TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU998148.1|BU998148 HI10C07r HI Hordeum vulgare subsp. v... 350 6e-097
gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate sy... 266 3e-085
gb|BJ463533.1|BJ463533 BJ463533 K. Sato unpublished cDNA li... 268 3e-077
gb|BQ468536.1|BQ468536 HM01I14T HM Hordeum vulgare subsp. v... 270 6e-072
gb|CV057680.1|CV057680 BNEL2E7 Barley EST endosperm library... 217 1e-070
gb|BF619008.2|BF619008 HVSMEc0008G05f Hordeum vulgare seedl... 185 4e-054
gb|CA007166.1|CA007166 HU06P22r HU Hordeum vulgare subsp. v... 140 5e-047
gb|CA018261.1|CA018261 HV08B18r HV Hordeum vulgare subsp. v... 140 5e-047
gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgar... 175 2e-043
gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DA... 172 1e-042
gb|BU989121.1|BU989121 HF19N21r HF Hordeum vulgare subsp. v... 92 4e-033
emb|AJ238715.1|HVU238715 Hordeum vulgare partial complement... 128 3e-029
>gb|BU998148.1|BU998148 HI10C07r HI Hordeum vulgare subsp. vulgare cDNA clone HI10C07
5-PRIME, mRNA sequence
Length = 614
Score = 350 bits (759), Expect(2) = 6e-097
Identities = 147/176 (83%), Positives = 150/176 (85%)
Frame = +1 / +2
Query: 130 IAPHDVDLXXXXXXXXXXXXXXXXIWADIMRFFSNPRKPMILALARPDPKKNITTLVKAF 309
I PHDVDL +WADIMRFFSNPRKPMILALARPDPKKNITTLVKAF
Sbjct: 53 IVPHDVDLDSEEANEVSSDSPDPPVWADIMRFFSNPRKPMILALARPDPKKNITTLVKAF 232
Query: 310 GEHRELRNLANLTLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEV 489
GEH ELRNLANLTLIMGNRDVIDEMSSTN AVLTS LKLIDKYDLYGQVAYPKHHKQSEV
Sbjct: 233 GEHHELRNLANLTLIMGNRDVIDEMSSTNGAVLTSVLKLIDKYDLYGQVAYPKHHKQSEV 412
Query: 490 PDIYRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
PDIYRLAARTKGVFINCA +EPFGLTLIE AYGLPM T+NGGPV IHRVLDNGI
Sbjct: 413 PDIYRLAARTKGVFINCAYIEPFGLTLIEAAAYGLPMVATQNGGPVDIHRVLDNGI 580
Score = 267 bits (578), Expect = 4e-071
Identities = 117/176 (66%), Positives = 135/176 (76%)
Frame = -3 / -2
Query: 657 NSIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRL 478
N+I+KNP+Y+ RPTI G H *TI L+QGE KWFN T++K+ CS *TINI NFRL
Sbjct: 580 NAIVKNPVYINRPTILGSNHR*TISSSLDQGEPKWFNISTVNKHPLCSCR*TINIWNFRL 401
Query: 477 LMVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD 298
LMVLGVCHL I II +N*LE * QNS ICA*HFIN+IT+ HDQCK+C*ISQF +FTKC +
Sbjct: 400 LMVLGVCHLPIEIILVN*LEY*CQNSSICA*HFINNITVTHDQCKVC*ISQFMVFTKCLN 221
Query: 297 *SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW*T*AISISFLTVEVNIMWCY 130
SD+LL I TSKSKNH L V EEAHYISPN WIW* *A I F T+++NIM Y
Sbjct: 220 QRSDVLLGIWTSKSKNHGLARVREEAHYISPNWWIW*I*ANFIRFFTIKINIMRHY 53
Score = 252 bits (544), Expect = 2e-066
Identities = 113/151 (74%), Positives = 120/151 (79%)
Frame = -1 / -3
Query: 656 IPLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDC 477
+PLSRTRC+ TGPPF V +GRP A SIKVSPNGS AQLI TPFVLAAKR*ISGTSDC
Sbjct: 579 MPLSRTRCISTGPPFWVATIGRP*AAASIKVSPNGSI*AQLINTPFVLAAKR*ISGTSDC 400
Query: 476 LWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALT 297
LWCLGYATCP RSYLSINLS +VKTA FVLDISS+TSR PMI+VRFAKFLSS CSPNALT
Sbjct: 399 LWCLGYATCP*RSYLSINLSTDVKTAPFVLDISSITSRLPMINVRFAKFLSSWCSPNALT 220
Query: 296 RVVIFFXXXXXXXXXXXXXXXFEKKRIISAQ 204
VV+FF FEKKRIISAQ
Sbjct: 219 SVVMFFLGSGRARARIMGLRGFEKKRIISAQ 127
Score = 189 bits (407), Expect(2) = 1e-058
Identities = 83/118 (70%), Positives = 93/118 (78%)
Frame = +3 / +1
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI* 485
IW*T *TEKFSK Y DHG *C+**NVKHK SCFD STQVN* +*S+W SGIPQAP*AI*
Sbjct: 229 IW*TP*TEKFSKPYIDHG*P*CY**NVKHKWSCFDISTQVN*QV*SLWASGIPQAP*AI* 408
Query: 486 SS*YLSFSCENKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWACXHTSGS**WNS 659
SS YLSFS +NK Y LC+ *TIW HLD G +WST+ +PKWWAC +T GS* W+S
Sbjct: 409 SSRYLSFSGKNKGGVY*LCLY*TIWAHLDRGCCLWSTYGCYPKWWAC*YTPGS*QWHS 582
Score = 185 bits (398), Expect(2) = 7e-057
Identities = 85/118 (72%), Positives = 88/118 (74%)
Frame = -2 / -1
Query: 658 EFHYQEPDVCXQAHHFGXXXWVDHMXXPQSR*VQMVQPMHN**KLLLFSQLNDKYQELQI 479
E H QEP V QAHHFG VDH P+SR* QMVQ H+** LF LNDKY ELQI
Sbjct: 581 ECHCQEPGVYQQAHHFG*QP*VDHKQQPRSR*AQMVQYKHS**TPPLFLPLNDKYLELQI 402
Query: 478 AYGAWGMPLVHIDHIYQLT*VLKSKQLHLCLTFHQ*HHDSP*SV*DLLNFSVHDVHQM 305
AYGAWGMPL H DH QLT*VL SKQLHLCLTFHQ*HH P*S+* LLNFSVH VHQM
Sbjct: 401 AYGAWGMPLAHRDHTCQLT*VLMSKQLHLCLTFHQ*HHGYP*SM*GLLNFSVHGVHQM 228
Score = 164 bits (352), Expect(2) = 2e-047
Identities = 80/119 (67%), Positives = 88/119 (73%)
Frame = +2 / +3
Query: 302 KHLVNIVN*EI*QILH*SWGIVMSLMKCQAQMQLF*LQHSS*LINMIYMDKWHTPSTISN 481
+HLVN +N*EI*Q LH*SW VM LMKCQAQM+LF* Q+SS*L +MI M KWHTPSTISN
Sbjct: 225 RHLVNTMN*EI*QTLH*SWVTVMLLMKCQAQMELF*HQYSS*LTSMISMGKWHTPSTISN 404
Query: 482 LKFLIFIV*LREQKEFLSIVHWLNHLDSP*LRXXHMVYPXXXPEMVGLXTYIGFLIMEF 658
LKF IFIV* +EQ+ L V LNHL SP* R MVY P+MVGL Y GFL M F
Sbjct: 405 LKFQIFIV*RQEQRGCLLTVLILNHLGSP*SRLLLMVYLWLLPKMVGLLIYTGFLTMAF 581
Score = 57.4 bits (119), Expect(2) = 1e-058
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2 / +3
Query: 140 MMLTSTVRKEMEMAQVHQIHLFGLI*CASSQTPGSQ*F 253
MML V+K M++AQ+HQIH FGLI*CASS+T S *F
Sbjct: 63 MMLILIVKKRMKLAQIHQIHQFGLI*CASSRTLASP*F 176
Score = 55.6 bits (115), Expect(2) = 7e-057
Identities = 26/38 (68%), Positives = 27/38 (71%)
Frame = -2 / -1
Query: 244 ASGGLRRSALYQPK*VDLVNLSHLHFLPHCRGQHHVVL 131
A G RRSALYQPK VDLVNLS LH L H + QHH L
Sbjct: 167 ACEGSRRSALYQPKLVDLVNLS*LHSLLHYQDQHHEAL 54
Score = 45.1 bits (92), Expect(2) = 2e-047
Identities = 19/24 (79%), Positives = 22/24 (91%)
Frame = +3 / +1
Query: 180 LRFTRSTYLG*YNALLLKPPEAND 251
LRFTRST LG*YNALLL+P +A+D
Sbjct: 103 LRFTRSTSLG*YNALLLEPSQAHD 174
Score = 24.0 bits (46), Expect(2) = 6e-097
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +3
Query: 97 IAIPPGMEFS 126
I IPPGMEFS
Sbjct: 21 IHIPPGMEFS 50
>gb|AF261107.1|AF261107 Hordeum vulgare sucrose-phosphate synthase mRNA, partial cds
Length = 2085
Score = 266 bits (576), Expect(2) = 3e-085
Identities = 110/152 (72%), Positives = 127/152 (83%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW+ IMRFF+NPRKPMILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 271 IWSQIMRFFTNPRKPMILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 450
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
M +T+A+VLTS L LID+YDLYGQVAYPKHHK SEVPDIYRLA RTKG F+N A E FG
Sbjct: 451 MHNTSASVLTSVLTLIDEYDLYGQVAYPKHHKHSEVPDIYRLATRTKGAFVNVAYFEQFG 630
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
+TLIE GLP+ T+NG PV IH+VL+NG+
Sbjct: 631 VTLIEAAMNGLPVIATKNGAPVEIHQVLNNGL 726
Score = 165 bits (355), Expect(2) = 2e-048
Identities = 83/151 (54%), Positives = 95/151 (62%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PL T + TG PF V G+P+ SIKV+PN S A L K P VL AKR*+SGTS+CL
Sbjct: 722 PLLST*WISTGAPFFVAITGKPFIAASIKVTPNCSK*ATLTKAPLVLVAKR*MSGTSECL 543
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
CLGYAT PY+SY SI++S +VKT A VL I + SR P+ISVRFA LS R SPNA T
Sbjct: 542 *CLGYAT*PYKSYSSISVSTDVKTDALVLCIFEIASRLPIISVRFASSLSGRHSPNAFTS 363
Query: 293 VVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
VVIFF F KKRII QI
Sbjct: 362 VVIFFSGYGRATARIIGFRGFVKKRII*DQI 270
Score = 119 bits (255), Expect(2) = 1e-031
Identities = 62/155 (40%), Positives = 91/155 (58%)
Frame = -3 / -1
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+I+++ M R +I + TI L QG +K F +DK+ S *T+N+RNFR+L
Sbjct: 723 TIVEHLMDFNRSSIFCSNNRQTIHSGLYQGNAKLFEISHVDKSPLSSCG*TVNVRNFRVL 544
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD* 295
++LGVCHL+I II + * + * Q+ H N +T+ H C+I + Q+ FTKC
Sbjct: 543 VMLGVCHLTIQIILVY*CKH*CQDRRTRVVHL*NSLTVTHY*CEIRELPQWATFTKCLYK 364
Query: 294 SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW 190
IL RI T S+NH LP + +EAHY+ P+R I+
Sbjct: 363 RCYILFRIWTGNSQNHRLPRICKEAHYLRPDRRIF 259
Score = 93.2 bits (197), Expect(3) = 3e-028
Identities = 48/117 (41%), Positives = 69/117 (58%)
Frame = +3 / +3
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI* 485
IW* S TE +S+T++G * + + +H+C C D S N +* +W+SGIPQA A+*
Sbjct: 375 IW*MSPTEGARESHTNNG*P*GYFKDAQHECVCLDISAYTNRRV*FVWSSGIPQASQAL* 554
Query: 486 SS*YLSFSCENKRSFYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWACXHTSGS**WN 656
SS*+L FS +N F Q + TIW +LD G W + KW +C + SG+ W+
Sbjct: 555 SS*HLPFSHKN*GGFCQRGLFRTIWRYLDRGRYEWFACYCYKKWSSC*NPSGAQQWS 725
Score = 68.9 bits (144), Expect(2) = 3e-085
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRAR++RG +C+GR M+ IPPG+EF HI
Sbjct: 85 DGFEVILARKLRARVKRGANCYGRYMPRMVIIPPGVEFGHI 207
Score = 47.3 bits (97), Expect(2) = 2e-048
Identities = 25/41 (60%), Positives = 26/41 (63%)
Frame = -1 / -2
Query: 131 I*LNSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
I* NS PGGI I RP QL PRL LA SF A + SKPS
Sbjct: 206 I*PNSTPGGIITIRGI*RP*QLAPRLTLARSFLASMTSKPS 84
Score = 39.1 bits (79), Expect(3) = 3e-028
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3 / +3
Query: 9 *WF*SNYGPETQSKNKAWCELLWSXXXXYDCNPSWHGV*SY 131
*WF* + E SK++ W LLW+ Y N SW + SY
Sbjct: 84 *WF*GHTCKEASSKSQTWR*LLWALYASYGYNSSWC*IWSY 206
Score = 36.3 bits (73), Expect(2) = 1e-031
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3 / -1
Query: 129 MTKLHARRDCNHXXXXTTKAAHTTPYSCSEFPGHS*IKTII 7
MTK + RR+ NH T A T SCS+ P +KTII
Sbjct: 204 MTKFNTRRNYNHTRHITPIAVSATFDSCSKLPCKYDLKTII 82
Score = 30.4 bits (60), Expect(3) = 3e-028
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2 / +2
Query: 143 MLTSTVRKEMEMAQVHQIHLFGLI*CASSQTPGSQ*F 253
M+ + + K+ MAQ +I L GL *CAS Q GS *F
Sbjct: 212 MILT*MAKKKIMAQPLKIRLSGLR*CASLQILGSL*F 322
>gb|BJ463533.1|BJ463533 BJ463533 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32g04 5', mRNA sequence
Length = 705
Score = 268 bits (580), Expect(2) = 3e-077
Identities = 111/152 (73%), Positives = 129/152 (84%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW++IMRFF+NPRKP+ILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 169 IWSEIMRFFTNPRKPLILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 348
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
MS+ +AAVLTS L LID+YDLYGQVAYPKHHK SEV DIYRLAARTKG F+N A E FG
Sbjct: 349 MSNMSAAVLTSVLTLIDEYDLYGQVAYPKHHKHSEVLDIYRLAARTKGAFVNVAYFEQFG 528
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
+TLIE +GLP+ T+NG PV IH+VLDNG+
Sbjct: 529 VTLIEAAMHGLPVIATKNGAPVEIHQVLDNGL 624
Score = 160 bits (343), Expect = 1e-038
Identities = 81/151 (53%), Positives = 92/151 (60%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PLS T + TG PF V G+P SIKV+PN S A K PFVLAAKR*IS TS+CL
Sbjct: 620 PLSNTW*ISTGAPFFVAITGKPCMAASIKVTPNCSK*ATFTKAPFVLAAKR*ISRTSECL 441
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
C GYAT PY+SY SIN+S +VKTAA +L I + SR P+ISVR A L+ SP A T
Sbjct: 440 *CFGYAT*PYKSYSSINVSTDVKTAALILLILEIASRLPIISVRLASSLNGLHSPKAFTS 261
Query: 293 VVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
VVIFF F K RIIS QI
Sbjct: 260 VVIFFSGYGRATARIKGFLGFVKNRIISDQI 168
Score = 139 bits (299), Expect = 1e-032
Identities = 65/155 (41%), Positives = 98/155 (63%)
Frame = -3 / -1
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+++++ + R +I + *T+ L QG+++ F I K++ CSR *TINI+NF +
Sbjct: 621 TVVQHLVNFYRSSIFCCNYR*TMHGSLYQGDTELFKVSYIYKSTLCSRC*TINIKNF*VF 442
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD* 295
++L VCHL+I IIFIN + * QNSC HF N +T+ H+QC + + Q++ FTK F
Sbjct: 441 VMLWVCHLTIQIIFINQCKY*CQNSCTHITHFGNSLTVTHNQC*VSKLPQWSAFTKSFHK 262
Query: 294 SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW 190
+IL R+ TS S+N P + EE HY+ PNRWI+
Sbjct: 261 CCNILFRVWTSNSQNQRFPRICEEPHYLRPNRWIF 157
Score = 94.5 bits (200), Expect(2) = 1e-022
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = +3 / +3
Query: 348 TDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI*SS*YLSFSCENKRS 527
TD+G * + N ++CSCFD ST ++**I* +W+SGIP+A + SS*YLSFS ENK
Sbjct: 315 TDYG*P*GYFQNE*YECSCFDISTYID**I*FVWSSGIPKASQTLRSS*YLSFSSENKGC 494
Query: 528 FYQLCIG*TIWTHLD*GXXIWSTHXXHPKWWACXHTSG 641
F + + *TI HLD G W T + KW +C ++ G
Sbjct: 495 FCKCSLL*TIRCHLDRGCHAWFTCNCNKKWSSCRNSPG 608
Score = 40.5 bits (82), Expect(2) = 3e-077
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1 / +1
Query: 58 RGVSCFGRXXXXMIAIPPGMEFSHI 132
RG +C+GR M+ IPPG+EF H+
Sbjct: 31 RGANCYGRYMPRMVIIPPGVEFGHM 105
Score = 31.3 bits (62), Expect(2) = 1e-022
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2 / +2
Query: 182 QVHQIHLFGLI*CASSQTPGSQ*F 253
Q +IHLFGL *C SSQ G+ *F
Sbjct: 149 QPPKIHLFGLR*CGSSQILGNL*F 220
>gb|BQ468536.1|BQ468536 HM01I14T HM Hordeum vulgare subsp. vulgare cDNA clone HM01I14
5-PRIME, mRNA sequence
Length = 575
Score = 270 bits (584), Expect = 6e-072
Identities = 111/152 (73%), Positives = 128/152 (84%)
Frame = +1 / +3
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IWA++MRF +NP KPMILAL+RPDPKKNITTLVKAFGE R LR LANL LIMGNRD IDE
Sbjct: 63 IWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLVLIMGNRDDIDE 242
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
M NA VLT+ LKL+DKYDLYG VA+PKHH Q++VP+IYRL A+TKGVFIN ALVEPFG
Sbjct: 243 MPPGNANVLTTVLKLVDKYDLYGSVAFPKHHNQADVPEIYRLTAKTKGVFINPALVEPFG 422
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
LTLIE A+GLP+ T+NGGPV I L++G+
Sbjct: 423 LTLIEAAAHGLPIVATKNGGPVDITNALNSGL 518
Score = 156 bits (336), Expect = 9e-038
Identities = 75/125 (60%), Positives = 83/125 (66%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PL M TGPPF V +G P A SI V P GST A L+KTP VLA +R*ISGTS L
Sbjct: 514 PLFSAFVMSTGPPFLVATIGSPCAAASISVRPKGSTRAGLMKTPLVLAVRR*ISGTSAWL 335
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
CLG AT PYRSYLS + V+T A ISSM+S FPMI +FA LS R SPNALTR
Sbjct: 334 *CLGKATLPYRSYLSTSFRTVVRTFALPGGISSMSSLFPMIRTKFASSLSGRHSPNALTR 155
Query: 293 VVIFF 279
VV+FF
Sbjct: 154 VVMFF 140
Score = 103 bits (219), Expect = 1e-021
Identities = 48/143 (33%), Positives = 85/143 (59%)
Frame = -3 / -1
Query: 630 VXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLLMVLGVCHL 451
V R + G + + L+Q +++ ++ ID+++ IN+R+ L+++LG H
Sbjct: 491 VDRTAVLGGDNREPVRRSLDQCKAERLHKSRIDEDTLGLGREAINLRDVGLVVMLGEGHA 312
Query: 450 SI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRI 271
SI II ++ L+ ++ C+ H ++ I++PHDQ +C + F+KCFD SSD+L RI
Sbjct: 311 SIQIILVDQLQDSGEDVCVAGRHLVDVISVPHDQN*VCKFP*WAAFSKCFDKSSDVLFRI 132
Query: 270 RTSKSKNHWLPGV*EEAHYISPN 202
R + ++HWL V EE H++SP+
Sbjct: 131 RP*QRQDHWLVRVGEEPHHLSPD 63
>gb|CV057680.1|CV057680 BNEL2E7 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL2E7 5' similar to sucrose-phosphate
synthase, mRNA sequence
Length = 700
Score = 217 bits (469), Expect(2) = 1e-070
Identities = 91/121 (75%), Positives = 102/121 (84%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW+ IMRFF+NPRKPMILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 265 IWSQIMRFFTNPRKPMILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 444
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
M +T+A+VLTS L LID+YDLYGQVAYPKHHK SEVPDIYRLA RTKG F+N A E
Sbjct: 445 MHNTSASVLTSVLTLIDEYDLYGQVAYPKHHKHSEVPDIYRLATRTKGAFVNVAYFEQXA 624
Query: 562 L 564
L
Sbjct: 625 L 627
Score = 131 bits (281), Expect(2) = 2e-038
Identities = 66/114 (57%), Positives = 74/114 (64%)
Frame = -1 / -3
Query: 542 AQLIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSR 363
A L K P VL AKR*+SGTS+CL CLGYAT PY+SY SI++S +VKT A VL I + SR
Sbjct: 605 ATLTKAPLVLVAKR*MSGTSECL*CLGYAT*PYKSYSSISVSTDVKTDALVLCIFEIASR 426
Query: 362 FPMISVRFAKFLSSRCSPNALTRVVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
P+ISVRFA LS R SPNA T VVIFF F KKRII QI
Sbjct: 425 LPIISVRFASSLSGRHSPNAFTSVVIFFSGYGRATARIIGFRGFVKKRII*DQI 264
Score = 107 bits (228), Expect(2) = 7e-028
Identities = 51/116 (43%), Positives = 73/116 (62%)
Frame = -3 / -2
Query: 537 IDKNSFCSRS*TINIRNFRLLMVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIP 358
+DK+ S *T+N+RNFR+L++LGVCHL+I II + * + * Q+ H N +T+
Sbjct: 600 VDKSPLSSCG*TVNVRNFRVLVMLGVCHLTIQIILVY*CKH*CQDRRTRVVHL*NSLTVT 421
Query: 357 HDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWIW 190
H C+I + Q+ FTKC IL RI T S+NH LP + +EAHY+ P+R I+
Sbjct: 420 HY*CEIRELPQWATFTKCLYKRCYILFRIWTGNSQNHRLPRICKEAHYLRPDRRIF 253
Score = 68.9 bits (144), Expect(2) = 1e-070
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRAR++RG +C+GR M+ IPPG+EF HI
Sbjct: 79 DGFEVILARKLRARVKRGANCYGRYMPRMVIIPPGVEFGHI 201
Score = 67.5 bits (141), Expect(4) = 5e-023
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +3 / +3
Query: 306 IW*TS*TEKFSKSYTDHGES*CH**NVKHKCSCFDFSTQVN**I*SIWTSGIPQAP*AI* 485
IW* S TE +S+T++G * + + +H+C C D S N +* +W+SGIPQA A+*
Sbjct: 369 IW*MSPTEGARESHTNNG*P*GYFKDAQHECVCLDISAYTNRRV*FVWSSGIPQASQAL* 548
Query: 486 SS*YLSFSCENKRSFYQ 536
SS*+L FS +N F Q
Sbjct: 549 SS*HLPFSHKN*GGFCQ 599
Score = 47.3 bits (97), Expect(2) = 2e-038
Identities = 25/41 (60%), Positives = 26/41 (63%)
Frame = -1 / -3
Query: 131 I*LNSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
I* NS PGGI I RP QL PRL LA SF A + SKPS
Sbjct: 200 I*PNSTPGGIITIRGI*RP*QLAPRLTLARSFLASMTSKPS 78
Score = 39.1 bits (79), Expect(4) = 5e-023
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3 / +3
Query: 9 *WF*SNYGPETQSKNKAWCELLWSXXXXYDCNPSWHGV*SY 131
*WF* + E SK++ W LLW+ Y N SW + SY
Sbjct: 78 *WF*GHTCKEASSKSQTWR*LLWALYASYGYNSSWC*IWSY 200
Score = 36.3 bits (73), Expect(2) = 7e-028
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3 / -2
Query: 129 MTKLHARRDCNHXXXXTTKAAHTTPYSCSEFPGHS*IKTII 7
MTK + RR+ NH T A T SCS+ P +KTII
Sbjct: 198 MTKFNTRRNYNHTRHITPIAVSATFDSCSKLPCKYDLKTII 76
Score = 30.4 bits (60), Expect(4) = 5e-023
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2 / +2
Query: 143 MLTSTVRKEMEMAQVHQIHLFGLI*CASSQTPGSQ*F 253
M+ + + K+ MAQ +I L GL *CAS Q GS *F
Sbjct: 206 MILT*MAKKKIMAQPLKIRLSGLR*CASLQILGSL*F 316
Score = 24.9 bits (48), Expect(4) = 5e-023
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1 / +3
Query: 523 GVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIH 636
G F L +TLIE G T+NG IH
Sbjct: 585 GGFCQRGLFRTXCVTLIEAAMNGXACIATKNGXSCEIH 698
>gb|BF619008.2|BF619008 HVSMEc0008G05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0008G05f, mRNA sequence
Length = 590
Score = 185 bits (398), Expect(3) = 4e-054
Identities = 80/110 (72%), Positives = 93/110 (84%)
Frame = +1 / +3
Query: 247 MILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDEMSSTNAAVLTSALKL 426
+ILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +MS+ +AAVLTS L L
Sbjct: 60 VILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISKMSNMSAAVLTSVLTL 239
Query: 427 IDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFGLTLIE 576
ID+YDLYGQVAYPKHHK SEV DIYRLAA+T+G F+N A + G+TLIE
Sbjct: 240 IDEYDLYGQVAYPKHHKHSEVLDIYRLAAKTRGAFVNVAYFKQCGVTLIE 389
Score = 121 bits (259), Expect(2) = 9e-031
Identities = 58/99 (58%), Positives = 68/99 (68%)
Frame = -1 / -2
Query: 575 SIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAA 396
SIKV+P+ A K P V AAKR*IS TS+CL C GYAT PY+SY SIN+S +VKTAA
Sbjct: 388 SIKVTPHCLK*ATFTKAPLVFAAKR*ISRTSECL*CFGYAT*PYKSYSSINVSTDVKTAA 209
Query: 395 FVLDISSMTSRFPMISVRFAKFLSSRCSPNALTRVVIFF 279
+L I + SR P+ISVR A L+ SP A T VVIFF
Sbjct: 208 LILLILEIASRLPIISVRLASSLNGLHSPKAFTSVVIFF 92
Score = 107 bits (228), Expect = 7e-023
Identities = 51/110 (46%), Positives = 71/110 (64%)
Frame = -3 / -1
Query: 576 LNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLLMVLGVCHLSI*IIFIN*LEC*SQNSC 397
L QG++ F I K++ C R *TINI+NF + ++L VCHL+I IIFIN + * QNSC
Sbjct: 389 LYQGDTALFKVSYIYKSTPCFRC*TINIKNF*VFVMLWVCHLTIQIIFINQCKY*CQNSC 210
Query: 396 ICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNH 247
HF N +T+ H+QC + + Q++ FTK F +IL R+ TS S+NH
Sbjct: 209 THITHFGNSLTVTHNQC*VSKLPQWSAFTKSFHKCCNILFRVWTSNSQNH 60
Score = 34.1 bits (68), Expect(3) = 4e-054
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +1 / +2
Query: 202 IWADIMRFFSNPRK 243
IW++IMRFF+NPRK
Sbjct: 14 IWSEIMRFFTNPRK 55
Score = 31.8 bits (63), Expect(2) = 9e-031
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3 / -2
Query: 240 PGV*EEAHYISPNRWIW 190
P + EE HY+ PNRWI+
Sbjct: 52 PRICEEPHYLRPNRWIF 2
Score = 30.9 bits (61), Expect(3) = 4e-054
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1 / +1
Query: 589 GLPMXXTRNGGPVXIHRVLDNGI 657
GLP+ +NG P IH+ DNG+
Sbjct: 403 GLPVIAPKNGAPWKIHQGWDNGL 471
>gb|CA007166.1|CA007166 HU06P22r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P22
5-PRIME, mRNA sequence
Length = 660
Score = 140 bits (300), Expect(2) = 5e-047
Identities = 59/79 (74%), Positives = 70/79 (88%)
Frame = +1 / +3
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW++IMRFF+NPRKP+ILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 423 IWSEIMRFFTNPRKPLILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 602
Query: 382 MSSTNAAVLTSALKLIDKY 438
MS+ +AAVLTS L LID+Y
Sbjct: 603 MSNMSAAVLTSVLTLIDEY 659
Score = 88.1 bits (186), Expect(2) = 2e-025
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = -3 / -2
Query: 438 IFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSK 259
IFIN + * QNSC HF N +T+ H+QC + + Q++ FTK F +IL R+ TS
Sbjct: 659 IFINQCKY*CQNSCTHITHFGNSLTVTHNQC*VSKLPQWSAFTKSFHKCCNILFRVWTSN 480
Query: 258 SKNHWLPGV*EEAHYISPNRWIW 190
S+N P + EE HY+ PNRWI+
Sbjct: 479 SQNQRFPRICEEPHYLRPNRWIF 411
Score = 67.5 bits (141), Expect(2) = 5e-047
Identities = 23/41 (56%), Positives = 33/41 (80%)
Frame = +1 / +3
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRAR++RG +C+GR M+ IPPG+EF H+
Sbjct: 237 DGFEVMLARKLRARVKRGANCYGRYMPRMVIIPPGVEFGHM 359
Score = 47.3 bits (97), Expect(2) = 2e-025
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -1 / -3
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
NS PGGI I RP QL PRL LA SF A + SKPS
Sbjct: 349 NSTPGGIITIRGM*RP*QLAPRLTLARSFLASITSKPS 236
>gb|CA018261.1|CA018261 HV08B18r HV Hordeum vulgare subsp. vulgare cDNA clone HV08B18
5-PRIME, mRNA sequence
Length = 634
Score = 140 bits (300), Expect(2) = 5e-047
Identities = 59/79 (74%), Positives = 70/79 (88%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW++IMRFF+NPRKP+ILA+ARP P+KNITTLVKAFGE R LR LANLTLIMGNR+ I +
Sbjct: 397 IWSEIMRFFTNPRKPLILAVARPYPEKNITTLVKAFGECRPLRELANLTLIMGNREAISK 576
Query: 382 MSSTNAAVLTSALKLIDKY 438
MS+ +AAVLTS L LID+Y
Sbjct: 577 MSNMSAAVLTSVLTLIDEY 633
Score = 88.1 bits (186), Expect(2) = 2e-025
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = -3 / -2
Query: 438 IFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSK 259
IFIN + * QNSC HF N +T+ H+QC + + Q++ FTK F +IL R+ TS
Sbjct: 633 IFINQCKY*CQNSCTHITHFGNSLTVTHNQC*VSKLPQWSAFTKSFHKCCNILFRVWTSN 454
Query: 258 SKNHWLPGV*EEAHYISPNRWIW 190
S+N P + EE HY+ PNRWI+
Sbjct: 453 SQNQRFPRICEEPHYLRPNRWIF 385
Score = 67.5 bits (141), Expect(2) = 5e-047
Identities = 23/41 (56%), Positives = 33/41 (80%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHI 132
DGF++ +ARKLRAR++RG +C+GR M+ IPPG+EF H+
Sbjct: 211 DGFEVMLARKLRARVKRGANCYGRYMPRMVIIPPGVEFGHM 333
Score = 47.3 bits (97), Expect(2) = 2e-025
Identities = 23/38 (60%), Positives = 24/38 (63%)
Frame = -1 / -3
Query: 122 NSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPS 9
NS PGGI I RP QL PRL LA SF A + SKPS
Sbjct: 323 NSTPGGIITIRGM*RP*QLAPRLTLARSFLASITSKPS 210
>gb|CK123660.1|CK123660 BES1824105a02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A025 5-PRIME, mRNA sequence
Length = 759
Score = 175 bits (377), Expect = 2e-043
Identities = 72/103 (69%), Positives = 84/103 (81%)
Frame = +1 / +1
Query: 349 LIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGV 528
LIMGNR+ I +MS+ +AAVLTS L LID+YDLYGQVAYPKHHK SEV DIYRLAARTKG
Sbjct: 16 LIMGNREAISKMSNMSAAVLTSVLTLIDEYDLYGQVAYPKHHKHSEVLDIYRLAARTKGA 195
Query: 529 FINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
F+N A E FG+TLIE +GLP+ T+NG PV IH+VLDNG+
Sbjct: 196 FVNVAYFEQFGVTLIEAAMHGLPVIATKNGAPVEIHQVLDNGL 324
Score = 129 bits (276), Expect = 2e-029
Identities = 61/104 (58%), Positives = 71/104 (68%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PLS T + TG PF V G+P SIKV+PN S A K PFVLAAKR*IS TS+CL
Sbjct: 320 PLSNTW*ISTGAPFFVAITGKPCMAASIKVTPNCSK*ATFTKAPFVLAAKR*ISRTSECL 141
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVR 342
C GYAT PY+SY SIN+S +VKTAA +L I + SR P+IS R
Sbjct: 140 *CFGYAT*PYKSYSSINVSTDVKTAALILLILEIASRLPIISGR 9
>gb|BG369152.1|BG369152 HVSMEi0022M21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M21f, mRNA sequence
Length = 826
Score = 172 bits (371), Expect = 1e-042
Identities = 73/118 (61%), Positives = 83/118 (70%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHIAPHDVDLXXXXXXXXXXXX 189
+GFD+ M RKLRARI+RGVSC+GR MI IPPGMEFSHI PHDVDL
Sbjct: 256 NGFDVIMERKLRARIKRGVSCYGREMPRMIPIPPGMEFSHIVPHDVDLDSEEANEVSSDS 435
Query: 190 XXXXIWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGN 363
+WADIMRFF +P KPMILA+A DPKKNIT A+GEHREL N A+L L+MGN
Sbjct: 436 PDPPVWADIMRFF*DPHKPMILAVAEADPKKNITDAGDAWGEHRELEN*ADLALVMGN 609
Score = 157 bits (337), Expect = 7e-038
Identities = 71/125 (56%), Positives = 84/125 (67%)
Frame = -3 / -2
Query: 381 FINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYISPN 202
F + + HDQCK+ I QFT+F C SD+LL I S SKNH L V EEAHYI PN
Sbjct: 627 FHHPTQVTHDQCKVRLIFQFTVFPPCISSVSDVLLGICLSNSKNHGLVRVSEEAHYIGPN 448
Query: 201 RWIW*T*AISISFLTVEVNIMWCYMTKLHARRDCNHXXXXTTKAAHTTPYSCSEFPGHS* 22
RWIW* *A ISF T+++NIM YM KLH R+ NH TT AA+TT YSCS+FP H+
Sbjct: 447 RWIW*I*ANFISFFTIKINIMRHYMAKLHTGRNWNHTRHFTTVAANTTLYSCSKFPLHNY 268
Query: 21 IKTII 7
IK+II
Sbjct: 267 IKSII 253
Score = 105 bits (223), Expect = 3e-022
Identities = 51/79 (64%), Positives = 57/79 (72%)
Frame = -2 / -1
Query: 244 ASGGLRRSALYQPK*VDLVNLSHLHFLPHCRGQHHVVLYD*TPCQEGLQSXXXXXDQSSS 65
A GLRRSALY+PK VDLVNLS LH L H + QHH LY *TP +E L+S D+SS
Sbjct: 490 ACEGLRRSALYRPKQVDLVNLS*LH*LLHYQDQHHEALYG*TPYREELESYEAFHDRSS* 311
Query: 64 HHALFLL*VSGP*LDQNHH 8
HHALFLL*VS P*L Q H+
Sbjct: 310 HHALFLL*VSSP*LHQIHY 254
Score = 103 bits (220), Expect = 9e-022
Identities = 59/117 (50%), Positives = 68/117 (58%)
Frame = +2 / +2
Query: 8 MMVLI*LWPGNSEQE*GVV*AALVVXXXX*LQSLLAWSLVI*HHMMLTSTVRKEMEMAQV 187
+M L+*LW GN EQE* VV AA VV * Q L WSL I* MML V+K M++AQ+
Sbjct: 254 IMDLM*LWRGNLEQE*SVVLAATVVKCLV*FQFLPVWSLAI*CLMMLILIVKKLMKLAQI 433
Query: 188 HQIHLFGLI*CASSQTPGSQ*FXXXXXXXXXXXXXXXXKHLVNIVN*EI*QILH*SW 358
HQIHLFG I*CASS+T S *F H N VN +I + LH SW
Sbjct: 434 HQIHLFGPI*CASSETLTSP*FLLLLRQIPRRTSLTLEMHGGNTVNWKIRRTLHWSW 604
>gb|BU989121.1|BU989121 HF19N21r HF Hordeum vulgare subsp. vulgare cDNA clone HF19N21
5-PRIME, mRNA sequence
Length = 499
Score = 91.8 bits (194), Expect(2) = 4e-033
Identities = 38/50 (76%), Positives = 43/50 (86%)
Frame = +1 / +3
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPD 495
TLIMGNR+ I +MS+ +AAVLTS L LID+YDLYGQVAYPKHHK SEV D
Sbjct: 348 TLIMGNREAISKMSNMSAAVLTSVLTLIDEYDLYGQVAYPKHHKHSEVLD 497
Score = 70.7 bits (148), Expect(2) = 4e-033
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +1 / +1
Query: 232 NPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
+PRKP+ILA+ARP P+KNITTLVKAFGE R LR LANL
Sbjct: 10 DPRKPLILAVARPYPEKNITTLVKAFGECRPLRELANL 123
>emb|AJ238715.1|HVU238715 Hordeum vulgare partial complement codded sucrose-phosphate
synthase 1 (235 bp)
Length = 235
Score = 128 bits (274), Expect = 3e-029
Identities = 53/78 (67%), Positives = 55/78 (70%)
Frame = +1 / -1
Query: 55 RRGVSCFGRXXXXMIAIPPGMEFSHIAPHDVDLXXXXXXXXXXXXXXXXIWADIMRFFSN 234
RRGVSC+GR MI IPPGMEFSHI PHDVDL +WADIMR FSN
Sbjct: 235 RRGVSCYGREMPRMIPIPPGMEFSHIVPHDVDLDSEEANEVSSDSPDPPVWADIMRXFSN 56
Query: 235 PRKPMILALARPDPKKNI 288
PRKPMILALARPDPKKNI
Sbjct: 55 PRKPMILALARPDPKKNI 2
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 266,218,068
Number of Sequences: 312970
Number of extensions: 3300868
Number of successful extensions: 19674
Number of sequences better than 1.0e-020: 18
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7465340784
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)