TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI958381.1|BI958381 HVSMEn0014L08f Hordeum vulgare rachi... 109 3e-027
gb|AJ436584.1|AJ436584 AJ436584 S00002 Hordeum vulgare subs... 109 1e-026
gb|BQ765283.1|BQ765283 EBro03_SQ006_A20_R root, 3 week, wat... 109 1e-026
gb|BM373018.2|BM373018 EBma04_SQ002_M04_R maternal, 10 DPA,... 109 1e-026
gb|BM100853.2|BM100853 EBpi01_SQ002_D01_R pistil, 1 DPA, no... 109 1e-026
gb|BM100865.2|BM100865 EBpi01_SQ002_D15_R pistil, 1 DPA, no... 109 1e-026
gb|BM100577.2|BM100577 EBma01_SQ005_K04_R maternal, 4 DPA, ... 109 1e-026
gb|BQ764803.1|BQ764803 EBca01_SQ004_O22_R carpel, pre-anthe... 109 1e-026
gb|BQ761886.1|BQ761886 EBpi01_SQ005_M05_R pistil, 1 DPA, no... 109 1e-026
gb|BM101328.2|BM101328 EBpi01_SQ003_I17_R pistil, 1 DPA, no... 109 1e-026
gb|BE456005.3|BE456005 HVSMEg0019D20f Hordeum vulgare pre-a... 109 5e-026
gb|CA024533.1|CA024533 HZ49J05r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|AL507675.1|AL507675 AL507675 Hordeum vulgare Barke devel... 109 5e-026
gb|CA021107.1|CA021107 HZ39C03r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|CA020390.1|CA020390 HZ36C12r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|CB876023.1|CB876023 HX10A22w HX Hordeum vulgare subsp. v... 109 5e-026
gb|CA032223.1|CA032223 HX12G08r HX Hordeum vulgare subsp. v... 109 5e-026
gb|BU998195.1|BU998195 HI10E15r HI Hordeum vulgare subsp. v... 109 5e-026
gb|CA032116.1|CA032116 HX12B02r HX Hordeum vulgare subsp. v... 109 5e-026
gb|CA005817.1|CA005817 HU08K17u HU Hordeum vulgare subsp. v... 109 5e-026
gb|CB876529.1|CB876529 HX11J01w HX Hordeum vulgare subsp. v... 109 5e-026
gb|CA031942.1|CA031942 HX11J01r HX Hordeum vulgare subsp. v... 109 5e-026
gb|CB859380.1|CB859380 HI10E15w HI Hordeum vulgare subsp. v... 109 5e-026
gb|CA024286.1|CA024286 HZ48O03r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|BU989449.1|BU989449 HF21M08r HF Hordeum vulgare subsp. v... 109 5e-026
gb|CA025799.1|CA025799 HZ53C22r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|BQ470689.1|BQ470689 HX03L16r HX Hordeum vulgare subsp. v... 109 5e-026
gb|CA024986.1|CA024986 HZ50O09r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|AL505735.1|AL505735 AL505735 Hordeum vulgare Barke roots... 109 5e-026
gb|CA003405.1|CA003405 HS14F13r HS Hordeum vulgare subsp. v... 109 5e-026
gb|CA024087.1|CA024087 HZ48F06r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|BU967751.1|BU967751 HB05E17r BC Hordeum vulgare subsp. v... 109 5e-026
gb|CA021876.1|CA021876 HZ41G17r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|CA024227.1|CA024227 HZ48L14r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|CA026240.1|CA026240 HZ55F09r HZ Hordeum vulgare subsp. v... 109 5e-026
gb|AL510956.1|AL510956 AL510956 Hordeum vulgare Barke devel... 106 2e-025
gb|BG342887.2|BG342887 HVSMEg0001C01f Hordeum vulgare pre-a... 107 3e-025
gb|CA021077.1|CA021077 HZ39A16r HZ Hordeum vulgare subsp. v... 105 6e-025
gb|BJ464544.1|BJ464544 BJ464544 K. Sato unpublished cDNA li... 113 8e-025
gb|BF629069.2|BF629069 HVSMEb0009M06f Hordeum vulgare seedl... 113 1e-024
gb|BE231073.2|BE231073 HVSMEg0016F11f Hordeum vulgare pre-a... 113 1e-024
gb|BG344662.2|BG344662 HVSMEg0009P10f Hordeum vulgare pre-a... 113 1e-024
gb|AW983351.3|AW983351 HVSMEg0010F06f Hordeum vulgare pre-a... 113 1e-024
gb|BJ453363.1|BJ453363 BJ453363 K. Sato unpublished cDNA li... 113 1e-024
gb|BJ460908.1|BJ460908 BJ460908 K. Sato unpublished cDNA li... 113 1e-024
gb|BJ466896.1|BJ466896 BJ466896 K. Sato unpublished cDNA li... 113 1e-024
gb|BQ470043.1|BQ470043 HX01J18T HX Hordeum vulgare subsp. v... 113 1e-024
gb|BQ664970.1|BQ664970 HX01J18w HX Hordeum vulgare subsp. v... 113 1e-024
gb|BM100389.2|BM100389 EBma01_SQ005_B05_R maternal, 4 DPA, ... 113 1e-024
gb|BQ757010.1|BQ757010 EBem10_SQ002_I03_R embryo, 2 Day ger... 113 1e-024
gb|BU994236.1|BU994236 HM06E11r HM Hordeum vulgare subsp. v... 113 1e-024
gb|BU995398.1|BU995398 HM10C07r HM Hordeum vulgare subsp. v... 113 1e-024
gb|CA032981.1|CA032981 HX14M06r HX Hordeum vulgare subsp. v... 113 1e-024
gb|CB880350.1|CB880350 HM06E11w HM Hordeum vulgare subsp. v... 113 1e-024
gb|CB881547.1|CB881547 HM10C07w HM Hordeum vulgare subsp. v... 113 1e-024
gb|BI957750.1|BI957750 HVSMEn0011A06f Hordeum vulgare rachi... 105 3e-024
gb|BU984028.1|BU984028 HA31M10r HA Hordeum vulgare subsp. v... 98 8e-024
gb|BQ754272.1|BQ754272 EBca01_SQ003_G10_R carpel, pre-anthe... 100 9e-024
gb|BG343826.2|BG343826 HVSMEg0006N18f Hordeum vulgare pre-a... 109 1e-023
gb|BU986448.1|BU986448 HF11O09r HF Hordeum vulgare subsp. v... 109 1e-023
gb|BU999151.1|BU999151 HI13G21r HI Hordeum vulgare subsp. v... 109 1e-023
gb|CA031724.1|CA031724 HX10P03r HX Hordeum vulgare subsp. v... 109 1e-023
gb|BU977431.1|BU977431 HA11G17r HA Hordeum vulgare subsp. v... 98 3e-023
gb|BU977432.1|BU977432 HA11G17u HA Hordeum vulgare subsp. v... 98 3e-023
gb|CA021624.1|CA021624 HZ40K01r HZ Hordeum vulgare subsp. v... 107 7e-023
gb|CK124372.1|CK124372 BES1824108i15 BES1824 Hordeum vulgar... 98 7e-023
gb|BG414807.2|BG414807 HVSMEk0003M19f Hordeum vulgare testa... 100 2e-022
gb|AV925290.1|AV925290 AV925290 K. Sato unpublished cDNA li... 100 2e-022
gb|AV930444.1|AV930444 AV930444 K. Sato unpublished cDNA li... 100 2e-022
gb|BQ460125.1|BQ460125 HA07C10r HA Hordeum vulgare subsp. v... 98 2e-022
gb|BU978673.1|BU978673 HA13P05r HA Hordeum vulgare subsp. v... 98 2e-022
gb|CK122981.1|CK122981 BES1824101k07 BES1824 Hordeum vulgar... 98 2e-022
gb|CK123606.1|CK123606 BES1824104l05 BES1824 Hordeum vulgar... 98 2e-022
gb|BE194075.3|BE194075 HVSMEh0083N15f Hordeum vulgare 5-45 ... 100 2e-022
gb|BE194162.2|BE194162 HVSMEh0084F17f Hordeum vulgare 5-45 ... 100 2e-022
gb|BU976895.1|BU976895 HA10H22u HA Hordeum vulgare subsp. v... 98 2e-022
gb|BU982677.1|BU982677 HA27E12r HA Hordeum vulgare subsp. v... 98 2e-022
gb|BU983682.1|BU983682 HA30K06r HA Hordeum vulgare subsp. v... 98 2e-022
gb|BI776654.2|BI776654 EBpi07_SQ001_E15_R pistil, 12 DPA, n... 100 2e-022
gb|BQ460484.1|BQ460484 HA09G20r HA Hordeum vulgare subsp. v... 98 2e-022
gb|BU984085.1|BU984085 HA31P03r HA Hordeum vulgare subsp. v... 98 2e-022
gb|CA020870.1|CA020870 HZ38C17r HZ Hordeum vulgare subsp. v... 98 2e-022
gb|BU976894.1|BU976894 HA10H22r HA Hordeum vulgare subsp. v... 98 2e-022
gb|CA020846.1|CA020846 HZ38A15r HZ Hordeum vulgare subsp. v... 98 2e-022
gb|BG417109.2|BG417109 HVSMEk0016F02f Hordeum vulgare testa... 100 2e-022
gb|BU990341.1|BU990341 HF24L23r HF Hordeum vulgare subsp. v... 98 2e-022
gb|BM101443.2|BM101443 EBpi01_SQ003_N21_R pistil, 1 DPA, no... 100 2e-022
gb|CA023557.1|CA023557 HZ46K07r HZ Hordeum vulgare subsp. v... 98 2e-022
gb|CA024265.1|CA024265 HZ48N06r HZ Hordeum vulgare subsp. v... 98 2e-022
gb|BI780562.2|BI780562 EBes01_SQ001_D19_R embryo sac, 4-6 D... 100 2e-022
gb|BU982830.1|BU982830 HA27L20r HA Hordeum vulgare subsp. v... 98 2e-022
gb|AL509014.1|AL509014 AL509014 Hordeum vulgare Barke devel... 105 2e-022
gb|CK122605.1|CK122605 BES1824104j18 BES1824 Hordeum vulgar... 96 8e-022
gb|BM372843.2|BM372843 EBma04_SQ002_B24_R maternal, 10 DPA,... 98 1e-021
gb|BM101377.2|BM101377 EBpi01_SQ003_K20_R pistil, 1 DPA, no... 103 1e-021
gb|BQ458414.1|BQ458414 HA05E20r HA Hordeum vulgare subsp. v... 95 2e-021
gb|BF626646.2|BF626646 HVSMEa0018P22f Hordeum vulgare seedl... 101 3e-021
>gb|BI958381.1|BI958381 HVSMEn0014L08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014L08f, mRNA sequence
Length = 526
Score = 109 bits (233), Expect(3) = 3e-027
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 152 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 322
Score = 27.6 bits (54), Expect(3) = 3e-027
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 62 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 166
Score = 23.5 bits (45), Expect(3) = 3e-027
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 48 **CNRSFFQKKKKK 7
**CN+ QKKKKK
Sbjct: 484 **CNKVVVQKKKKK 525
>gb|AJ436584.1|AJ436584 AJ436584 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200070G08F1, mRNA sequence
Length = 618
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 163 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 333
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 73 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 177
>gb|BQ765283.1|BQ765283 EBro03_SQ006_A20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ006_A20 5', mRNA sequence
Length = 594
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 163 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 333
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 73 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 177
>gb|BM373018.2|BM373018 EBma04_SQ002_M04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_M04 5', mRNA sequence
Length = 592
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 159 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 329
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 69 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 173
>gb|BM100853.2|BM100853 EBpi01_SQ002_D01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_D01 5', mRNA sequence
Length = 514
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 171 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 341
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 81 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 185
>gb|BM100865.2|BM100865 EBpi01_SQ002_D15_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_D15 5', mRNA sequence
Length = 510
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 153 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 323
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 63 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 167
>gb|BM100577.2|BM100577 EBma01_SQ005_K04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_K04 5', mRNA sequence
Length = 503
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 177 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 347
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 87 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 191
>gb|BQ764803.1|BQ764803 EBca01_SQ004_O22_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_O22 5', mRNA sequence
Length = 501
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 159 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 329
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 69 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 173
>gb|BQ761886.1|BQ761886 EBpi01_SQ005_M05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ005_M05 5', mRNA sequence
Length = 487
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 131 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 301
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 41 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 145
>gb|BM101328.2|BM101328 EBpi01_SQ003_I17_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_I17 5', mRNA sequence
Length = 480
Score = 109 bits (233), Expect(2) = 1e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 152 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 322
Score = 29.5 bits (58), Expect(2) = 1e-026
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMAA VATE+G T V A
Sbjct: 62 PSRSMAQSRRMAASALLLLVLLVATEMGATTVKVA 166
>gb|BE456005.3|BE456005 HVSMEg0019D20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019D20f, mRNA sequence
Length = 614
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 158 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 328
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 68 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 172
>gb|CA024533.1|CA024533 HZ49J05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49J05
5-PRIME, mRNA sequence
Length = 612
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 179 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 349
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 89 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 193
>gb|AL507675.1|AL507675 AL507675 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06I14V 5',
mRNA sequence
Length = 606
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / -1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 459 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 289
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / -1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 549 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 445
>gb|CA021107.1|CA021107 HZ39C03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39C03
5-PRIME, mRNA sequence
Length = 607
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 174 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 344
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 84 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 188
>gb|CA020390.1|CA020390 HZ36C12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36C12
5-PRIME, mRNA sequence
Length = 605
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 173 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 343
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 83 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 187
>gb|CB876023.1|CB876023 HX10A22w HX Hordeum vulgare subsp. vulgare cDNA clone HX10A22
3-PRIME, mRNA sequence
Length = 594
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / -2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 434 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 264
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / -2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 524 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 420
>gb|CA032223.1|CA032223 HX12G08r HX Hordeum vulgare subsp. vulgare cDNA clone HX12G08
5-PRIME, mRNA sequence
Length = 590
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 174 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 344
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 84 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 188
>gb|BU998195.1|BU998195 HI10E15r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E15
5-PRIME, mRNA sequence
Length = 573
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 140 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 310
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 50 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 154
>gb|CA032116.1|CA032116 HX12B02r HX Hordeum vulgare subsp. vulgare cDNA clone HX12B02
5-PRIME, mRNA sequence
Length = 573
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 140 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 310
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 50 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 154
>gb|CA005817.1|CA005817 HU08K17u HU Hordeum vulgare subsp. vulgare cDNA clone HU08K17
3-PRIME, mRNA sequence
Length = 561
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / -1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 465 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 295
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / -1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 555 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 451
>gb|CB876529.1|CB876529 HX11J01w HX Hordeum vulgare subsp. vulgare cDNA clone HX11J01
3-PRIME, mRNA sequence
Length = 562
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / -2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 417 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 247
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / -2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 507 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 403
>gb|CA031942.1|CA031942 HX11J01r HX Hordeum vulgare subsp. vulgare cDNA clone HX11J01
5-PRIME, mRNA sequence
Length = 557
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 141 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 311
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 51 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 155
>gb|CB859380.1|CB859380 HI10E15w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E15
3-PRIME, mRNA sequence
Length = 531
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / -2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 434 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 264
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / -2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 524 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 420
>gb|CA024286.1|CA024286 HZ48O03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48O03
5-PRIME, mRNA sequence
Length = 526
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 170 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 340
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 80 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 184
>gb|BU989449.1|BU989449 HF21M08r HF Hordeum vulgare subsp. vulgare cDNA clone HF21M08
5-PRIME, mRNA sequence
Length = 523
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 166 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 336
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 76 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 180
>gb|CA025799.1|CA025799 HZ53C22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53C22
5-PRIME, mRNA sequence
Length = 503
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 179 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 349
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 89 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 193
>gb|BQ470689.1|BQ470689 HX03L16r HX Hordeum vulgare subsp. vulgare cDNA clone HX03L16
5-PRIME, mRNA sequence
Length = 496
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 172 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 342
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 82 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 186
>gb|CA024986.1|CA024986 HZ50O09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50O09
5-PRIME, mRNA sequence
Length = 491
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 169 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 339
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 79 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 183
>gb|AL505735.1|AL505735 AL505735 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09F22V 5', mRNA sequence
Length = 471
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 160 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 330
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 70 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 174
>gb|CA003405.1|CA003405 HS14F13r HS Hordeum vulgare subsp. vulgare cDNA clone HS14F13
5-PRIME, mRNA sequence
Length = 459
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 168 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 338
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 78 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 182
>gb|CA024087.1|CA024087 HZ48F06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48F06
5-PRIME, mRNA sequence
Length = 453
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 159 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 329
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 69 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 173
>gb|BU967751.1|BU967751 HB05E17r BC Hordeum vulgare subsp. vulgare cDNA clone HB05E17
5-PRIME, mRNA sequence
Length = 441
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 172 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 342
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 82 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 186
>gb|CA021876.1|CA021876 HZ41G17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41G17
5-PRIME, mRNA sequence
Length = 437
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 160 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 330
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 70 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 174
>gb|CA024227.1|CA024227 HZ48L14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48L14
5-PRIME, mRNA sequence
Length = 428
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +3
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 159 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 329
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +3
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 69 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 173
>gb|CA026240.1|CA026240 HZ55F09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55F09
5-PRIME, mRNA sequence
Length = 416
Score = 109 bits (233), Expect(2) = 5e-026
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KVAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 175 TVKVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 345
Score = 27.6 bits (54), Expect(2) = 5e-026
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 85 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVKVA 189
>gb|AL510956.1|AL510956 AL510956 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06I14u 3',
mRNA sequence
Length = 515
Score = 106 bits (227), Expect(2) = 2e-025
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T VAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 148 TVXVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 318
Score = 28.1 bits (55), Expect(2) = 2e-025
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKVAEA 452
P MA SRRMA VATE+G T V A
Sbjct: 58 PSRSMAQSRRMAGSALLLLLLLVATEMGATTVXVA 162
>gb|BG342887.2|BG342887 HVSMEg0001C01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001C01f, mRNA sequence
Length = 844
Score = 107 bits (228), Expect(2) = 3e-025
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = -2 / +2
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T VAEAR CLSQSH+FKG C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 158 TVNVAEARDCLSQSHKFKGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 328
Score = 27.2 bits (53), Expect(2) = 3e-025
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2 / +2
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKV 461
P MA SRRMA VATE+G T V
Sbjct: 68 PSRSMAQSRRMAGSALLLLLLLVATEMGATTV 163
>gb|CA021077.1|CA021077 HZ39A16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ39A16
5-PRIME, mRNA sequence
Length = 311
Score = 105 bits (225), Expect(2) = 6e-025
Identities = 36/57 (63%), Positives = 48/57 (84%)
Frame = -2 / +1
Query: 472 TTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKIC* 302
T KV+EAR+CLSQSH+++G C+SS+NCA VC+TENFP G+C + RKCFCK++C*
Sbjct: 136 TVKVSEARYCLSQSHKWRGTCLSSSNCAAVCRTENFPDGQCHTQNLARKCFCKRVC* 306
Score = 27.2 bits (53), Expect(2) = 6e-025
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2 / +1
Query: 556 PRGVMALSRRMAAPXXXXXXXXVATELGTTKV 461
P MA SRRMA VATE+G T V
Sbjct: 46 PSRSMAQSRRMAGSALLLLLLLVATEMGATTV 141
>gb|BJ464544.1|BJ464544 BJ464544 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34o01 5', mRNA sequence
Length = 583
Score = 113 bits (242), Expect = 8e-025
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +1
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 127 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLXRKCYCKRT 306
Query: 307 C* 302
C*
Sbjct: 307 C* 312
>gb|BF629069.2|BF629069 HVSMEb0009M06f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009M06f, mRNA sequence
Length = 821
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 117 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 296
Query: 307 C* 302
C*
Sbjct: 297 C* 302
>gb|BE231073.2|BE231073 HVSMEg0016F11f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016F11f, mRNA sequence
Length = 891
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 117 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 296
Query: 307 C* 302
C*
Sbjct: 297 C* 302
>gb|BG344662.2|BG344662 HVSMEg0009P10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009P10f, mRNA sequence
Length = 605
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 117 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 296
Query: 307 C* 302
C*
Sbjct: 297 C* 302
>gb|AW983351.3|AW983351 HVSMEg0010F06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010F06f, mRNA sequence
Length = 608
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +2
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 116 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 295
Query: 307 C* 302
C*
Sbjct: 296 C* 301
>gb|BJ453363.1|BJ453363 BJ453363 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42l10 5', mRNA sequence
Length = 581
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +1
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 121 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 300
Query: 307 C* 302
C*
Sbjct: 301 C* 306
>gb|BJ460908.1|BJ460908 BJ460908 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42l10 3', mRNA sequence
Length = 558
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / -3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 439 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 260
Query: 307 C* 302
C*
Sbjct: 259 C* 254
>gb|BJ466896.1|BJ466896 BJ466896 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34o01 3', mRNA sequence
Length = 560
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / -2
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 445 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 266
Query: 307 C* 302
C*
Sbjct: 265 C* 260
>gb|BQ470043.1|BQ470043 HX01J18T HX Hordeum vulgare subsp. vulgare cDNA clone HX01J18
5-PRIME, mRNA sequence
Length = 497
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +3
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 108 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 287
Query: 307 C* 302
C*
Sbjct: 288 C* 293
>gb|BQ664970.1|BQ664970 HX01J18w HX Hordeum vulgare subsp. vulgare cDNA clone HX01J18
3-PRIME, mRNA sequence
Length = 467
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / -1
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 392 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 213
Query: 307 C* 302
C*
Sbjct: 212 C* 207
>gb|BM100389.2|BM100389 EBma01_SQ005_B05_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_B05 5', mRNA sequence
Length = 521
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +2
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 92 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 271
Query: 307 C* 302
C*
Sbjct: 272 C* 277
>gb|BQ757010.1|BQ757010 EBem10_SQ002_I03_R embryo, 2 Day germination, no treatment, cv
Optic, EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ002_I03 5', mRNA sequence
Length = 293
Score = 113 bits (241), Expect = 1e-024
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -2 / +2
Query: 487 ATELGTTKVAEARHCLSQSHRFKGLCMSSNNCANVCQTENFPGGECKAEGATRKCFCKKI 308
ATE+GT K AEAR CLSQSH+FKG C+S++NCA VC+TENFP GEC + RKC+CK+
Sbjct: 104 ATEMGTMKAAEARTCLSQSHKFKGTCLSNSNCAGVCRTENFPDGECNSHRLERKCYCKRT 283
Query: 307 C* 302
C*
Sbjct: 284 C* 289
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 311,235,696
Number of Sequences: 312970
Number of extensions: 5268839
Number of successful extensions: 98310
Number of sequences better than 1.0e-020: 121
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7210840530
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)