TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammo... 70 1e-022
>emb|X58180.1|MSPAL M.sativa PAL mRNA for phenylalanine ammonia-lyase
Length = 2409
Score = 70.3 bits (147), Expect(2) = 1e-022
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = +1 / +1
Query: 76 ESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
ESG P +PN+I CRSYPLY+FVREE+GT LTGE SP
Sbjct: 2047 ESGNPTIPNKINGCRSYPLYKFVREELGTGLLTGENVISP 2166
Score = 50.1 bits (103), Expect(2) = 1e-022
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +1 / +1
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDPLLECL EWNGAPLP+C*
Sbjct: 2215 IDPLLECLGEWNGAPLPIC* 2274
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,791,449
Number of Sequences: 7669
Number of extensions: 61576
Number of successful extensions: 930
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 157499900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)