TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2188214.2.1
(880 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pin... 86 1e-033
gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added... 86 1e-033
gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pin... 86 1e-033
gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pin... 86 1e-033
gb|CX649258.1|CX649258 COLD1_34_C03.b1_A029 Root cold Pinus... 86 1e-033
gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch... 86 1e-033
gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus... 86 1e-033
gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added... 86 1e-033
gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch... 86 1e-033
gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo li... 86 2e-033
gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus... 86 1e-031
gb|CF665812.1|CF665812 RTCNT1_18_D09.g1_A029 Root control P... 79 2e-031
gb|DR052202.1|DR052202 RTCA1_3_C04.b1_A029 Roots minus calc... 81 7e-030
gb|CO366452.1|CO366452 RTK1_28_A03.b1_A029 Roots minus pota... 81 7e-030
gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magn... 81 7e-030
gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pin... 81 7e-030
gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus add... 81 7e-030
gb|CO158997.1|CO158997 FLD1_10_D08.g1_A029 Root flooded Pin... 81 7e-030
gb|DR090921.1|DR090921 RTAL1_18_F03.b1_A029 Roots plus adde... 81 7e-030
gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control P... 81 7e-030
gb|DR091970.1|DR091970 RTAL1_25_E06.b1_A029 Roots plus adde... 81 7e-030
gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism... 81 7e-030
gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus... 81 7e-030
gb|CO166717.1|CO166717 FLD1_64_B05.b1_A029 Root flooded Pin... 81 7e-030
gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropis... 81 7e-030
gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus adde... 81 7e-030
gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control P... 81 7e-030
gb|CO170800.1|CO170800 NDL1_17_B03.b1_A029 Needles control ... 81 7e-030
gb|CF397782.1|CF397782 RTDS3_1_G02.g1_A022 Drought-stressed... 81 7e-030
gb|BX682737.1|BX682737 BX682737 Pinus pinaster differenciat... 81 7e-030
gb|DR117607.1|DR117607 RTMG1_8_A08.b1_A029 Roots minus magn... 80 1e-029
gb|DR742254.1|DR742254 RTCU1_2_G05.g1_A029 Roots plus added... 80 1e-029
gb|CF672967.1|CF672967 RTCNT1_75_D10.b1_A029 Root control P... 80 1e-029
gb|DR167996.1|DR167996 RTPHOS1_22_B11.g1_A029 Roots minus p... 80 1e-029
gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pin... 72 2e-027
gb|CO167325.1|CO167325 FLD1_68_F03.b1_A029 Root flooded Pin... 72 2e-027
gb|DR118429.1|DR118429 RTMG1_17_A03.b1_A029 Roots minus mag... 72 2e-027
gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compr... 82 2e-027
gb|DR166446.1|DR166446 RTPHOS1_12_B09.b2_A029 Roots minus p... 72 5e-027
gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo li... 72 7e-027
gb|DR049627.1|DR049627 RTBOR1_18_A12.b1_A029 Roots plus add... 72 7e-027
gb|DR165420.1|DR165420 RTPHOS1_5_A09.b1_A029 Roots minus ph... 72 2e-026
gb|CO166055.1|CO166055 FLD1_59_B03.b1_A029 Root flooded Pin... 70 7e-026
gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2... 76 7e-026
gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus ph... 72 4e-025
gb|BE049757.1|BE049757 NXNV_143_F04_F Nsf Xylem Normal wood... 70 1e-024
gb|DR388029.1|DR388029 RTHG1_25_F01.g1_A029 Roots plus adde... 76 2e-024
gb|CO167405.1|CO167405 FLD1_68_F03.g1_A029 Root flooded Pin... 72 1e-023
gb|CO364339.1|CO364339 RTK1_15_D12.b1_A029 Roots minus pota... 70 1e-022
gb|CF668794.1|CF668794 RTCNT1_38_E07.g1_A029 Root control P... 70 1e-022
gb|CF393874.1|CF393874 RTDS2_1_F10.g1_A021 Drought-stressed... 70 1e-022
gb|CF663255.1|CF663255 RTCNT1_1_F05.g1_A029 Root control Pi... 70 1e-022
gb|DR118504.1|DR118504 RTMG1_17_A03.g1_A029 Roots minus mag... 72 2e-022
gb|DR102200.1|DR102200 STRR1_79_G05.b1_A033 Stem Response R... 72 2e-022
gb|CO164159.1|CO164159 FLD1_46_E06.b1_A029 Root flooded Pin... 86 4e-021
gb|CO164009.1|CO164009 FLD1_45_E07.b1_A029 Root flooded Pin... 86 4e-021
>gb|CO164083.1|CO164083 FLD1_45_E07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_E07_A029 5', mRNA sequence
Length = 886
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 713 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 555
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / -3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 563 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 420
>gb|DR089072.1|DR089072 RTAL1_6_H06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 3', mRNA sequence
Length = 844
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 202 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 360
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 352 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 495
>gb|CO162866.1|CO162866 FLD1_38_A12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_A12_A029 3', mRNA sequence
Length = 843
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 173 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 331
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 323 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 466
>gb|CO164233.1|CO164233 FLD1_46_E06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_46_E06_A029 5', mRNA sequence
Length = 843
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / -1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 711 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 553
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / -1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 561 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 418
>gb|CX649258.1|CX649258 COLD1_34_C03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 3', mRNA sequence
Length = 783
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 11 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 169
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 161 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 304
>gb|DR024599.1|DR024599 STRS1_66_C04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 3', mRNA sequence
Length = 762
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 93 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 251
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 243 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 386
>gb|CX649763.1|CX649763 COLD1_41_H01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_H01_A029 3', mRNA sequence
Length = 753
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 518 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 360
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 368 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 225
>gb|DR089158.1|DR089158 RTAL1_6_H06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_H06_A029 5', mRNA sequence
Length = 749
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 371 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 529
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 521 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 664
>gb|DR024659.1|DR024659 STRS1_66_C04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_66_C04_A034 5', mRNA sequence
Length = 643
Score = 85.8 bits (181), Expect(2) = 1e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 249 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 407
Score = 78.0 bits (164), Expect(2) = 1e-033
Identities = 27/48 (56%), Positives = 37/48 (77%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 399 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 542
>gb|DT636926.1|DT636926 EST1151857 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX65 3' end, mRNA sequence
Length = 844
Score = 85.8 bits (181), Expect(2) = 2e-033
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 438 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 596
Score = 77.1 bits (162), Expect(2) = 2e-033
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + + +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 588 EVALTPMPQAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 731
>gb|CX649335.1|CX649335 COLD1_34_C03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_34_C03_A029 5', mRNA sequence
Length = 699
Score = 85.8 bits (181), Expect(2) = 1e-031
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 415 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 573
Score = 71.2 bits (149), Expect(2) = 1e-031
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYN 593
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYN
Sbjct: 565 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYN 699
>gb|CF665812.1|CF665812 RTCNT1_18_D09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D09_A029 5', mRNA sequence
Length = 552
Score = 79.4 bits (167), Expect(2) = 2e-031
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -1 / -3
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH+ C K QFACP+CSKSVCDMSK WE+LD E+A
Sbjct: 547 PCGHTIHMHC*KEMHEHLQFACPVCSKSVCDMSKLWEKLDREVA 416
Score = 77.1 bits (162), Expect(2) = 2e-031
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = -1 / -3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + + +KMV ILCNDCG S+V FH++AHKCQ+C SYNTRQ
Sbjct: 424 EVALTPMPQAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQ 281
>gb|DR052202.1|DR052202 RTCA1_3_C04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C04_A029 3', mRNA sequence
Length = 868
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 172 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 330
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 322 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 465
>gb|CO366452.1|CO366452 RTK1_28_A03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_A03_A029 3', mRNA sequence
Length = 865
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 86 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 244
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 236 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 379
>gb|DR117514.1|DR117514 RTMG1_7_A07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_A07_A029 5', mRNA sequence
Length = 860
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 200 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 358
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 350 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 493
>gb|CO166121.1|CO166121 FLD1_59_B03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_B03_A029 5', mRNA sequence
Length = 835
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 316 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 474
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 466 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 609
>gb|DR050795.1|DR050795 RTBOR1_25_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_E10_A029 5', mRNA sequence
Length = 833
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 236 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 394
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 386 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 529
>gb|CO158997.1|CO158997 FLD1_10_D08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_D08_A029 5', mRNA sequence
Length = 794
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 27 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 185
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 177 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 320
>gb|DR090921.1|DR090921 RTAL1_18_F03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_18_F03_A029 3', mRNA sequence
Length = 795
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 2 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 160
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 152 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 295
>gb|CF672296.1|CF672296 RTCNT1_62_D06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_D06_A029 5', mRNA sequence
Length = 765
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 172 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 330
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 322 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 465
>gb|DR091970.1|DR091970 RTAL1_25_E06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_25_E06_A029 3', mRNA sequence
Length = 756
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 19 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 177
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 169 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 312
>gb|CO197792.1|CO197792 GEO1_9_D08.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_9_D08_A029 3', mRNA sequence
Length = 747
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 611 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 453
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 461 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 318
>gb|CX652526.1|CX652526 COLD1_59_E01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_E01_A029 5', mRNA sequence
Length = 741
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 158 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 316
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 308 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 451
>gb|CO166717.1|CO166717 FLD1_64_B05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_B05_A029 3', mRNA sequence
Length = 737
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 678 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 520
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 528 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 385
>gb|CO197932.1|CO197932 GEO1_10_D09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_10_D09_A029 3', mRNA sequence
Length = 733
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 519 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 361
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 369 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 226
>gb|DR745125.1|DR745125 RTCU1_27_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_E06_A029 3', mRNA sequence
Length = 707
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 547 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 389
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 397 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 254
>gb|CF671877.1|CF671877 RTCNT1_59_H03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_59_H03_A029 5', mRNA sequence
Length = 696
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 125 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 283
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 275 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 418
>gb|CO170800.1|CO170800 NDL1_17_B03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_B03_A029 3', mRNA sequence
Length = 661
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 528 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 370
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 378 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 235
>gb|CF397782.1|CF397782 RTDS3_1_G02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_1_G02_A022 5', mRNA sequence
Length = 581
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 57 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 215
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 207 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 350
>gb|BX682737.1|BX682737 BX682737 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121A02, mRNA sequence
Length = 504
Score = 80.8 bits (170), Expect(2) = 7e-030
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 86 ESTRDINVLPCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 244
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 236 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 379
>gb|DR117607.1|DR117607 RTMG1_8_A08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_A08_A029 3', mRNA sequence
Length = 873
Score = 80.3 bits (169), Expect(2) = 1e-029
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -1 / -2
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 854 PCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 723
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / -2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 731 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 588
>gb|DR742254.1|DR742254 RTCU1_2_G05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_2_G05_A029 5', mRNA sequence
Length = 756
Score = 80.3 bits (169), Expect(2) = 1e-029
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -1 / +1
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 19 PCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 150
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 142 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 285
>gb|CF672967.1|CF672967 RTCNT1_75_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_75_D10_A029 3', mRNA sequence
Length = 709
Score = 80.3 bits (169), Expect(2) = 1e-029
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -1 / +3
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 18 PCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 149
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 141 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 284
>gb|DR167996.1|DR167996 RTPHOS1_22_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_B11_A029 5', mRNA sequence
Length = 570
Score = 80.3 bits (169), Expect(2) = 1e-029
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = -1 / +1
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 31 PCGHTIHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 162
Score = 70.3 bits (147), Expect(2) = 1e-029
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 154 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 297
>gb|CO161310.1|CO161310 FLD1_28_B01.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_28_B01_A029 3', mRNA sequence
Length = 916
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NCKSYNTRQ
Sbjct: 324 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTRQ 217
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 510 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 331
Query: 691 HK 686
++
Sbjct: 330 YQ 325
>gb|CO167325.1|CO167325 FLD1_68_F03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_F03_A029 3', mRNA sequence
Length = 854
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -1 / +1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NCKSYNTRQ
Sbjct: 358 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTRQ 465
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 172 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 351
Query: 691 HK 686
++
Sbjct: 352 YQ 357
>gb|DR118429.1|DR118429 RTMG1_17_A03.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_A03_A029 3', mRNA sequence
Length = 786
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -1 / +2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NCKSYNTRQ
Sbjct: 290 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTRQ 397
Score = 71.6 bits (150), Expect(2) = 2e-027
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 104 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 283
Query: 691 HK 686
++
Sbjct: 284 YQ 289
>gb|BE496399.1|BE496399 NXCI_017_D12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D12 5' similar to Arabidopsis
thaliana sequence At5g22920 PGPD14 protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 82.2 bits (173), Expect(2) = 2e-027
Identities = 30/53 (56%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + PC HTIH+ CLK QFACP+CSKSVCDMSK WE+LD A
Sbjct: 295 DSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDRXXA 453
Score = 61.1 bits (127), Expect(2) = 2e-027
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = -1 / +1
Query: 718 LATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKS 599
L + ++ KMV ILCNDCG S+V FH+ AHKCQ+C S
Sbjct: 454 LTPMPEAYXXKMVWILCNDCGVTSEVNFHIXAHKCQSCNS 573
>gb|DR166446.1|DR166446 RTPHOS1_12_B09.b2_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_12_B09_A029 3', mRNA sequence
Length = 618
Score = 71.6 bits (150), Expect(2) = 5e-027
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -1 / +3
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NCKSYNTRQ
Sbjct: 171 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKSYNTRQ 278
Score = 69.8 bits (146), Expect(2) = 5e-027
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -1 / +3
Query: 841 CXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHK 686
C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D++
Sbjct: 15 CGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYDYQ 170
>gb|DR690385.1|DR690385 EST1080471 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACU46 3' end, mRNA sequence
Length = 912
Score = 71.6 bits (150), Expect(2) = 7e-027
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 619 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 798
Query: 691 HK 686
++
Sbjct: 799 YQ 804
Score = 69.3 bits (145), Expect(2) = 7e-027
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -1 / +1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NC SYNTRQ
Sbjct: 805 NKMVWILCNDCDMFSEVQFHIVAQKCLNCNSYNTRQ 912
>gb|DR049627.1|DR049627 RTBOR1_18_A12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_A12_A029 3', mRNA sequence
Length = 778
Score = 71.6 bits (150), Expect(2) = 7e-027
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 53 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 232
Query: 691 HK 686
++
Sbjct: 233 YQ 238
Score = 69.3 bits (145), Expect(2) = 7e-027
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -1 / +2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC NC SYNTRQ
Sbjct: 239 NKMVWILCNDCDMFSEVQFHIVAQKCLNCNSYNTRQ 346
>gb|DR165420.1|DR165420 RTPHOS1_5_A09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_5_A09_A029 3', mRNA sequence
Length = 859
Score = 71.6 bits (150), Expect(2) = 2e-026
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 265 DSLKAISVLRCGHTMHGECLTEMKEHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 444
Query: 691 HK 686
++
Sbjct: 445 YQ 450
Score = 68.0 bits (142), Expect(2) = 2e-026
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -1 / +1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+KMV ILCNDC S+VQFH++A KC CKSYNTRQ
Sbjct: 451 NKMVWILCNDCDMFSEVQFHIVAQKCLYCKSYNTRQ 558
>gb|CO166055.1|CO166055 FLD1_59_B03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_B03_A029 3', mRNA sequence
Length = 795
Score = 70.3 bits (147), Expect(2) = 7e-026
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 110 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 253
Score = 67.5 bits (141), Expect(2) = 7e-026
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = -1 / +2
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
IH+ CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 2 IHMDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 118
>gb|CO361729.1|CO361729 NDL2_6_E02.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_E02_A029 5', mRNA sequence
Length = 777
Score = 75.8 bits (159), Expect(2) = 7e-026
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+ L + CD
Sbjct: 530 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEVWILCNDCD 709
Score = 62.0 bits (129), Expect(2) = 7e-026
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -1 / +2
Query: 682 VRILCNDCGAISDVQFHLIAHKCQNCKSYNT 590
V ILCNDC S+VQFH++A KC NCKSYNT
Sbjct: 683 VWILCNDCDMFSEVQFHIVAQKCLNCKSYNT 775
>gb|DR165496.1|DR165496 RTPHOS1_5_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_5_A09_A029 5', mRNA sequence
Length = 830
Score = 71.6 bits (150), Expect(2) = 4e-025
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 541 DSLKAISVLRCGHTMHGECLTEMKEHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 720
Query: 691 HK 686
++
Sbjct: 721 YQ 726
Score = 63.4 bits (132), Expect(2) = 4e-025
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = -1 / +1
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNT 590
+KMV ILCNDC S+VQFH++A KC CKSYNT
Sbjct: 727 NKMVWILCNDCDMFSEVQFHIVAQKCLYCKSYNT 828
>gb|BE049757.1|BE049757 NXNV_143_F04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_143_F04 5' similar to Arabidopsis thaliana
sequence At5g25560 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 70.3 bits (147), Expect(2) = 1e-024
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 130 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 273
Score = 63.4 bits (132), Expect(2) = 1e-024
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = -1 / +1
Query: 823 VKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
V CLK QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 28 VDCLKEMQQHLQFFCPVCSKSVCDMSKVWEKLDEEVA 138
>gb|DR388029.1|DR388029 RTHG1_25_F01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F01_A029 5', mRNA sequence
Length = 783
Score = 75.8 bits (159), Expect(2) = 2e-024
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTR 587
++ L + ++ +KMV ILCNDCG S+V FH++AHKCQ+C SYNTR
Sbjct: 642 EVALTPMPEAYQNKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTR 782
Score = 57.0 bits (118), Expect(2) = 2e-024
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1 / +3
Query: 787 FACPLCSKSVCDMSKAWERLDMELA 713
FACP+CSKSVCDMSK WE+LD E+A
Sbjct: 576 FACPVCSKSVCDMSKLWEKLDREVA 650
>gb|CO167405.1|CO167405 FLD1_68_F03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_F03_A029 5', mRNA sequence
Length = 873
Score = 71.6 bits (150), Expect(2) = 1e-023
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
D + C HT+H +CL Q++CP+CSKSVCDMS WE+LD E+A D
Sbjct: 593 DSLKAISVLRCGHTMHGECLTEMKKHSQYSCPMCSKSVCDMSIIWEQLDQEIAATPMPYD 772
Query: 691 HK 686
++
Sbjct: 773 YQ 778
Score = 58.8 bits (122), Expect(2) = 1e-023
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -1 / +2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKS 599
+KMV ILCNDC S+VQFH++A KC NCKS
Sbjct: 779 NKMVWILCNDCDMFSEVQFHIVAQKCLNCKS 871
>gb|CO364339.1|CO364339 RTK1_15_D12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D12_A029 3', mRNA sequence
Length = 800
Score = 70.3 bits (147), Expect(2) = 1e-022
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 87 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 230
Score = 56.5 bits (117), Expect(2) = 1e-022
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -1 / +3
Query: 790 QFACPLCSKSVCDMSKAWERLDMELA 713
QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 18 QFFCPVCSKSVCDMSKVWEKLDEEVA 95
>gb|CF668794.1|CF668794 RTCNT1_38_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_E07_A029 5', mRNA sequence
Length = 790
Score = 70.3 bits (147), Expect(2) = 1e-022
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = -1 / +1
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
++ L + +S +K + ILCNDC A S+V FH++A KC NC SYNTRQ
Sbjct: 82 EVALTPMPESYQNKKIWILCNDCNATSEVPFHIVAQKCLNCNSYNTRQ 225
Score = 56.5 bits (117), Expect(2) = 1e-022
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -1 / +1
Query: 790 QFACPLCSKSVCDMSKAWERLDMELA 713
QF CP+CSKSVCDMSK WE+LD E+A
Sbjct: 13 QFFCPVCSKSVCDMSKVWEKLDEEVA 90
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 476,846,049
Number of Sequences: 355925
Number of extensions: 7669454
Number of successful extensions: 52935
Number of sequences better than 1.0e-020: 64
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 12940234800
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)