TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI949868.1|BI949868 HVSMEl0016J08f Hordeum vulgare spike... 205 2e-052
>gb|BI949868.1|BI949868 HVSMEl0016J08f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0016J08f, mRNA sequence
Length = 527
Score = 205 bits (442), Expect = 2e-052
Identities = 85/122 (69%), Positives = 96/122 (78%)
Frame = -2 / +3
Query: 594 PETNRKDVNLPGILQSPISNMLRKVEKVSQDIPKHRKVTHPEYEVETANGRITKRRKTRS 415
PET RK+ N+ G++ SPISN+LRKVEK SQD+P HRKVTH EYEVETANG+ITKR+KT+S
Sbjct: 54 PETKRKNANISGVIHSPISNVLRKVEKASQDVPNHRKVTHHEYEVETANGKITKRKKTKS 233
Query: 414 PVMFGEPNSQKPLHNXXXXXXXXXXXVPTRSRAHPANIGELFSEGSLNPYADDPYAFD*K 235
VMFGEPN+QK L N V RSR HPANIGELFSEGSLNPYADDP+A *K
Sbjct: 234 TVMFGEPNTQKSLQNTADKDVTKTRKVVARSRPHPANIGELFSEGSLNPYADDPFALG*K 413
Query: 234 LT 229
LT
Sbjct: 414 LT 419
Score = 191 bits (412), Expect = 3e-048
Identities = 89/122 (72%), Positives = 93/122 (76%)
Frame = +2 / -2
Query: 230 VSF*SKA*GSSAYGFKEPSENNSPMFAGCARDLVGTFFSFLTSLSVVLCNGF*EFGSPNM 409
VSF* A GSSAYGFKEPSENNSP+FAG RDL TF F+TSLS V CN F* FGSPNM
Sbjct: 418 VSF*PNAKGSSAYGFKEPSENNSPIFAGWGRDLATTFLVFVTSLSAVFCNDF*VFGSPNM 239
Query: 410 TGLLVFLRFVILPFAVSTSYSGWVTFLCLGIS*DTFSTFLNMFEIGDCKIPGKFTSFRLV 589
T LLVFLRFVI PFAVSTSYS VTFL LG S* FSTFL+ EIG+C P F FRLV
Sbjct: 238 TVLLVFLRFVIFPFAVSTSYSWCVTFL*LGTS*LAFSTFLSTLEIGECITPDMFAFFRLV 59
Query: 590 SG 595
SG
Sbjct: 58 SG 53
Score = 177 bits (380), Expect = 7e-044
Identities = 81/134 (60%), Positives = 96/134 (71%)
Frame = +1 / -1
Query: 211 KNDTSRRELLVKSIRVVSIRIQGTLRE*FTNVCRMCTGSCRNLF*FFNIFVSSIMQWFLR 390
K T+RRELL + RV+SI IQG L +*F+++CRM TGSC NL F NI VSSI+Q L
Sbjct: 437 KISTNRRELLAQCKRVISIWIQGALGK*FSDICRMGTGSCNNLSCFCNILVSSILQ*LLS 258
Query: 391 VRFTKHDRAPSFPALCDSSICCLNFVFRVGYLSMFRNILRHFLYLSQHVRNW*L*NPR*V 570
VRF KHD SF ALCD SICCL+F+F V YLS+ RNIL FLYL Q+VRNW + N R V
Sbjct: 257 VRFPKHDSTLSFLALCDFSICCLHFIFMVCYLSVIRNILTCFLYLPQYVRNWRVYNSRYV 78
Query: 571 YVLPIGLRTYQLDL 612
+LP GLRT+ L
Sbjct: 77 CILPFGLRTWTWQL 36
Score = 161 bits (347), Expect = 2e-039
Identities = 77/123 (62%), Positives = 85/123 (69%)
Frame = -1 / +2
Query: 598 KSGDQSEGRKLTWDFTITNFEHVEKGRESVSGYS*T*KGNPP*IRS*DSKWKNHKAQEN* 419
+S DQ+E K W +T+ NF E+GRES SG S*+ KGN P*I S DSKWKNHKAQEN*
Sbjct: 50 RS*DQTEECKHIWSYTLANF*RTEEGRESKSGCS*SQKGNTP*I*SGDSKWKNHKAQEN* 229
Query: 418 EPCHVW*TELSETIA*YY*QRC*KTKKGSYKIPCTSCKHW*IIL*GFLESVC*RPLCF*L 239
E CHVW TE SE IA Y *Q C K KKG KIP SCK+ II G LES+C* P C L
Sbjct: 230 EYCHVWGTEHSEVIAKYC*QGCYKNKKGCCKIPSPSCKYRRIIFRGLLESIC**PFCIGL 409
Query: 238 EAH 230
EAH
Sbjct: 410 EAH 418
Score = 152 bits (327), Expect = 1e-036
Identities = 77/125 (61%), Positives = 86/125 (68%)
Frame = +3 / -3
Query: 225 QA*ASSQKHKGRQHTDSRNPQRIIHQCLQDVHGIL*EPFLVF*HLCQ*YYAMVSESSVHQ 404
Q *ASS KG QH DSR+P++II + LQD GIL +PFL *H CQ Y+AM SE SV Q
Sbjct: 423 QT*ASSPMQKGHQHMDSRSPRKIILRYLQDGDGILQQPFLFL*HPCQQYFAMTSECSVPQ 244
Query: 405 T*QGS*FSCAL*FFHLLSQLRIQGGLPFYV*EYPETLSLPFSTCSKLVIVKSQVSLRPSD 584
T*Q S*FSCAL*FFHLLS L I G LPF *E+P+ LSLP S KL V Q+ L S
Sbjct: 243 T*QYS*FSCAL*FFHLLSPLHIHGVLPFCD*EHPDLLSLPSSVR*KLASV*LQICLHSSV 64
Query: 585 WSPDL 599
WS DL
Sbjct: 63 WSQDL 49
Score = 137 bits (293), Expect = 7e-032
Identities = 69/109 (63%), Positives = 77/109 (70%)
Frame = -3 / +1
Query: 596 VRRPIGRT*TYLGFYNHQFRTC*ER*RKCLRIFLNIER*PTLNTKLRQQMEESQSAGKLG 417
V RP GR TYL Y QF T * R*RK +R+FL ER* T+N K RQQME+SQSA KL
Sbjct: 52 VLRPNGRMQTYLELYTRQFLTY*GR*RKQVRMFLITER*HTMNMKWRQQMEKSQSARKLR 231
Query: 416 ALSCLVNRTLRNHCIILLTKMLKN*KRFLQDPVHILQTLVNYSLRVP*I 270
LSCL NRTLR+HC ILLT+ML+ +R LQDPV ILQ NY R P*I
Sbjct: 232 VLSCLGNRTLRSHCKILLTRMLQKQERLLQDPVPILQISENYFPRAP*I 378
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 284,019,139
Number of Sequences: 312970
Number of extensions: 4209914
Number of successful extensions: 39683
Number of sequences better than 1.0e-020: 1
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6447339768
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)