TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441114.2.2
(962 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512234.1|CO512234 s13dSG03E1200087_113982 Glandular tr... 358 e-100
>gb|CO512234.1|CO512234 s13dSG03E1200087_113982 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 358 bits (777), Expect = e-100
Identities = 144/183 (78%), Positives = 161/183 (87%)
Frame = -1 / +1
Query: 863 RNSDSEPSPMAVKVYVVYYSMYGHVGKLAEEIQKGASSVEGVEAKTWQVPETLPEEVLGK 684
R + S MAVK+Y+VYYSMYGHV KLAEEI+KGA+SVEGVEAK WQVPETL EEVLGK
Sbjct: 40 RERPLKTSSMAVKLYIVYYSMYGHVEKLAEEIKKGAASVEGVEAKLWQVPETLQEEVLGK 219
Query: 683 MGAPPKPDVPVITPQELAEADGILFGFPTRFGMMAAQMKAFFDATGGLWREQSLAGKPAG 504
M APPK DVP+ITP EL+E DG +FGFPTRFGMMAAQ KAF DATGGLW+ QSLAGKPAG
Sbjct: 220 MSAPPKSDVPLITPNELSEGDGFVFGFPTRFGMMAAQFKAFLDATGGLWKAQSLAGKPAG 399
Query: 503 VFFCTGSQGGGQETTALTAITQLTHHGMVFVPVGYTFGAKLFGMDQVQGGSPYGAGTFAA 324
+F+ TGSQGGGQETTALTAITQL HHGM+FVP+GYTFGA +F M+QV+GGSPYGAGT+A
Sbjct: 400 IFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEQVKGGSPYGAGTYAG 579
Query: 323 DGS 315
DGS
Sbjct: 580 DGS 588
Score = 248 bits (536), Expect = 8e-067
Identities = 119/176 (67%), Positives = 130/176 (73%)
Frame = +1 / -2
Query: 316 EPSAANVPAP*GLPP*TWSMPNSLAPKV*PTGTNTMPWCVNWVIAVNAVVSWPPPWDPVQ 495
EPS A VPAP GLPP T S+ N AP V*P GTN +P + VIAV+AVVS PPP +PV
Sbjct: 587 EPSPAYVPAPYGLPPFTCSISNMPAPNV*PIGTNIIP**TS*VIAVSAVVSCPPP*EPVL 408
Query: 496 KKTPAGLPARLCSLQSPPVASKNAFICAAIIPNLVGNPKRIPSASASSCGVMTGTSGLGG 675
K PAGLPA C+ PPVAS+ A AAIIPNLVG PK PS S SS GVM+GTS LGG
Sbjct: 407 *KIPAGLPASDCAFHKPPVASRKALN*AAIIPNLVGKPKTKPSPSESSFGVMSGTSLLGG 228
Query: 676 APIFPSTSSGRVSGTCHVLASTPSTDEAPFWISSASLPTCPYME*YTT*TLTAIGE 843
A I PSTSS VSGTCH LASTPST+ APF+ISSAS TCPYME*YT *+LTAI E
Sbjct: 227 ALILPSTSSCSVSGTCHSLASTPSTEAAPFFISSASFSTCPYME*YTM*SLTAIDE 60
Score = 133 bits (285), Expect = 3e-032
Identities = 58/134 (43%), Positives = 80/134 (59%)
Frame = +3 / -1
Query: 435 QLGDRCQRCRLLATTLGSSAEEDAGRLAGKALLPPEPTSGIEERLHLRCHHSEPRWEPEE 614
QL + +RC LL+ L + A ED+GRLA K L P+ TS I + L HHS+ WE ++
Sbjct: 468 QLSNSSKRCSLLSAALRTGAVEDSGRLACK*LCFPQTTSSI*KSFELSSHHSKSCWEAKD 289
Query: 615 DSVGLCEFLRRDDWHVRLRGCAHLSKHFLREGFRDLPCFSFNTFNRRGTFLDLFS*FANM 794
++ L EF+ D+W++ L C H +KH L + R LP F N +R T L F *F +M
Sbjct: 288 KTITLREFIWCDEWYITLGWCTHFTKHLLLQCLRYLP*FGLNALHRSSTLLYFFC*FLHM 109
Query: 795 SIHGIVHDVDLNRH 836
SIHG+VHDV + H
Sbjct: 108 SIHGVVHDVKFDSH 67
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,182,022
Number of Sequences: 7669
Number of extensions: 109414
Number of successful extensions: 1225
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 254507877
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)