TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949673.2.1
(636 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA li... 243 1e-063
gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedl... 236 1e-061
gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA li... 140 6e-056
gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA li... 140 6e-056
gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. v... 209 2e-053
gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike... 117 9e-051
gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedl... 196 1e-049
gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA li... 190 5e-048
gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA li... 184 4e-046
gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA li... 182 2e-045
gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. v... 180 8e-045
gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA li... 174 5e-043
gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. v... 172 2e-042
gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedl... 163 7e-040
gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. v... 161 2e-039
gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedl... 84 1e-035
gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA li... 149 2e-035
gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow st... 147 5e-035
gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. v... 84 8e-034
gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. v... 84 8e-034
gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no... 143 8e-034
gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA li... 141 3e-033
gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA,... 140 6e-033
gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. v... 140 6e-033
gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike... 139 1e-032
gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. v... 80 4e-032
gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachi... 124 4e-031
gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA li... 133 9e-031
gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedl... 130 8e-030
gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA li... 78 2e-029
gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. v... 80 9e-029
gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachi... 125 2e-028
gb|BI957127.1|BI957127 HVSMEn0007J20f Hordeum vulgare rachi... 84 2e-028
gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, dro... 93 6e-028
gb|BJ456704.1|BJ456704 BJ456704 K. Sato unpublished cDNA li... 84 8e-028
gb|BU999880.1|BU999880 HS17B20u HS Hordeum vulgare subsp. v... 84 8e-028
gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. v... 122 2e-027
gb|AV931399.1|AV931399 AV931399 K. Sato unpublished cDNA li... 84 3e-027
gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. v... 121 3e-027
emb|X92754.1|HVCADMRNA H.vulgare mRNA for cinnamyl alcohol ... 78 7e-027
gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedl... 119 2e-026
gb|BI957446.1|BI957446 HVSMEn0009J16f Hordeum vulgare rachi... 84 2e-026
gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA li... 118 3e-026
gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. v... 80 5e-026
gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA li... 111 3e-024
gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA li... 110 7e-024
gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA li... 110 7e-024
gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. v... 107 6e-023
gb|AL509755.1|AL509755 AL509755 Hordeum vulgare Barke devel... 63 1e-021
>gb|AV916085.1|AV916085 AV916085 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 5', mRNA sequence
Length = 616
Score = 243 bits (524), Expect = 1e-063
Identities = 101/148 (68%), Positives = 124/148 (83%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPM
Sbjct: 68 VISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPM 247
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
GQMVVVG P++PL +PA+++ +CQAMLDFAG+HGITADVEVV MD
Sbjct: 248 GQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMD 427
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGSKIG 192
YVNTA++RLE+NDVRYRFV+DVAGS++G
Sbjct: 428 YVNTAVERLEKNDVRYRFVIDVAGSQLG 511
Score = 100 bits (213), Expect(2) = 6e-031
Identities = 47/91 (51%), Positives = 58/91 (63%)
Frame = +3 / -1
Query: 192 SNLAARDVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTP 371
+ LAA DVD+EAVP +V L LD +DVVH DDL +RGD VL +V+H LA+ AA P
Sbjct: 511 AQLAAGDVDDEAVPHVVLLQPLDRRVDVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVP 332
Query: 372 GHALPAGDEAEGRHLERLGGQADDDHLAHRL 464
G AL A D+ G + L +AD HL HRL
Sbjct: 331 GQALAASDDGVGWQRQGLARRADHHHLPHRL 239
Score = 87.2 bits (184), Expect(2) = 1e-036
Identities = 40/52 (76%), Positives = 42/52 (80%)
Frame = +1 / -2
Query: 193 PILLPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
P LPATS TKRYLTSF S R AVLT*SI TTSTSAV+PC PAKSS+AW S
Sbjct: 510 PSWLPATSMTKRYLTSFFSSRSTAVLT*SILTTSTSAVMPCFPAKSSIAWQS 355
Score = 85.8 bits (181), Expect(2) = 1e-036
Identities = 41/77 (53%), Positives = 46/77 (59%)
Frame = +1 / -2
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRNXXX 585
AG+ G +G PTTTI PIG SSSGT+G ADTVSM PS VPAAA ICS S LT+N
Sbjct: 297 AGSARGSLGAPTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASA 118
Query: 586 XXXXXXXXXXXXDVLMT 636
D L+T
Sbjct: 117 PRRSSASSRFLGDELIT 67
Score = 70.7 bits (148), Expect(2) = 6e-021
Identities = 31/44 (70%), Positives = 33/44 (75%)
Frame = -3 / +3
Query: 631 SARRWASGTRPSAASVPTRSWSAATPSR*GRRRAPWTASSTRCR 500
SARR S R S+AS PTRSWSA TPS+* RR WTASSTRCR
Sbjct: 72 SARRRGSARRRSSASAPTRSWSARTPSK*RLRRGRWTASSTRCR 203
Score = 53.3 bits (110), Expect(2) = 6e-031
Identities = 25/38 (65%), Positives = 27/38 (71%)
Frame = +3 / -1
Query: 519 AVQGARRRPHLLGVAADQERVGTEAAEGLVPLAQRRAD 632
AV RR HLLGV ADQERVG EA E L+ L +RRAD
Sbjct: 184 AVHRPRRSLHLLGVLADQERVGAEALERLLALPRRRAD 71
Score = 51.0 bits (105), Expect(2) = 6e-021
Identities = 28/47 (59%), Positives = 28/47 (59%)
Frame = -3 / +3
Query: 340 RPCSTLPASTGSPRMWRSSGWTTSIPPSSA*RGTMSGTASLSTSRAA 200
R C T ST SPR RSS WTTS SS R T GTAS STS AA
Sbjct: 363 RRCWTSRGSTASPRTSRSSRWTTSTRRSSGWRRTT*GTASSSTSPAA 503
>gb|BF257150.3|BF257150 HVSMEf0012A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012A06f, mRNA sequence
Length = 852
Score = 236 bits (509), Expect = 1e-061
Identities = 99/148 (66%), Positives = 122/148 (82%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPM
Sbjct: 53 VISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPM 232
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
GQMVVVG P++PL +PA+++ +CQAMLDFAG+HGITADVEVV MD
Sbjct: 233 GQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMD 412
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGSKIG 192
YVNTA++RLE+NDVR RFV+DVAG ++G
Sbjct: 413 YVNTAVERLEKNDVRDRFVIDVAGRQLG 496
Score = 95.0 bits (201), Expect(2) = 3e-029
Identities = 45/91 (49%), Positives = 56/91 (61%)
Frame = +3 / -3
Query: 192 SNLAARDVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTP 371
+ L A DVD+EAVP +V L LD + VVH DDL +RGD VL +V+H LA+ AA P
Sbjct: 496 AQLPAGDVDDEAVPHVVLLQPLDRRVHVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVP 317
Query: 372 GHALPAGDEAEGRHLERLGGQADDDHLAHRL 464
G AL A D+ G + L +AD HL HRL
Sbjct: 316 GQALAASDDGVGWQRQGLARRADHHHLPHRL 224
Score = 85.8 bits (181), Expect(2) = 5e-035
Identities = 41/77 (53%), Positives = 46/77 (59%)
Frame = +1 / -1
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRNXXX 585
AG+ G +G PTTTI PIG SSSGT+G ADTVSM PS VPAAA ICS S LT+N
Sbjct: 282 AGSARGSLGAPTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASA 103
Query: 586 XXXXXXXXXXXXDVLMT 636
D L+T
Sbjct: 102 PRRSSASSRFLGDELIT 52
Score = 81.7 bits (172), Expect(2) = 5e-035
Identities = 38/52 (73%), Positives = 40/52 (76%)
Frame = +1 / -1
Query: 193 PILLPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
P LPATS TKR LTSF S R AV T*SI TTSTSAV+PC PAKSS+AW S
Sbjct: 495 PSCLPATSMTKRSLTSFFSSRSTAVFT*SILTTSTSAVMPCFPAKSSIAWQS 340
Score = 53.3 bits (110), Expect(2) = 3e-029
Identities = 25/38 (65%), Positives = 27/38 (71%)
Frame = +3 / -3
Query: 519 AVQGARRRPHLLGVAADQERVGTEAAEGLVPLAQRRAD 632
AV RR HLLGV ADQERVG EA E L+ L +RRAD
Sbjct: 169 AVHRPRRSLHLLGVLADQERVGAEALERLLALPRRRAD 56
>gb|BJ447263.1|BJ447263 BJ447263 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 5', mRNA sequence
Length = 575
Score = 140 bits (301), Expect(2) = 6e-056
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS GKR+EAL RLGAD FLVSRDPEQM+AA GT+DG++DTVSA HP+ PL L+KPM
Sbjct: 21 VISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPM 200
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
GQMV VG PTKPL++PA+++
Sbjct: 201 GQMVFVGGPTKPLELPAYAI 260
Score = 105 bits (223), Expect = 3e-022
Identities = 47/88 (53%), Positives = 59/88 (67%)
Frame = +3 / -1
Query: 201 AARDVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTPGHA 380
AARDVD+EAV D+V L+ +DVVH LH+RGD VL + +HGLA+PDAA PG A
Sbjct: 455 AARDVDDEAVADVVLREPLERRVDVVHLYHLHLRGDAVLCREFQHGLAVPDAADAVPGDA 276
Query: 381 LPAGDEAEGRHLERLGGQADDDHLAHRL 464
LPA + R L+RLG + + HL HRL
Sbjct: 275 LPARHDGVRRQLQRLGRPSHEHHLPHRL 192
Score = 96.8 bits (205), Expect(2) = 6e-056
Identities = 36/49 (73%), Positives = 46/49 (93%)
Frame = -2 / +3
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+CQAML+FA +HGITA+VEV+ MDYVNTA++RL +NDVRYRFV+D+AGS
Sbjct: 309 DCQAMLEFAAKHGITAEVEVIKMDYVNTALERLAKNDVRYRFVIDIAGS 455
Score = 87.7 bits (185), Expect(2) = 4e-031
Identities = 41/77 (53%), Positives = 46/77 (59%)
Frame = +1 / -2
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRNXXX 585
AG+ SGLVG PT TI PIG ++SG G ADTVS PS VP AA ICSGSRLTRN
Sbjct: 250 AGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLTRNSSA 71
Query: 586 XXXXXXXXXXXXDVLMT 636
+VL+T
Sbjct: 70 PSRSSASSRFPGEVLIT 20
Score = 66.6 bits (139), Expect(2) = 4e-031
Identities = 33/49 (67%), Positives = 35/49 (71%)
Frame = +1 / -2
Query: 202 LPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
LPA S TKR TSF + R AVLT*SI TSTSAV+PC A SSMAW S
Sbjct: 454 LPAMSMTKR*RTSFFASRSSAVLT*SIFITSTSAVMPCFAANSSMAWQS 308
>gb|BJ454765.1|BJ454765 BJ454765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14l05 3', mRNA sequence
Length = 554
Score = 140 bits (301), Expect(2) = 6e-056
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -2 / -3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS GKR+EAL RLGAD FLVSRDPEQM+AA GT+DG++DTVSA HP+ PL L+KPM
Sbjct: 534 VISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPM 355
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
GQMV VG PTKPL++PA+++
Sbjct: 354 GQMVFVGGPTKPLELPAYAI 295
Score = 105 bits (223), Expect = 3e-022
Identities = 47/88 (53%), Positives = 59/88 (67%)
Frame = +3 / +1
Query: 201 AARDVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTPGHA 380
AARDVD+EAV D+V L+ +DVVH LH+RGD VL + +HGLA+PDAA PG A
Sbjct: 100 AARDVDDEAVADVVLREPLERRVDVVHLYHLHLRGDAVLCREFQHGLAVPDAADAVPGDA 279
Query: 381 LPAGDEAEGRHLERLGGQADDDHLAHRL 464
LPA + R L+RLG + + HL HRL
Sbjct: 280 LPARHDGVRRQLQRLGRPSHEHHLPHRL 363
Score = 96.8 bits (205), Expect(2) = 6e-056
Identities = 36/49 (73%), Positives = 46/49 (93%)
Frame = -2 / -3
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+CQAML+FA +HGITA+VEV+ MDYVNTA++RL +NDVRYRFV+D+AGS
Sbjct: 246 DCQAMLEFAAKHGITAEVEVIKMDYVNTALERLAKNDVRYRFVIDIAGS 100
Score = 87.7 bits (185), Expect(2) = 4e-031
Identities = 41/77 (53%), Positives = 46/77 (59%)
Frame = +1 / +2
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRNXXX 585
AG+ SGLVG PT TI PIG ++SG G ADTVS PS VP AA ICSGSRLTRN
Sbjct: 305 AGSSSGLVGPPTNTICPIGFISANSGEIGCHADTVSRMPSMVPTAACICSGSRLTRNSSA 484
Query: 586 XXXXXXXXXXXXDVLMT 636
+VL+T
Sbjct: 485 PSRSSASSRFPGEVLIT 535
Score = 66.6 bits (139), Expect(2) = 4e-031
Identities = 33/49 (67%), Positives = 35/49 (71%)
Frame = +1 / +2
Query: 202 LPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
LPA S TKR TSF + R AVLT*SI TSTSAV+PC A SSMAW S
Sbjct: 101 LPAMSMTKR*RTSFFASRSSAVLT*SIFITSTSAVMPCFAANSSMAWQS 247
>gb|CA001190.1|CA001190 HS05A02u HS Hordeum vulgare subsp. vulgare cDNA clone HS05A02
3-PRIME, mRNA sequence
Length = 513
Score = 209 bits (450), Expect = 2e-053
Identities = 84/126 (66%), Positives = 105/126 (83%)
Frame = -2 / -2
Query: 569 VSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXX 390
VS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPMGQMVVVG P++PL +PA+++
Sbjct: 512 VSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPMGQMVVVGAPSEPLALPAYAIIG 333
Query: 389 XXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDV 210
+CQAMLDFAG+HGITADVEVV MDYVNTA++RLE+NDVRYRFV+DV
Sbjct: 332 GGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDV 153
Query: 209 AGSKIG 192
AGS++G
Sbjct: 152 AGSQLG 135
Score = 100 bits (213), Expect = 8e-021
Identities = 47/91 (51%), Positives = 58/91 (63%)
Frame = +3 / +3
Query: 192 SNLAARDVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTP 371
+ LAA DVD+EAVP +V L LD +DVVH DDL +RGD VL +V+H LA+ AA P
Sbjct: 135 AQLAAGDVDDEAVPHVVLLQPLDRRVDVVHLDDLDVRGDAVLPREVQHRLAVAHAAHAVP 314
Query: 372 GHALPAGDEAEGRHLERLGGQADDDHLAHRL 464
G AL A D+ G + L +AD HL HRL
Sbjct: 315 GQALAASDDGVGWQRQGLARRADHHHLPHRL 407
Score = 87.2 bits (184), Expect(2) = 9e-035
Identities = 40/52 (76%), Positives = 42/52 (80%)
Frame = +1 / +1
Query: 193 PILLPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
P LPATS TKRYLTSF S R AVLT*SI TTSTSAV+PC PAKSS+AW S
Sbjct: 136 PSWLPATSMTKRYLTSFFSSRSTAVLT*SILTTSTSAVMPCFPAKSSIAWQS 291
Score = 79.4 bits (167), Expect(2) = 9e-035
Identities = 37/55 (67%), Positives = 40/55 (72%)
Frame = +1 / +1
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLT 570
AG+ G +G PTTTI PIG SSSGT+G ADTVSM PS VPAAA ICS S LT
Sbjct: 349 AGSARGSLGAPTTTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLT 513
>gb|BI947283.1|BI947283 HVSMEl0005A06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005A06f, mRNA sequence
Length = 994
Score = 117 bits (251), Expect(2) = 9e-051
Identities = 50/64 (78%), Positives = 59/64 (92%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPM
Sbjct: 198 VISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPM 377
Query: 455 GQMV 444
GQMV
Sbjct: 378 GQMV 389
Score = 102 bits (217), Expect(2) = 9e-051
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = -2 / +2
Query: 443 VVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNT 264
VVG P++PL +PA+++ +CQAMLDFAG+HGITADVEV DY+NT
Sbjct: 389 VVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVFKKDYLNT 568
Query: 263 AIQRLERNDVRYRFVVDVAGSKI 195
A++RLE ND+RYRF+ + + I
Sbjct: 569 AVERLENNDLRYRFLXQLCPAAI 637
Score = 74.4 bits (156), Expect(2) = 8e-028
Identities = 37/72 (51%), Positives = 40/72 (55%)
Frame = +1 / -1
Query: 421 GLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRNXXXXXXXX 600
GL R TI PIG SSSGT+G ADTVSM PS VPAAA ICS S LT+N
Sbjct: 412 GLARRADHTICPIGFISSSSGTSGCPADTVSMMPSIVPAAAFICSASWLTKNASAPRRSS 233
Query: 601 XXXXXXXDVLMT 636
D L+T
Sbjct: 232 ASSRFLGDELIT 197
Score = 68.9 bits (144), Expect(2) = 8e-028
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +3 / -1
Query: 213 VDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTPGHALPAG 392
+ +AVP +V L LD G++VV +DL +RGD VL +V+H LA+ AA PG AL A
Sbjct: 619 LXKKAVPQVVILQPLDRGVEVVLFEDLDVRGDAVLPREVQHRLAVAHAAHAVPGQALAAS 440
Query: 393 DEAEGRHLERLGGQAD 440
D+ G + L +AD
Sbjct: 439 DDGVGWQRQGLARRAD 392
>gb|BG310264.2|BG310264 HVSMEc0016L11f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016L11f, mRNA sequence
Length = 758
Score = 196 bits (422), Expect = 1e-049
Identities = 78/125 (62%), Positives = 102/125 (81%)
Frame = -2 / -1
Query: 566 SRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXX 387
+R P Q++A+AGT+ G+I+TVSA HP+VPLL+L+KPMGQMVVVG P++PL +PA+++
Sbjct: 725 ARTPNQIKASAGTMYGIINTVSAGHPLVPLLELIKPMGQMVVVGAPSEPLALPAYAIIGG 546
Query: 386 XXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVA 207
+CQAMLDFAG+HGITADVEVV MDYVNTA++RLE+NDVRYRFV+DVA
Sbjct: 545 GKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDVA 366
Query: 206 GSKIG 192
GS++G
Sbjct: 365 GSQLG 351
Score = 87.2 bits (184), Expect(2) = 2e-029
Identities = 40/52 (76%), Positives = 42/52 (80%)
Frame = +1 / +1
Query: 193 PILLPATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
P LPATS TKRYLTSF S R AVLT*SI TTSTSAV+PC PAKSS+AW S
Sbjct: 352 PSWLPATSMTKRYLTSFFSSRSTAVLT*SILTTSTSAVMPCFPAKSSIAWQS 507
Score = 61.6 bits (128), Expect(2) = 2e-029
Identities = 30/51 (58%), Positives = 33/51 (64%)
Frame = +1 / +1
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSG 558
AG+ G +G PTTTI PIG SS GT+G ADTV M P VPA ALI G
Sbjct: 565 AGSARGSLGAPTTTICPIGFISSSRGTSGCPADTVLMMPYIVPAEALIWLG 717
>gb|BJ545538.1|BJ545538 BJ545538 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 3', mRNA sequence
Length = 634
Score = 190 bits (410), Expect = 5e-048
Identities = 77/145 (53%), Positives = 108/145 (74%)
Frame = -2 / -2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S GK+ EAL RLGADAF+VS+D ++M+AA T+DG+I+TVSA+ P+ PLL LLKP
Sbjct: 627 VISSSPGKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPN 448
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
G+M++VGLP +P++VP F+L + Q MLD A +HG+TAD+EV+ +
Sbjct: 447 GKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAE 268
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGS 201
YVNTA++RL + DVRYRFV+D+A +
Sbjct: 267 YVNTAMERLAKADVRYRFVIDIANT 193
Score = 64.3 bits (134), Expect(2) = 7e-021
Identities = 35/80 (43%), Positives = 37/80 (46%)
Frame = +1 / +2
Query: 397 RLKAGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRN 576
R K GT G GRPT I P+GLS G G ADTV M PS V AA I S S LT N
Sbjct: 389 RAKGGTSIGCSGRPTMIILPLGLSSPRRGAMGMFADTVFMMPSMVLTAAFISSASLLTTN 568
Query: 577 XXXXXXXXXXXXXXXDVLMT 636
D L+T
Sbjct: 569 ASAPSLSRASCFFPGDELIT 628
Score = 55.6 bits (115), Expect(2) = 7e-021
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +1 / +2
Query: 208 ATSTTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
A S T RYLTS L+RR +AV T S TS SAV PC A+SS++W S
Sbjct: 200 AMSMTNRYLTSALARRSIAVFTYSALITSMSAVTPCFAARSSISWVS 340
>gb|BJ544020.1|BJ544020 BJ544020 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17o14 5', mRNA sequence
Length = 572
Score = 184 bits (396), Expect = 4e-046
Identities = 73/139 (52%), Positives = 103/139 (74%)
Frame = -2 / +3
Query: 617 GKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVV 438
GK+ EAL RLGADAF+VS+D ++M+AA T+DG+I+TVSA+ P+ PLL LLKP G+M++V
Sbjct: 12 GKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPNGKMIMV 191
Query: 437 GLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAI 258
GLP +P++VP F+L + Q MLD A +HG+TAD+EV+ +YVNTA+
Sbjct: 192 GLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAM 371
Query: 257 QRLERNDVRYRFVVDVAGS 201
+RL + DVRYRFV+D+A +
Sbjct: 372 ERLAKADVRYRFVIDIANT 428
>gb|AV836836.1|AV836836 AV836836 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd27e20, mRNA
sequence
Length = 646
Score = 182 bits (391), Expect = 2e-045
Identities = 74/145 (51%), Positives = 104/145 (71%)
Frame = -2 / -2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S GK+ EAL RLGADAF+VS+D E+M+AA T+DG+I+TVSA+ P+ PLL LLKP
Sbjct: 633 VISSSPGKKQEALERLGADAFVVSKDAEEMKAAMNTMDGIINTVSANIPMAPLLGLLKPN 454
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
G+M++VGLP P+++ F+L + Q MLD A +H +TAD+EV+ +
Sbjct: 453 GKMIMVGLPENPMEISPFALVATNKTLAGSCIGGMRDTQEMLDLAAKHDVTADIEVIDAE 274
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGS 201
YVNTA++RL + DVRYRFV+D+ +
Sbjct: 273 YVNTAMERLAKADVRYRFVIDIGNT 199
>gb|BU978527.1|BU978527 HA13H23r HA Hordeum vulgare subsp. vulgare cDNA clone HA13H23
5-PRIME, mRNA sequence
Length = 476
Score = 180 bits (387), Expect = 8e-045
Identities = 79/145 (54%), Positives = 100/145 (68%)
Frame = -2 / +1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS GKR+EAL RLGADAF++S D +M+AA GT+ G+I+T SA + P L LLKP
Sbjct: 28 VISTSPGKREEALERLGADAFVLSTDAAEMKAAVGTMHGIINTASAAASLHPYLALLKPH 207
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
G+M+++G+P KPLQV AF+L E Q MLDFA EHG+ ADVEVVG
Sbjct: 208 GKMILLGIPNKPLQVSAFALIGGGKTLAGSCMASISETQEMLDFAAEHGVAADVEVVGAG 387
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGS 201
VN A++RL + DVRYRFV+DV +
Sbjct: 388 EVNKAMERLAKGDVRYRFVIDVGNT 462
Score = 79.0 bits (166), Expect(2) = 8e-022
Identities = 39/82 (47%), Positives = 49/82 (59%)
Frame = +3 / -3
Query: 210 DVDNEAVPDIVPL*ALDGGIDVVHPDDLHIRGDPVLAGKVEHGLALPDAAAGTPGHALPA 389
DVD+EAVPD+ AL + + D LH+RG +L G+VEH L L DA PG +L A
Sbjct: 453 DVDDEAVPDVALGQALHCLVHLXGADYLHVRGHAMLCGEVEHLLRLADARHAAPGQSLAA 274
Query: 390 GDEAEGRHLERLGGQADDDHLA 455
DE+E L R G A+ DHLA
Sbjct: 273 ADESECGDL*RFIGDAEQDHLA 208
Score = 44.1 bits (90), Expect(2) = 8e-022
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3 / -3
Query: 519 AVQGARRRPHLLGVAADQERVGTEAAEGLVPLAQRRAD 632
AV GA HL GV A+ ERVG + + L+PL RRAD
Sbjct: 144 AVHGAHGGLHLRGVCAEDERVGAQPLQRLLPLPGRRAD 31
>gb|BJ550107.1|BJ550107 BJ550107 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37c03 3', mRNA sequence
Length = 641
Score = 174 bits (374), Expect = 5e-043
Identities = 71/134 (52%), Positives = 95/134 (70%)
Frame = -2 / -2
Query: 602 ALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTK 423
ALGRLGADAF+VS + ++M+AA T+DG+I+TVSA+ P+ PLL LLKP G+MV+VGLP
Sbjct: 640 ALGRLGADAFVVSNNADEMKAAMSTMDGIINTVSANMPIAPLLGLLKPNGKMVMVGLPEN 461
Query: 422 PLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLER 243
+Q+P F+L E Q MLD A +HG+TAD+EV+ DYVNTA+ RL +
Sbjct: 460 SIQLPPFALVATNKTLAGSCMGGMSETQEMLDLAAKHGVTADIEVIRADYVNTAMDRLAK 281
Query: 242 NDVRYRFVVDVAGS 201
DVRYRFV+D+ +
Sbjct: 280 ADVRYRFVIDIGNT 239
Score = 65.7 bits (137), Expect(2) = 2e-023
Identities = 31/60 (51%), Positives = 34/60 (56%)
Frame = +1 / +3
Query: 397 RLKAGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAALICSGSRLTRN 576
R K G+W GRPT TI P+GLS+ G G ADTV M PS V AA I S LT N
Sbjct: 435 RAKGGSWMEFSGRPTMTILPLGLSKPRRGAMGMFADTVLMMPSMVLIAAFISSALLLTTN 614
Score = 62.9 bits (131), Expect(2) = 2e-023
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +1 / +3
Query: 214 STTKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAWHS 348
S TKRYLTS L+RR MAVLT*S TS SAV PC A+SS++W S
Sbjct: 252 SMTKRYLTSALARRSMAVLT*SARMTSMSAVTPCLAARSSISWVS 386
>gb|CB881999.1|CB881999 HM11I22w HM Hordeum vulgare subsp. vulgare cDNA clone HM11I22
3-PRIME, mRNA sequence
Length = 596
Score = 172 bits (370), Expect = 2e-042
Identities = 68/131 (51%), Positives = 96/131 (73%)
Frame = -2 / -2
Query: 593 RLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQ 414
RLGADAF+VS+D ++M+AA T+DG+I+TVSA P+ PLL LLKP G+M++VGLP +P++
Sbjct: 592 RLGADAFVVSKDADEMKAAVSTMDGIINTVSAXIPMAPLLGLLKPNGKMIMVGLPEQPIE 413
Query: 413 VPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDV 234
VP F+L + Q MLD A +HG+TAD+EV+ +YVNTA++RL + DV
Sbjct: 412 VPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADV 233
Query: 233 RYRFVVDVAGS 201
RYRFV+D+A +
Sbjct: 232 RYRFVIDIANT 200
>gb|BF254987.2|BF254987 HVSMEf0005J24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005J24f, mRNA sequence
Length = 595
Score = 163 bits (351), Expect = 7e-040
Identities = 70/111 (63%), Positives = 86/111 (77%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPM
Sbjct: 251 VISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAVHPLVPLLELMKPM 430
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGIT 303
GQMVVVG P++PL +PA+ + CQA+LDFAG+HGIT
Sbjct: 431 GQMVVVGAPSEPLALPAYPIIRCCKRLAGNGVASVRNCQAILDFAGKHGIT 583
>gb|CB879610.1|CB879610 HP02P10w HP Hordeum vulgare subsp. vulgare cDNA clone HP02P10
3-PRIME, mRNA sequence
Length = 667
Score = 161 bits (347), Expect = 2e-039
Identities = 74/145 (51%), Positives = 95/145 (65%)
Frame = -2 / -1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS K EA L AD F++S D +QM+A A +LD VIDTVSA H + P+L+LLK
Sbjct: 631 VISTSPAKEREARESLKADDFVLSTDDKQMQAMARSLDYVIDTVSAQHSLGPILELLKVN 452
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
G++V+V P KP+++P+F L E Q M+D GEHGITAD+E+V
Sbjct: 451 GKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMKETQEMMDLCGEHGITADIELVSTG 272
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGS 201
+N A+ RL RNDVRYRFVVDVAG+
Sbjct: 271 GINDALARLARNDVRYRFVVDVAGN 197
>gb|BF621349.2|BF621349 HVSMEa0006J13f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006J13f, mRNA sequence
Length = 864
Score = 84.0 bits (177), Expect(3) = 1e-035
Identities = 33/57 (57%), Positives = 46/57 (80%)
Frame = -2 / +2
Query: 566 SRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSL 396
++ P + R AAGT+DG+I TVSA HP+VPLL+LLKP +VVVG P+ PLQ+PA+++
Sbjct: 134 AKTPSK*RLAAGTMDGIIYTVSAGHPIVPLLELLKPPRALVVVGAPSTPLQLPAYAI 304
Score = 62.9 bits (131), Expect(3) = 1e-035
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = -2 / +2
Query: 344 CQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVV 216
C AMLDFA +H ITADVEVV MD VN+A+ RL+ + +RY FV+
Sbjct: 356 CHAMLDFAAKHCITADVEVVKMDSVNSAV*RLDYD*LRYPFVI 484
Score = 56.1 bits (116), Expect(3) = 6e-023
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = +1 / -1
Query: 406 AGTWSGLVGRPTTTIWPIGLSRSSSGTTGWSADTVSMTPSKVPAAAL 546
AG+ SG++G PTTT G S SS GT G ADTV M PS VPAA+L
Sbjct: 294 AGSCSGVLGAPTTTRARGGFSSSSRGTIGCPADTV*MMPSIVPAASL 154
Score = 45.5 bits (93), Expect(3) = 6e-023
Identities = 24/41 (58%), Positives = 26/41 (63%)
Frame = +1 / -1
Query: 220 TKRYLTSFLSRRWMAVLT*SIPTTSTSAVIPCSPAKSSMAW 342
T YL S R A LT SI TTSTSAV+ C AKSS+AW
Sbjct: 480 TNGYLNQS*SSR*TAELTESILTTSTSAVMQCFAAKSSIAW 358
Score = 42.8 bits (87), Expect(3) = 6e-023
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3 / -1
Query: 546 HLLGVAADQERVGTEAAEGLVPLAQRRAD 632
HLLGV ADQERVG + + L+ L +RRAD
Sbjct: 153 HLLGVLADQERVGAKPLDRLLALPRRRAD 67
Score = 40.5 bits (82), Expect(3) = 1e-035
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3 / +2
Query: 631 SARRWASGTRPSAASVPTRSWSAATPSR* 545
SARR S R S+ PTRSWSA TPS+*
Sbjct: 68 SARRRGSARRRSSGLAPTRSWSAKTPSK* 154
>gb|BJ549163.1|BJ549163 BJ549163 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24k08 5', mRNA sequence
Length = 627
Score = 149 bits (319), Expect = 2e-035
Identities = 59/119 (49%), Positives = 82/119 (68%)
Frame = -2 / +1
Query: 557 PEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXX 378
P M+AA T+DG+I+TVSA+ P+ PL LLKP G+MV+VGLP KP++VP F+L
Sbjct: 25 PTXMKAAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKT 204
Query: 377 XXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q MLD A +HG+TAD+EV+ +YVNTA++RL + DVRYRFV+D+ +
Sbjct: 205 LSGSFIGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIGNT 381
>gb|BQ753310.1|BQ753310 EBan01_SQ001_I10_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_I10 5', mRNA sequence
Length = 509
Score = 147 bits (316), Expect = 5e-035
Identities = 58/117 (49%), Positives = 82/117 (70%)
Frame = -2 / +2
Query: 551 QMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXXXX 372
+M+AA T+DG+I+TVSA+ P+ PL LLKP G+MV+VGLP KP++VP F+L
Sbjct: 2 EMKAAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLS 181
Query: 371 XXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q MLD A +HG+TAD+EV+ +YVNTA++RL + DVRYRFV+D+ +
Sbjct: 182 GSFIGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIGNT 352
>gb|CB881341.1|CB881341 HM09I05w HM Hordeum vulgare subsp. vulgare cDNA clone HM09I05
3-PRIME, mRNA sequence
Length = 621
Score = 83.5 bits (176), Expect(2) = 8e-034
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -2 / -2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR EA+ LGAD +LVS D +QM AAA +LD +IDTV HP+ P L LLK
Sbjct: 575 VISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMD 396
Query: 455 GQMVVVGLPTKPL 417
G++V++G+ +PL
Sbjct: 395 GKLVLMGVIAEPL 357
Score = 79.9 bits (168), Expect(2) = 8e-034
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = -2 / -2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKI 195
E + +L F + G+T+ +EVV MDYVN A++RLERNDVRYRFVVDVAGS +
Sbjct: 287 ETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGSNL 135
>gb|BQ660971.1|BQ660971 HM01F04w HM Hordeum vulgare subsp. vulgare cDNA clone HM01F04
3-PRIME, mRNA sequence
Length = 600
Score = 83.5 bits (176), Expect(2) = 8e-034
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -2 / -2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR EA+ LGAD +LVS D +QM AAA +LD +IDTV HP+ P L LLK
Sbjct: 554 VISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMD 375
Query: 455 GQMVVVGLPTKPL 417
G++V++G+ +PL
Sbjct: 374 GKLVLMGVIAEPL 336
Score = 79.9 bits (168), Expect(2) = 8e-034
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = -2 / -2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKI 195
E + +L F + G+T+ +EVV MDYVN A++RLERNDVRYRFVVDVAGS +
Sbjct: 266 ETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGSNL 114
>gb|BQ759606.1|BQ759606 EBpi03_SQ002_D17_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_D17 5', mRNA sequence
Length = 441
Score = 143 bits (307), Expect = 8e-034
Identities = 57/114 (50%), Positives = 79/114 (69%)
Frame = -2 / +1
Query: 542 AAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXXXXXXX 363
AA T+DG+I+TVSA+ P+ PL LLKP G+MV+VGLP KP++VP F+L
Sbjct: 1 AAMSTMDGIINTVSANIPMAPLFGLLKPNGKMVMVGLPEKPVEVPPFALVAKNKTLSGSF 180
Query: 362 XXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q MLD A +HG+TAD+EV+ +YVNTA++RL + DVRYRFV+D+ +
Sbjct: 181 IGGMSDTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIGNT 342
>gb|AV917273.1|AV917273 AV917273 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 5', mRNA sequence
Length = 546
Score = 141 bits (303), Expect = 3e-033
Identities = 61/118 (51%), Positives = 80/118 (67%)
Frame = -2 / +3
Query: 554 EQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXXX 375
+QM+A A +LD VIDTVSA H + P+L+LLK G++V+V P KP+++P+F L
Sbjct: 3 KQMQAMARSLDYVIDTVSAQHSLGPILELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTV 182
Query: 374 XXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
E Q M+D GEHGITAD+E+V D +N A+ RL RNDVRYRFVVDVAG+
Sbjct: 183 SGSMTGGMKETQEMMDLCGEHGITADIELVSTDGINDALARLARNDVRYRFVVDVAGN 356
>gb|BM368384.2|BM368384 EBed01_SQ002_P23_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_P23 5', mRNA sequence
Length = 568
Score = 140 bits (301), Expect = 6e-033
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS GKR+EAL RLGAD FLVSRDPEQM+AA GT+DG++DTVSA HP+ PL L+KPM
Sbjct: 318 VISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPM 497
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
GQMV VG PTKPL++PA+++
Sbjct: 498 GQMVFVGGPTKPLELPAYAI 557
>gb|CB878272.1|CB878272 HP07O19T HP Hordeum vulgare subsp. vulgare cDNA clone HP07O19
5-PRIME, mRNA sequence
Length = 595
Score = 140 bits (301), Expect = 6e-033
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = -2 / +1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VISTS GKR+EAL RLGAD FLVSRDPEQM+AA GT+DG++DTVSA HP+ PL L+KPM
Sbjct: 322 VISTSPGKREEALERLGADEFLVSRDPEQMQAAVGTMDGILDTVSAWHPISPLFALMKPM 501
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
GQMV VG PTKPL++PA+++
Sbjct: 502 GQMVFVGGPTKPLELPAYAI 561
>gb|BI949722.1|BI949722 HVSMEl0015I24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015I24f, mRNA sequence
Length = 561
Score = 139 bits (298), Expect = 1e-032
Identities = 56/89 (62%), Positives = 70/89 (78%)
Frame = -2 / +1
Query: 458 MGQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGM 279
MGQMVVVG P++PL +PA+++ +CQAMLDFAG+HGITADVEVV M
Sbjct: 1 MGQMVVVGAPSEPLALPAYAIIGGGKRLAGNGVGSVRDCQAMLDFAGKHGITADVEVVKM 180
Query: 278 DYVNTAIQRLERNDVRYRFVVDVAGSKIG 192
DYVNTA++RLE+NDVRYRFV+DVAGS++G
Sbjct: 181 DYVNTAVERLEKNDVRYRFVIDVAGSQLG 267
>gb|CB858813.1|CB858813 HI08G13w HI Hordeum vulgare subsp. vulgare cDNA clone HI08G13
3-PRIME, mRNA sequence
Length = 579
Score = 79.9 bits (168), Expect(2) = 4e-032
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = -2 / -3
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKI 195
E + +L F + G+T+ +EVV MDYVN A++RLERNDVRYRFVVDVAGS +
Sbjct: 310 ETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGSNL 158
Score = 78.0 bits (164), Expect(2) = 4e-032
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = -2 / -3
Query: 614 KRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVG 435
KR EA+ LGAD +LVS D +QM AAA +LD +IDTV HP+ P L LLK G++V++G
Sbjct: 577 KRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMG 398
Query: 434 LPTKPL 417
+ +PL
Sbjct: 397 VIAEPL 380
>gb|BI957762.1|BI957762 HVSMEn0011B06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011B06f, mRNA sequence
Length = 1173
Score = 124 bits (266), Expect(2) = 4e-031
Identities = 54/77 (70%), Positives = 65/77 (84%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RL ADAFLVS+D EQM+AAAGT+D +IDTVSA HP+VPLL+L+KPM
Sbjct: 197 VISSSPRKREEALERLCADAFLVSQDAEQMKAAAGTMDSIIDTVSAGHPLVPLLELMKPM 376
Query: 455 GQMVVVGLPTKPLQVPA 405
G MVVVG P +PL + A
Sbjct: 377 GHMVVVGAPNEPLALSA 427
Score = 29.5 bits (58), Expect(2) = 4e-031
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2 / +1
Query: 320 GEHGITADVEVVGMDYVNTAIQ 255
G+HG+ DV+ V MDYV Q
Sbjct: 511 GKHGVNRDVQDVKMDYVQHGCQ 576
>gb|AV922443.1|AV922443 AV922443 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18d14 3', mRNA sequence
Length = 520
Score = 133 bits (285), Expect = 9e-031
Identities = 57/109 (52%), Positives = 73/109 (66%)
Frame = -2 / -2
Query: 527 LDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXG 348
LD VIDTVSA H + P+L+LLK G++V+V P KP+++P+F L
Sbjct: 519 LDYVIDTVSAQHSLGPILELLKVNGKLVLVAAPDKPVELPSFPLIFGKRTVSGSMTGGMK 340
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
E Q M+D GEHGITAD+E+V D +N A+ RL RNDVRYRFVVDVAG+
Sbjct: 339 ETQEMMDLCGEHGITADIELVSTDGINDALARLARNDVRYRFVVDVAGN 193
>gb|BG299988.1|BG299988 HVSMEa0022N15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0022N15f, mRNA sequence
Length = 787
Score = 130 bits (278), Expect = 8e-030
Identities = 56/80 (70%), Positives = 68/80 (85%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D EQM+AAAGT+DG+IDTVSA HP+VPLL+L+KPM
Sbjct: 429 VISSSPRKREEALERLGADAFLVSQDAEQMKAAAGTMDGIIDTVSAGHPLVPLLELMKPM 608
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
GQMV V P +PL +P + L
Sbjct: 609 GQMVGVCPPNEPLALPTYPL 668
>gb|BJ548462.1|BJ548462 BJ548462 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25k20 3', mRNA sequence
Length = 600
Score = 78.0 bits (164), Expect(2) = 2e-029
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -2 / -1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q MLD A +HG+TAD+EV+ +YVNTA++RL + DVRYRFV+D+A +
Sbjct: 309 DTQEMLDLAAKHGVTADIEVISAEYVNTAMERLAKADVRYRFVIDIANT 163
Score = 72.1 bits (151), Expect(2) = 2e-029
Identities = 27/45 (60%), Positives = 39/45 (86%)
Frame = -2 / -2
Query: 530 TLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSL 396
T+DG+I+TVSA+ P+ PLL LLKP G+M++VGLP +P++VP F+L
Sbjct: 593 TMDGIINTVSANIPMAPLLGLLKPNGKMIMVGLPEQPIEVPPFAL 459
>gb|CB881629.1|CB881629 HM10G11w HM Hordeum vulgare subsp. vulgare cDNA clone HM10G11
3-PRIME, mRNA sequence
Length = 524
Score = 79.9 bits (168), Expect(2) = 9e-029
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = -2 / -1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKI 195
E + +L F + G+T+ +EVV MDYVN A++RLERNDVRYRFVVDVAGS +
Sbjct: 287 ETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGSNL 135
Score = 66.6 bits (139), Expect(2) = 9e-029
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = -2 / -1
Query: 584 ADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPL 417
AD +LVS D +QM AAA +LD +IDTV HP+ P L LLK G++V++G+ +PL
Sbjct: 524 ADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIAEPL 357
>gb|BI956379.1|BI956379 HVSMEn0003A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003A09f, mRNA sequence
Length = 482
Score = 125 bits (268), Expect = 2e-028
Identities = 53/72 (73%), Positives = 63/72 (87%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EA+ RLGADAFLVS+DPEQM+AAAGT+DG+IDTVSA HP+VPLL+LLKP
Sbjct: 6 VISSSPRKREEAVKRLGADAFLVSQDPEQMKAAAGTMDGIIDTVSAGHPIVPLLELLKPX 185
Query: 455 GQMVVVGLPTKP 420
GQ+VVVG P
Sbjct: 186 GQLVVVGXXXAP 221
>gb|BI957127.1|BI957127 HVSMEn0007J20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007J20f, mRNA sequence
Length = 876
Score = 83.5 bits (176), Expect(2) = 2e-028
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR EA+ LGAD +LVS D +QM AAA +LD +IDTV HP+ P L LLK
Sbjct: 35 VISSSNRKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMD 214
Query: 455 GQMVVVGLPTKPL 417
G++V++G+ +PL
Sbjct: 215 GKLVLMGVIAEPL 253
Score = 61.6 bits (128), Expect(2) = 2e-028
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = -2 / +2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDV 210
E + +L F + G+T+ + VV MDYVN A++RLERNDVRYRF V V
Sbjct: 323 ETEEVLKFCVDKGLTSQIYVVKMDYVNHALERLERNDVRYRFGVYV 460
>gb|BQ768475.1|BQ768475 EBro08_SQ011_G19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_G19 5', mRNA sequence
Length = 421
Score = 92.7 bits (196), Expect(2) = 6e-028
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = -2 / +1
Query: 542 AAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSL 396
AAAGT+DG+IDTVSA HP+VPLL+L+KPMGQMVVVG P++PL +PA+++
Sbjct: 220 AAAGTMDGIIDTVSAGHPLVPLLELMKPMGQMVVVGAPSEPLALPAYAI 366
Score = 51.0 bits (105), Expect(2) = 6e-028
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMR 543
VIS+S KR+EAL RLGADAFLVS+D EQM+
Sbjct: 32 VISSSPRKREEALERLGADAFLVSQDAEQMK 124
>gb|BJ456704.1|BJ456704 BJ456704 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23a07 3', mRNA sequence
Length = 674
Score = 84.0 bits (177), Expect(2) = 8e-028
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -2 / -1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
V+STS KRDEA+ LGAD F+VS D +QM + +LD ++DT S DHP P L LLK
Sbjct: 548 VLSTSESKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVG 369
Query: 455 GQMVVVGLP 429
G M +VG P
Sbjct: 368 GLMALVGFP 342
Score = 59.3 bits (123), Expect(2) = 8e-028
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = -2 / -1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q M++F + I D+E++ +DY+N A++RL DVRYRFV+D+ S
Sbjct: 263 DTQEMINFCAANKIYPDIELIKIDYINQALERLVNRDVRYRFVIDIESS 117
>gb|BU999880.1|BU999880 HS17B20u HS Hordeum vulgare subsp. vulgare cDNA clone HS17B20
3-PRIME, mRNA sequence
Length = 545
Score = 84.0 bits (177), Expect(2) = 8e-028
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -2 / -1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
V+STS KRDEA+ LGAD F+VS D +QM + +LD ++DT S DHP P L LLK
Sbjct: 545 VLSTSESKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVG 366
Query: 455 GQMVVVGLP 429
G M +VG P
Sbjct: 365 GLMALVGFP 339
Score = 59.3 bits (123), Expect(2) = 8e-028
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = -2 / -1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q M++F + I D+E++ +DY+N A++RL DVRYRFV+D+ S
Sbjct: 260 DTQEMINFCAANKIYPDIELIKIDYINQALERLVNRDVRYRFVIDIESS 114
>gb|BU977918.1|BU977918 HA12E09u HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
3-PRIME, mRNA sequence
Length = 497
Score = 122 bits (260), Expect = 2e-027
Identities = 47/97 (48%), Positives = 67/97 (69%)
Frame = -2 / -3
Query: 491 PVVPLLDLLKPMGQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEH 312
P+ PLL LLKP G+M++VGLP +P++VP F+L + Q MLD A +H
Sbjct: 489 PMAPLLGLLKPNGKMIMVGLPEQPIEVPPFALVARNKTLAGSCIGGMRDTQEMLDLAAKH 310
Query: 311 GITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
G+TAD+EV+ +YVNTA++RL + DVRYRFV+D+A +
Sbjct: 309 GVTADIEVISAEYVNTAMERLAKADVRYRFVIDIANT 199
>gb|AV931399.1|AV931399 AV931399 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd19k10 3', mRNA sequence
Length = 683
Score = 84.0 bits (177), Expect(2) = 3e-027
Identities = 37/69 (53%), Positives = 46/69 (66%)
Frame = -2 / -2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
V+STS KRDEA+ LGAD F+VS D +QM + +LD ++DT S DHP P L LLK
Sbjct: 514 VLSTSESKRDEAINLLGADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVG 335
Query: 455 GQMVVVGLP 429
G M +VG P
Sbjct: 334 GLMALVGFP 308
Score = 57.4 bits (119), Expect(2) = 3e-027
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = -2 / -2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q M++F + I D+E++ +DY+N A++RL DV+YRFV+D+ S
Sbjct: 229 DTQEMINFCAVNKIYPDIELIKIDYINEALERLVNRDVKYRFVIDIESS 83
>gb|BU977917.1|BU977917 HA12E09r HA Hordeum vulgare subsp. vulgare cDNA clone HA12E09
5-PRIME, mRNA sequence
Length = 573
Score = 121 bits (259), Expect = 3e-027
Identities = 49/80 (61%), Positives = 68/80 (85%)
Frame = -2 / +3
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S GK+ EAL RLGADAF+VS+D ++M+AA T+DG+I+TVSA+ P+ PLL LLKP
Sbjct: 270 VISSSPGKKQEALERLGADAFVVSKDADEMKAAVSTMDGIINTVSANIPMAPLLGLLKPN 449
Query: 455 GQMVVVGLPTKPLQVPAFSL 396
G+M++VGLP +P++VP F+L
Sbjct: 450 GKMIMVGLPEQPIEVPPFAL 509
>emb|X92754.1|HVCADMRNA H.vulgare mRNA for cinnamyl alcohol dehydrogenase
Length = 458
Score = 78.0 bits (164), Expect(2) = 7e-027
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = -2 / +1
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR EAL LGAD +LVS D +M+ A +LD +IDTV HP+ P L LL+
Sbjct: 46 VISSSDKKRQEALEHLGADDYLVSSDSTRMQEVADSLDYIIDTVPVFHPLEPYLSLLRLD 225
Query: 455 GQMVVVGLPTKPLQ 414
G+++++G+ PLQ
Sbjct: 226 GKLILMGVINTPLQ 267
Score = 62.0 bits (129), Expect(2) = 7e-027
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = -2 / +1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYR 225
E + ML+F E G+++ +EVV MDYVN A++RLE+NDVRYR
Sbjct: 334 ETEEMLEFCKEKGLSSMIEVVKMDYVNKALERLEKNDVRYR 456
>gb|BF255211.2|BF255211 HVSMEf0006E02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006E02f, mRNA sequence
Length = 602
Score = 119 bits (254), Expect = 2e-026
Identities = 50/72 (69%), Positives = 61/72 (84%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR+EAL RLGADAFLVS+D E M AAA T+DG+IDTVSA HP+VPL++L+KP+
Sbjct: 323 VISSSPRKREEALERLGADAFLVSQDAEHMNAAAATMDGIIDTVSAGHPLVPLMELMKPI 502
Query: 455 GQMVVVGLPTKP 420
GQMVVV P+ P
Sbjct: 503 GQMVVVSAPSNP 538
>gb|BI957446.1|BI957446 HVSMEn0009J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009J16f, mRNA sequence
Length = 646
Score = 83.5 bits (176), Expect(2) = 2e-026
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = -2 / +2
Query: 635 VISTSLGKRDEALGRLGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPM 456
VIS+S KR EA+ LGAD +LVS D +QM AAA +LD +IDTV HP+ P L LLK
Sbjct: 239 VISSSNKKRAEAVDDLGADEYLVSSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMD 418
Query: 455 GQMVVVGLPTKPL 417
G++V++G+ +PL
Sbjct: 419 GKLVLMGVIAEPL 457
Score = 55.1 bits (114), Expect(2) = 2e-026
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = -2 / +2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVR 231
E + +L F + G+T+ +EVV MDYVN A+++LERNDVR
Sbjct: 527 ETEEVLKFCVDKGLTSQIEVVKMDYVNXALEKLERNDVR 643
>gb|AV921205.1|AV921205 AV921205 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1g09 3', mRNA sequence
Length = 550
Score = 118 bits (252), Expect = 3e-026
Identities = 55/88 (62%), Positives = 66/88 (75%)
Frame = -2 / -3
Query: 455 GQMVVVGLPTKPLQVPAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMD 276
G MVVVG + L A ++ +CQAMLDFAG+HGITADVEVV MD
Sbjct: 536 GXMVVVGXXXEXLXXXAXAIIXXGKRLXGNGVXSVRDCQAMLDFAGKHGITADVEVVKMD 357
Query: 275 YVNTAIQRLERNDVRYRFVVDVAGSKIG 192
YVNTA++RLE+NDVRYRFV+DVAGS++G
Sbjct: 356 YVNTAVERLEKNDVRYRFVIDVAGSQLG 273
>gb|BQ661428.1|BQ661428 HM03H06u HM Hordeum vulgare subsp. vulgare cDNA clone HM03H06
3-PRIME, mRNA sequence
Length = 486
Score = 79.9 bits (168), Expect(2) = 5e-026
Identities = 32/51 (62%), Positives = 41/51 (80%)
Frame = -2 / -2
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKI 195
E + +L F + G+T+ +EVV MDYVN A++RLERNDVRYRFVVDVAGS +
Sbjct: 266 ETEEVLKFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGSNL 114
Score = 57.4 bits (119), Expect(2) = 5e-026
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = -2 / -2
Query: 566 SRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPL 417
S D +QM AAA +LD +IDTV HP+ P L LLK G++V++G+ +PL
Sbjct: 485 SSDADQMAAAADSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIAEPL 336
>gb|BJ459370.1|BJ459370 BJ459370 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak36m01 3', mRNA sequence
Length = 222
Score = 111 bits (238), Expect = 3e-024
Identities = 44/65 (67%), Positives = 55/65 (84%)
Frame = -2 / -3
Query: 590 LGADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLPTKPLQV 411
LGA FLVSRDPEQM+A GT+DG++DTVSA HP+ PL L+KPMGQMV VG PTKPL++
Sbjct: 220 LGAXEFLVSRDPEQMQATVGTMDGILDTVSAWHPISPLFALMKPMGQMVFVGGPTKPLEL 41
Query: 410 PAFSL 396
PA+++
Sbjct: 40 PAYAI 26
>gb|AV913778.1|AV913778 AV913778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 5', mRNA sequence
Length = 497
Score = 110 bits (235), Expect = 7e-024
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -2 / +2
Query: 410 PAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVR 231
PA+++ G CQAMLDFA +HGITADVEVV MDYVNTA++RLERNDVR
Sbjct: 20 PAYAIIGGGKRVAGNLVGSVGSCQAMLDFAAKHGITADVEVVKMDYVNTAVERLERNDVR 199
Query: 230 YRFVVDVAGSKIG 192
YRFV+DVAGS++G
Sbjct: 200 YRFVIDVAGSQLG 238
>gb|AV921385.1|AV921385 AV921385 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23e03 3', mRNA sequence
Length = 573
Score = 110 bits (235), Expect = 7e-024
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -2 / -2
Query: 410 PAFSLXXXXXXXXXXXXXXXGECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVR 231
PA+++ G CQAMLDFA +HGITADVEVV MDYVNTA++RLERNDVR
Sbjct: 572 PAYAIIGGGKRVAGNLVGSVGSCQAMLDFAAKHGITADVEVVKMDYVNTAVERLERNDVR 393
Query: 230 YRFVVDVAGSKIG 192
YRFV+DVAGS++G
Sbjct: 392 YRFVIDVAGSQLG 354
>gb|BQ467844.1|BQ467844 HR01B18r HR Hordeum vulgare subsp. vulgare cDNA clone HR01B18
5-PRIME, mRNA sequence
Length = 480
Score = 107 bits (228), Expect = 6e-023
Identities = 43/52 (82%), Positives = 50/52 (96%)
Frame = -2 / +1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGSKIG 192
E QAMLDFAG+HGITADVEVV MDYVNTA++RLE+NDVRYRFV+DVAGS++G
Sbjct: 7 EGQAMLDFAGKHGITADVEVVKMDYVNTAVERLEKNDVRYRFVIDVAGSQLG 162
>gb|AL509755.1|AL509755 AL509755 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY02M11u 3',
mRNA sequence
Length = 695
Score = 63.4 bits (132), Expect(2) = 1e-021
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = -2 / -1
Query: 587 GADAFLVSRDPEQMRAAAGTLDGVIDTVSADHPVVPLLDLLKPMGQMVVVGLP 429
GAD F+VS D +QM + +LD ++DT S DHP P L LLK G M +VG P
Sbjct: 530 GADNFVVSSDKKQMESLKSSLDFIVDTASGDHPFDPYLALLKVGGLMALVGFP 372
Score = 59.3 bits (123), Expect(2) = 1e-021
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = -2 / -1
Query: 347 ECQAMLDFAGEHGITADVEVVGMDYVNTAIQRLERNDVRYRFVVDVAGS 201
+ Q M++F + I D+E++ +DY+N A++RL DVRYRFV+D+ S
Sbjct: 293 DTQEMINFCAANKIYPDIELIKIDYINQALERLVNRDVRYRFVIDIESS 147
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 275,592,009
Number of Sequences: 312970
Number of extensions: 4578874
Number of successful extensions: 117124
Number of sequences better than 1.0e-020: 69
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6786673440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)