSKYFSEYWI* 103
+SS YFSEY I*
Sbjct: 202 ISS*YFSEYSI* 167
>gb|BE607214.1|BE607214 NXCI_034_B09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_034_B09 5' similar to Arabidopsis
thaliana sequence At2g27960 putative cyclin-dependent
kinase regulatory subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 460
Score = 164 bits (352), Expect = 8e-040
Identities = 64/73 (87%), Positives = 66/73 (90%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QIQYSEKY DDTYEYRHV LPPE KLL KNRLL+ENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 224 MPQIQYSEKYTDDTYEYRHVXLPPETXKLLXKNRLLNENEWRAIGVQQSRGWVHYAIHRP 403
Query: 278 EPHIMLFRRPINY 316
EPHIMLFR P+NY
Sbjct: 404 EPHIMLFRXPLNY 442
Score = 109 bits (233), Expect = 2e-023
Identities = 50/72 (69%), Positives = 54/72 (75%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W* G N+MM GSGR +A*CTHPR C TP+ARHSFS R RFL + SGGR TCLYS*
Sbjct: 444 W*FKGLLNNMMWGSGR*MA*CTHPRDC*TPMARHSFSLRSRFLXSNXXVSGGRXTCLYS* 265
Query: 138 VSSKYFSEYWI* 103
VSS YFSEY I*
Sbjct: 264 VSSVYFSEY*I* 229
>gb|CF473743.1|CF473743 RTWW2_4_D07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_4_D07_A021 5', mRNA sequence
Length = 671
Score = 163 bits (351), Expect = 1e-039
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DDTYEYRHV LPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIH
Sbjct: 53 MDQIEYSEKYYDDTYEYRHVELPPDVARLLPKNRLLTENEWRGIGVQQSRGWVHYAIHCS 232
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 233 EPHIMLFRRPLNY 271
Score = 112 bits (239), Expect = 3e-024
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = -3 / -3
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G N++MCGS + IA*CTHPR C TPI RHSFS RRRFLG S ATSGG +TCLYS*VSS
Sbjct: 261 GLLNNIMCGSEQ*IA*CTHPRDC*TPIPRHSFSVRRRFLGSSRATSGGSSTCLYS*VSS* 82
Query: 126 YFSEYWI* 103
YFSEY I*
Sbjct: 81 YFSEYSI* 58
>gb|DR090117.1|DR090117 RTAL1_12_G02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_G02_A029 5', mRNA sequence
Length = 580
Score = 163 bits (351), Expect = 1e-039
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DDTYEYRHV LPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIH
Sbjct: 122 MDQIEYSEKYYDDTYEYRHVELPPDVARLLPKNRLLTENEWRGIGVQQSRGWVHYAIHCS 301
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 302 EPHIMLFRRPLNY 340
Score = 112 bits (239), Expect = 3e-024
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = -3 / -2
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G N++MCGS + IA*CTHPR C TPI RHSFS RRRFLG S ATSGG +TCLYS*VSS
Sbjct: 330 GLLNNIMCGSEQ*IA*CTHPRDC*TPIPRHSFSVRRRFLGSSRATSGGSSTCLYS*VSS* 151
Query: 126 YFSEYWI* 103
YFSEY I*
Sbjct: 150 YFSEYSI* 127
>gb|DR682873.1|DR682873 EST1072948 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAC79, mRNA sequence
Length = 793
Score = 163 bits (351), Expect = 1e-039
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / -2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DDTYEYRHV LPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIH
Sbjct: 729 MDQIEYSEKYYDDTYEYRHVELPPDVARLLPKNRLLTENEWRGIGVQQSRGWVHYAIHCS 550
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 549 EPHIMLFRRPLNY 511
Score = 112 bits (239), Expect = 3e-024
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = -3 / +2
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G N++MCGS + IA*CTHPR C TPI RHSFS RRRFLG S ATSGG +TCLYS*VSS
Sbjct: 521 GLLNNIMCGSEQ*IA*CTHPRDC*TPIPRHSFSVRRRFLGSSRATSGGSSTCLYS*VSS* 700
Query: 126 YFSEYWI* 103
YFSEY I*
Sbjct: 701 YFSEYSI* 724
>gb|DT631108.1|DT631108 EST1146039 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF507 3' end, mRNA sequence
Length = 712
Score = 163 bits (351), Expect = 1e-039
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DDTYEYRHV LPP+VA+LLPKNRLL+ENEWR IGVQQSRGWVHYAIH
Sbjct: 83 MDQIEYSEKYYDDTYEYRHVELPPDVARLLPKNRLLTENEWRGIGVQQSRGWVHYAIHCS 262
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+NY
Sbjct: 263 EPHIMLFRRPLNY 301
Score = 112 bits (239), Expect = 3e-024
Identities = 51/68 (75%), Positives = 55/68 (80%)
Frame = -3 / -2
Query: 306 GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSK 127
G N++MCGS + IA*CTHPR C TPI RHSFS RRRFLG S ATSGG +TCLYS*VSS
Sbjct: 291 GLLNNIMCGSEQ*IA*CTHPRDC*TPIPRHSFSVRRRFLGSSRATSGGSSTCLYS*VSS* 112
Query: 126 YFSEYWI* 103
YFSEY I*
Sbjct: 111 YFSEYSI* 88
>gb|CR393912.1|CR393912 CR393912 RN Pinus pinaster cDNA clone RN67C08, mRNA sequence
Length = 436
Score = 136 bits (292), Expect(2) = 9e-036
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +2 / +2
Query: 146 YRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPINY 316
YRHV LPPE+A+LLPK+RLLSENEWR IGVQQSRGWVHYAIHRPEPHIMLFRRP+NY
Sbjct: 68 YRHVELPPEIARLLPKDRLLSENEWRGIGVQQSRGWVHYAIHRPEPHIMLFRRPLNY 238
Score = 34.1 bits (68), Expect(2) = 9e-036
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYE 145
M QI+YSEKY+DD YE
Sbjct: 19 MPQIEYSEKYYDDIYE 66
>gb|AW587623.1|AW587623 ST60F05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST60F05, mRNA sequence
Length = 423
Score = 141 bits (303), Expect = 5e-033
Identities = 54/65 (83%), Positives = 59/65 (90%)
Frame = +2 / +2
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
M QI+YSEKY+DD YEYRHV LPPE+A+LLPK+RLLSENEWR IGVQQSRGWVHYAI P
Sbjct: 212 MPQIEYSEKYYDDIYEYRHVELPPEIARLLPKDRLLSENEWRGIGVQQSRGWVHYAIXXP 391
Query: 278 EPHIM 292
EPHIM
Sbjct: 392 EPHIM 406
Score = 103 bits (220), Expect = 1e-021
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -3 / -1
Query: 291 MMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*VSSKYFSEY 112
+MCGSG +A*CTHPR C TPI RHSFS RRR LGR A SGG +TCLYS*+SS YFSEY
Sbjct: 405 IMCGSGXXMA*CTHPRDC*TPIPRHSFSLRRRSLGRRRAISGGSSTCLYS*ISS*YFSEY 226
Query: 111 WI* 103
I*
Sbjct: 225 SI* 217
>gb|BM493350.1|BM493350 NXLV_061_H01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_061_H01 5' similar to Arabidopsis thaliana
sequence At2g27960 putative cyclin-dependent kinase
regulatory subunit see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 234
Score = 111 bits (237), Expect = 6e-024
Identities = 45/64 (70%), Positives = 51/64 (79%)
Frame = +2 / +3
Query: 80 REALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVH 259
REA + G + DDTYEYRHV LPP+VA+LLPKNRLL+ENEWR IGV+QSRGWVH
Sbjct: 3 REARIVFGTGNSAIMAGDDTYEYRHVELPPDVARLLPKNRLLTENEWRGIGVRQSRGWVH 182
Query: 260 YAIH 271
YAIH
Sbjct: 183 YAIH 194
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 374,300,218
Number of Sequences: 355925
Number of extensions: 5188329
Number of successful extensions: 39998
Number of sequences better than 1.0e-020: 37
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11160952515
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)