TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY804253.1| Medicago sativa acidic glucanase (Glu) mRNA,... 96 5e-025
>gb|AY804253.1| Medicago sativa acidic glucanase (Glu) mRNA, complete cds
Length = 1113
Score = 95.9 bits (203), Expect(2) = 5e-025
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = +2 / +1
Query: 8 YPFISHVNDPANVQLAYALFGAGAAPVQDGALVYTNLFDATVDALVAALEKEGFGGVLFA 187
YP+ SHV +P ++ L YALF + VQDG Y NLFDA +D++ AAL+ G G V
Sbjct: 631 YPYFSHVGNPRDISLPYALFTSPGVMVQDGPNGYQNLFDAMLDSVHAALDNTGIGWVNVV 810
Query: 188 VTETGWPTAGHPAATPQNATAYNAKIVERPARGVGTPKRPKETVEVFLFD 337
V+E+GWP+ G A + NA Y ++ +G ET +FD
Sbjct: 811 VSESGWPSDGGAATSYDNARIYLDNLIRHVGKGTPRRPWATETYIFAMFD 960
Score = 32.2 bits (64), Expect(2) = 5e-025
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2 / +1
Query: 347 EDGKPGPEFERHFGIFRADGSKAYDINF 430
++ + PE E+HFG+F + K Y F
Sbjct: 958 DENQKSPELEKHFGVFYPNKQKKYPFGF 1041
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,428,736
Number of Sequences: 7669
Number of extensions: 32931
Number of successful extensions: 1110
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 140120850
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)