TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA... 151 7e-035
dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA... 151 7e-035
dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA... 144 6e-033
ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA 144 6e-033
ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-... 144 6e-033
dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA... 142 3e-032
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 79 5e-030
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 79 5e-030
gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) c... 79 6e-030
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 78 1e-028
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 78 1e-028
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 78 1e-028
gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) c... 78 1e-028
gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (ja... 127 5e-028
>dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H12, full
insert sequence
Length = 1173
Score = 151 bits (324), Expect = 7e-035
Identities = 56/59 (94%), Positives = 58/59 (98%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH+GY FPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW
Sbjct: 671 LWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 847
>dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full
insert sequence
Length = 1223
Score = 151 bits (324), Expect = 7e-035
Identities = 56/59 (94%), Positives = 58/59 (98%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH+GY FPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW
Sbjct: 627 LWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 803
>dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F03, full
insert sequence
Length = 1146
Score = 144 bits (310), Expect = 6e-033
Identities = 51/59 (86%), Positives = 58/59 (98%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 621 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDW 797
>ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1146
Score = 144 bits (310), Expect = 6e-033
Identities = 51/59 (86%), Positives = 58/59 (98%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 621 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDW 797
>ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.22 mRNA
Length = 1337
Score = 144 bits (310), Expect = 6e-033
Identities = 51/59 (86%), Positives = 58/59 (98%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 620 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDW 796
>dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full
insert sequence
Length = 1337
Score = 142 bits (305), Expect = 3e-032
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG++FHDYHHRVLYTK GNY+STF+YMDW
Sbjct: 620 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKPGNYSSTFIYMDW 796
>gb|CH401271.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000108
genomic scaffold, whole genome shotgun sequence
Length = 327658
Score = 79.0 bits (166), Expect(2) = 5e-030
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
LWMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 295561 LWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 295466
Score = 75.8 bits (159), Expect(2) = 5e-030
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3 / -3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
SDFHDYHHRVLYTKSGNYASTFVYMDW*
Sbjct: 295379 SDFHDYHHRVLYTKSGNYASTFVYMDW* 295296
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0026K20 map S10559, complete sequence
Length = 115996
Score = 79.0 bits (166), Expect(2) = 5e-030
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -3 / -3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
LWMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 50576 LWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 50481
Score = 75.8 bits (159), Expect(2) = 5e-030
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3 / -2
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
SDFHDYHHRVLYTKSGNYASTFVYMDW*
Sbjct: 50394 SDFHDYHHRVLYTKSGNYASTFVYMDW* 50311
>gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023822, whole
genome shotgun sequence
Length = 11245
Score = 79.0 bits (166), Expect(2) = 6e-030
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
LWMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 8365 LWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 8270
Score = 75.8 bits (159), Expect(2) = 6e-030
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3 / -3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW* 403
SDFHDYHHRVLYTKSGNYASTFVYMDW*
Sbjct: 8183 SDFHDYHHRVLYTKSGNYASTFVYMDW* 8100
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 88040 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 88135
Score = 72.5 bits (152), Expect(2) = 1e-028
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -3 / +2
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW*GF 397
++FHDYHHRVLYTKSGNY+STF+YMDW* F
Sbjct: 88232 AEFHDYHHRVLYTKSGNYSSTFIYMDW*EF 88321
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 80097 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 80192
Score = 72.5 bits (152), Expect(2) = 1e-028
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -3 / +3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW*GF 397
++FHDYHHRVLYTKSGNY+STF+YMDW* F
Sbjct: 80289 AEFHDYHHRVLYTKSGNYSSTFIYMDW*EF 80378
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 88042 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 88137
Score = 72.5 bits (152), Expect(2) = 1e-028
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -3 / +1
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW*GF 397
++FHDYHHRVLYTKSGNY+STF+YMDW* F
Sbjct: 88234 AEFHDYHHRVLYTKSGNYSSTFIYMDW*EF 88323
>gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014992, whole
genome shotgun sequence
Length = 12136
Score = 77.6 bits (163), Expect(2) = 1e-028
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
+WMVLRVL+TVEAH+GY FPWSPSNFLPLYGG
Sbjct: 10398 VWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 10493
Score = 72.5 bits (152), Expect(2) = 1e-028
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = -3 / +3
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW*GF 397
++FHDYHHRVLYTKSGNY+STF+YMDW* F
Sbjct: 10590 AEFHDYHHRVLYTKSGNYSSTFIYMDW*EF 10679
>gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61906_1A, mRNA sequence
Length = 390
Score = 127 bits (272), Expect(2) = 5e-028
Identities = 44/51 (86%), Positives = 50/51 (98%)
Frame = -3 / +2
Query: 558 KTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
+TVEAH+GY FPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 2 ETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDW 154
Score = 20.3 bits (38), Expect(2) = 5e-028
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3 / +3
Query: 336 SGCSGRTMVIARQR 295
+GC G + ARQR
Sbjct: 150 TGCLGLXKITARQR 191
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,776,565,308
Number of Sequences: 438736
Number of extensions: 55855759
Number of successful extensions: 263213
Number of sequences better than 1.0e-020: 17
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 123491619912
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)