TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621801.2.1
(679 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence 82 3e-028
>gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence
Length = 594
Score = 81.7 bits (172), Expect(2) = 3e-028
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = -3 / -3
Query: 212 FGGYKMSGVGREKGIYALRNYLQTKAVVTPIKNPAWL* 99
FGGYKMSG GREKG Y+L+NYLQ KAVVTP+KNPAWL*
Sbjct: 505 FGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL* 392
Score = 57.9 bits (120), Expect(2) = 3e-028
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = -3 / -1
Query: 302 SLDAANTLSRALRAGTVWVNCYDVFDATIP 213
++D ANTL+RAL+ GTVWVNC+D FDA P
Sbjct: 594 NIDTANTLTRALKVGTVWVNCFDTFDAAXP 505
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,218,220
Number of Sequences: 7669
Number of extensions: 46725
Number of successful extensions: 940
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 169544010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)