TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKIN... 134 1e-030
gb|AY557602.1| Medicago truncatula cultivar Jemalong core a... 131 2e-030
>gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKING DRAFT SEQUENCE, 16
unordered pieces
Length = 124356
Score = 134 bits (287), Expect = 1e-030
Identities = 53/86 (61%), Positives = 67/86 (77%)
Frame = -3 / -2
Query: 452 RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
RS LTL + ++AVL KF SLNHVPVWK ERP ++GGD+LK+Y+IYP GLTQRQALY F
Sbjct: 92330 RSSNLTLESFKTAVLTKFTSLNHVPVWKPERPEILKGGDELKVYKIYPAGLTQRQALYTF 92151
Query: 272 RFRDDSELEQYIKDHPCAKLEVIFV* 195
+F D + +++ +PCAK EVIFV*
Sbjct: 92150 KFNGDVDFRSHLESNPCAKFEVIFV* 92073
>gb|AY557602.1| Medicago truncatula cultivar Jemalong core alpha
1,3-fucosyltransferase (FUT2) gene, complete cds
Length = 3124
Score = 131 bits (281), Expect(2) = 2e-030
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = -3 / +2
Query: 449 SGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGFR 270
S LTL + ++AVL KF SLNHVPVWK ERP ++GGD+LK+Y+IYP GLTQRQALY F+
Sbjct: 2870 SSNLTLESFKTAVLTKFTSLNHVPVWKPERPEILKGGDELKVYKIYPAGLTQRQALYTFK 3049
Query: 269 FRDDSELEQYIKDHPCAKLEVIFV* 195
F D + +++ +PCAK EV+FV*
Sbjct: 3050 FNGDVDFRSHLESNPCAKFEVVFV* 3124
Score = 24.9 bits (48), Expect(2) = 2e-030
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3 / +1
Query: 491 RERGRFKSESIYM 453
RERG F+ ESIY+
Sbjct: 2374 RERGTFEMESIYL 2412
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 501,006,059
Number of Sequences: 392609
Number of extensions: 6557448
Number of successful extensions: 46158
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 14034401994
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)