TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ764915.1|BQ764915 EBca01_SQ005_B12_R carpel, pre-anthe... 234 4e-064
gb|BU990110.1|BU990110 HF24B24r HF Hordeum vulgare subsp. v... 234 2e-063
gb|BE602597.3|BE602597 HVSMEh0100E21f Hordeum vulgare 5-45 ... 147 1e-034
gb|BI776636.2|BI776636 EBpi07_SQ001_D15_R pistil, 12 DPA, n... 83 5e-032
gb|AL507344.1|AL507344 AL507344 Hordeum vulgare Barke devel... 111 9e-024
gb|BJ477067.1|BJ477067 BJ477067 K. Sato unpublished cDNA li... 104 2e-023
gb|AV936595.1|AV936595 AV936595 K. Sato unpublished cDNA li... 104 2e-023
gb|BJ475678.1|BJ475678 BJ475678 K. Sato unpublished cDNA li... 104 2e-023
gb|BJ476594.1|BJ476594 BJ476594 K. Sato unpublished cDNA li... 95 9e-021
>gb|BQ764915.1|BQ764915 EBca01_SQ005_B12_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_B12 5', mRNA sequence
Length = 657
Score = 234 bits (506), Expect(2) = 4e-064
Identities = 95/143 (66%), Positives = 116/143 (81%)
Frame = -2 / +2
Query: 1071 NSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDV 892
+ G+SK R AQTLLPLTVKQ MDA QT+ D+S+FA+NG EVST+RLVGRM+ K+ERVTDV
Sbjct: 170 SGGISKSRGAQTLLPLTVKQIMDATQTNDDKSSFAVNGTEVSTVRLVGRMMNKIERVTDV 349
Query: 891 VFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTN 712
F LDDGTG+I+VNRW NE SD EM + +YVIV GGLK FQGKRH+VAY+VR VTN
Sbjct: 350 QFVLDDGTGRIEVNRWANETSDTTEMGLVKDGDYVIVNGGLKSFQGKRHIVAYSVRLVTN 529
Query: 711 FNEITCHFLHCIQVHMELPGLKQ 643
+N+IT HFL+CI VH++L K+
Sbjct: 530 YNDITHHFLYCIYVHLDLAKAKK 598
Score = 102 bits (218), Expect = 4e-021
Identities = 57/115 (49%), Positives = 66/115 (57%)
Frame = +3 / -2
Query: 663 PYAPECSAESDRLFH*SLSHAAQHRQLHGAFLENLSNRQ*L*HSSRY*HQPSP*HRKPHF 842
P A +CS ESD L+H S AA+++Q A L + S+ * *HS * P * H
Sbjct: 578 PNAHKCSTESDVLYHCSWLQAARNKQQCDASLGSFSDHH*Q*HSHHP*LNPFL*CLMSHL 399
Query: 843 PSDSHLSCQYHHQE*IQHL*HAQPYLACVQQA*S*TPQRR*WRN*TCHRWFAPRP 1007
PS S LSC YHHQE I HL* A Y +CV QA* TP+ * RN TC RW RP
Sbjct: 398 PSGSLLSCLYHHQERIVHL*PALSYSSCVLQA*PWTPRFH*QRNWTCRRWSGWRP 234
Score = 100 bits (212), Expect(2) = 4e-021
Identities = 50/93 (53%), Positives = 55/93 (59%)
Frame = +1 / -3
Query: 844 PAIHIYLASTIIKSEYNICDTLNLT*HASNKPNRRHLNAVDGEIRPVTAGLRRVHGLFHG 1023
PA+H Y A TIIK+E ICD L L HAS KPNR HL ++D E V GL VH L G
Sbjct: 397 PAVHFYPACTIIKNELYICDPLYLIHHASYKPNRGHLGSIDSETGLVVVGLGGVHNLLDG 218
Query: 1024 EREQRLRAPTLREAAVLRDHRGL*GHEAPAAEE 1122
EREQRLRA TL +AA G G AA E
Sbjct: 217 EREQRLRAATLADAAATVRGVGGLGGHEAAAAE 119
Score = 95.9 bits (203), Expect(3) = 7e-032
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +2 / -1
Query: 845 QRFTSILPVPXXXXXXXXXXXXXLPSMRPTSLIVDTSTPLMAKLDLSPLVCAASMVCFTV 1024
QRFTSILPVP L MRPTSL VDTS PL AKLDLS LV AS++C TV
Sbjct: 396 QRFTSILPVPSSRTNCTSVTRSILFIMRPTSLTVDTSVPLTAKLDLSSLVWVASIICLTV 217
Query: 1025 SGSSVCALRPLERP 1066
SGSSVCA R L P
Sbjct: 216 SGSSVCAPRLLLMP 175
Score = 55.6 bits (115), Expect(3) = 5e-022
Identities = 27/42 (64%), Positives = 28/42 (66%)
Frame = -1 / +1
Query: 952 GVYD*ACWTHAR*G*ACHRCCIHS**WYWQDRCESLGK*GFR 827
GV+ *AC TH * A HRC I S**WY QDR E LGK* R
Sbjct: 289 GVHG*ACRTHDE*DRAGHRCTIRS**WYRQDRSEPLGK*DIR 414
Score = 52.4 bits (108), Expect(3) = 7e-032
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +1 / -3
Query: 658 ELHMHLNAVQKVTGYFIEVCHTPHSIGNYMALSLKTFQTAND 783
E+ MH+NAVQKV Y I V + PH I N + L L+ FQT D
Sbjct: 583 EIQMHINAVQKVMCYIIVVGYKPHGISNNVTLPLEAFQTTID 458
Score = 51.0 bits (105), Expect(3) = 5e-022
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -3 / +3
Query: 794 TMS*SLAV*KVFKESAM*LPMLCGV*QTSMK*PVTFCTAFRCIWSS 657
TM S+ V*K K S L + CG+* T+M * +TFCTAF CIW S
Sbjct: 447 TMLLSMVV*KASKGSVTLLLIPCGL*PTTMI*HITFCTAFMCIWIS 584
Score = 35.9 bits (72), Expect(3) = 5e-022
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / +1
Query: 1051 SERADAAPAHRETDHGR 1001
S RADAAPAHR+ D+GR
Sbjct: 190 SRRADAAPAHRQADYGR 240
Score = 31.3 bits (62), Expect(2) = 4e-064
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3 / +3
Query: 1139 PGTLTRSSAAGASCPHSPRWSRRTAAS 1059
P T T SSAA ASCP P R AA+
Sbjct: 99 PPTPTPSSAAAASCPPRPPTPRTVAAA 179
Score = 27.6 bits (54), Expect(3) = 7e-032
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1 / -3
Query: 1063 AAVLRDHRGL*GHEAPAAEE 1122
AA +R GL GHEA AAEE
Sbjct: 175 AATVRGVGGLGGHEAAAAEE 116
Score = 24.9 bits (48), Expect(2) = 4e-021
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2 / -1
Query: 662 SICT*MQCRK*QVISL 709
S CT*MQ RK* VISL
Sbjct: 579 SKCT*MQYRK*CVISL 532
>gb|BU990110.1|BU990110 HF24B24r HF Hordeum vulgare subsp. vulgare cDNA clone HF24B24
5-PRIME, mRNA sequence
Length = 593
Score = 234 bits (506), Expect(2) = 2e-063
Identities = 95/143 (66%), Positives = 116/143 (81%)
Frame = -2 / +2
Query: 1071 NSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDV 892
+ G+SK R AQTLLPLTVKQ MDA QT+ D+S+FA+NG EVST+RLVGRM+ K+ERVTDV
Sbjct: 68 SGGISKSRGAQTLLPLTVKQIMDATQTNDDKSSFAVNGTEVSTVRLVGRMMNKIERVTDV 247
Query: 891 VFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTN 712
F LDDGTG+I+VNRW NE SD EM + +YVIV GGLK FQGKRH+VAY+VR VTN
Sbjct: 248 QFVLDDGTGRIEVNRWANETSDTTEMGLVKDGDYVIVNGGLKSFQGKRHIVAYSVRLVTN 427
Query: 711 FNEITCHFLHCIQVHMELPGLKQ 643
+N+IT HFL+CI VH++L K+
Sbjct: 428 YNDITHHFLYCIYVHLDLAKAKK 496
Score = 102 bits (218), Expect = 4e-021
Identities = 57/115 (49%), Positives = 66/115 (57%)
Frame = +3 / -1
Query: 663 PYAPECSAESDRLFH*SLSHAAQHRQLHGAFLENLSNRQ*L*HSSRY*HQPSP*HRKPHF 842
P A +CS ESD L+H S AA+++Q A L + S+ * *HS * P * H
Sbjct: 476 PNAHKCSTESDVLYHCSWLQAARNKQQCDASLGSFSDHH*Q*HSHHP*LNPFL*CLMSHL 297
Query: 843 PSDSHLSCQYHHQE*IQHL*HAQPYLACVQQA*S*TPQRR*WRN*TCHRWFAPRP 1007
PS S LSC YHHQE I HL* A Y +CV QA* TP+ * RN TC RW RP
Sbjct: 296 PSGSLLSCLYHHQERIVHL*PALSYSSCVLQA*PWTPRFH*QRNWTCRRWSGWRP 132
Score = 100 bits (212), Expect(2) = 3e-021
Identities = 50/93 (53%), Positives = 55/93 (59%)
Frame = +1 / -2
Query: 844 PAIHIYLASTIIKSEYNICDTLNLT*HASNKPNRRHLNAVDGEIRPVTAGLRRVHGLFHG 1023
PA+H Y A TIIK+E ICD L L HAS KPNR HL ++D E V GL VH L G
Sbjct: 295 PAVHFYPACTIIKNELYICDPLYLIHHASYKPNRGHLGSIDSETGLVVVGLGGVHNLLDG 116
Query: 1024 EREQRLRAPTLREAAVLRDHRGL*GHEAPAAEE 1122
EREQRLRA TL +AA G G AA E
Sbjct: 115 EREQRLRAATLADAAATVRGVGGLGGHEAAAAE 17
Score = 95.9 bits (203), Expect(3) = 7e-032
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +2 / -3
Query: 845 QRFTSILPVPXXXXXXXXXXXXXLPSMRPTSLIVDTSTPLMAKLDLSPLVCAASMVCFTV 1024
QRFTSILPVP L MRPTSL VDTS PL AKLDLS LV AS++C TV
Sbjct: 294 QRFTSILPVPSSRTNCTSVTRSILFIMRPTSLTVDTSVPLTAKLDLSSLVWVASIICLTV 115
Query: 1025 SGSSVCALRPLERP 1066
SGSSVCA R L P
Sbjct: 114 SGSSVCAPRLLLMP 73
Score = 55.6 bits (115), Expect(3) = 5e-022
Identities = 27/42 (64%), Positives = 28/42 (66%)
Frame = -1 / +1
Query: 952 GVYD*ACWTHAR*G*ACHRCCIHS**WYWQDRCESLGK*GFR 827
GV+ *AC TH * A HRC I S**WY QDR E LGK* R
Sbjct: 187 GVHG*ACRTHDE*DRAGHRCTIRS**WYRQDRSEPLGK*DIR 312
Score = 52.4 bits (108), Expect(3) = 7e-032
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = +1 / -2
Query: 658 ELHMHLNAVQKVTGYFIEVCHTPHSIGNYMALSLKTFQTAND 783
E+ MH+NAVQKV Y I V + PH I N + L L+ FQT D
Sbjct: 481 EIQMHINAVQKVMCYIIVVGYKPHGISNNVTLPLEAFQTTID 356
Score = 51.0 bits (105), Expect(3) = 5e-022
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -3 / +3
Query: 794 TMS*SLAV*KVFKESAM*LPMLCGV*QTSMK*PVTFCTAFRCIWSS 657
TM S+ V*K K S L + CG+* T+M * +TFCTAF CIW S
Sbjct: 345 TMLLSMVV*KASKGSVTLLLIPCGL*PTTMI*HITFCTAFMCIWIS 482
Score = 35.9 bits (72), Expect(3) = 5e-022
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / +1
Query: 1051 SERADAAPAHRETDHGR 1001
S RADAAPAHR+ D+GR
Sbjct: 88 SRRADAAPAHRQADYGR 138
Score = 29.0 bits (57), Expect(2) = 2e-063
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3 / +3
Query: 1133 TLTRSSAAGASCPHSPRWSRRTAAS 1059
T T SSAA ASCP P R AA+
Sbjct: 3 TPTPSSAAAASCPPRPPTPRTVAAA 77
Score = 27.6 bits (54), Expect(3) = 7e-032
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1 / -2
Query: 1063 AAVLRDHRGL*GHEAPAAEE 1122
AA +R GL GHEA AAEE
Sbjct: 73 AATVRGVGGLGGHEAAAAEE 14
Score = 24.9 bits (48), Expect(2) = 3e-021
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2 / -3
Query: 662 SICT*MQCRK*QVISL 709
S CT*MQ RK* VISL
Sbjct: 477 SKCT*MQYRK*CVISL 430
>gb|BE602597.3|BE602597 HVSMEh0100E21f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0100E21f, mRNA sequence
Length = 732
Score = 147 bits (316), Expect = 1e-034
Identities = 64/145 (44%), Positives = 86/145 (59%)
Frame = -2 / +1
Query: 1095 SQSTVVPENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLG 916
SQ+ +G S L + A T F ++GVE + +RLVG + G
Sbjct: 115 SQNAAADSTPNKFRGASGTMPLTVKQIADAQLAGTGEKGGPFVVDGVETANVRLVGMVSG 294
Query: 915 KVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVA 736
KVER TDV FTLDDGTG+ID RW N+A+D+ E A N YV VIG LKG Q K+ A
Sbjct: 295 KVERNTDVSFTLDDGTGRIDFIRWVNDAADSAETAAIQNGMYVAVIGSLKGVQDKKRATA 474
Query: 735 YAVRRVTNFNEITCHFLHCIQVHME 661
+AVR +T++NE+T HF+ C+++H E
Sbjct: 475 FAVRPITDYNEVTLHFIQCVRMHAE 549
>gb|BI776636.2|BI776636 EBpi07_SQ001_D15_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ001_D15 5', mRNA sequence
Length = 526
Score = 82.6 bits (174), Expect(2) = 5e-032
Identities = 31/57 (54%), Positives = 43/57 (75%)
Frame = -2 / +1
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKS 385
VL+VF +P+ M+ +HG+H+ D+ R +LP + AI HVDVG+IY+TIDDFHYKS
Sbjct: 346 VLNVFREPANMESDHGVHMDDIAKRFRLPALKIKEAIDYHVDVGHIYSTIDDFHYKS 516
Score = 78.5 bits (165), Expect(2) = 5e-032
Identities = 29/60 (48%), Positives = 42/60 (70%)
Frame = -2 / +1
Query: 840 NEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHME 661
N+A+D+ E A N YV VIG LKG Q K+ A+AVR +T++NE+T HF+ C+++H E
Sbjct: 4 NDAADSAETAAIQNGMYVAVIGSLKGVQDKKRATAFAVRPITDYNEVTLHFIQCVRMHAE 183
>gb|AL507344.1|AL507344 AL507344 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05B07V 5',
mRNA sequence
Length = 659
Score = 111 bits (237), Expect = 9e-024
Identities = 53/122 (43%), Positives = 67/122 (54%)
Frame = -2 / +1
Query: 1095 SQSTVVPENSGLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLG 916
SQ+ +G S L + A T F ++GVE + +RLVG + G
Sbjct: 124 SQNAAADSTPNKFRGASGTMPLTVKQIADAQLAGTGEKGGPFVVDGVETANVRLVGMVSG 303
Query: 915 KVERVTDVVFTLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVA 736
KVER TDV FTLDDGTG+ID RW N+A+D+ E A N YV VIG LKG Q K+ A
Sbjct: 304 KVERNTDVSFTLDDGTGRIDFIRWVNDAADSAETAAIQNGMYVAVIGSLKGVQDKKRATA 483
Query: 735 YA 730
+A
Sbjct: 484 FA 489
>gb|BJ477067.1|BJ477067 BJ477067 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal39k22 3', mRNA sequence
Length = 717
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = -2 / -1
Query: 1050 RSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDG 871
R+ +L P T+K +DA ++ F I+G+ VS++ L+G + K + F L DG
Sbjct: 681 RAPSSLRPFTIKVLLDAFYDDTEQYPFVIDGMAVSSVELLGMVTNKTVSMDHCTFDLYDG 502
Query: 870 TGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCH 691
TG ++V W A D+K+ +N YV V+G + + AY VR + NFN++T H
Sbjct: 501 TGAVNVIYWFEGAQDSKDAWSFSNGMYVRVVGRTTSMEQFFQIKAYIVRPINNFNDVTHH 322
Query: 690 FLHCIQVHMEL 658
F++CI H+++
Sbjct: 321 FIYCIYAHIDI 289
Score = 25.8 bits (50), Expect(2) = 2e-023
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVV 457
+ SV DP+ EHG+ +K + + + DV+
Sbjct: 232 IFSVLRDPAYSALEHGVSLKLLRNAVDASQDVI 134
>gb|AV936595.1|AV936595 AV936595 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal5b09 3', mRNA sequence
Length = 687
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = -2 / -1
Query: 1050 RSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDG 871
R+ +L P T+K +DA ++ F I+G+ VS++ L+G + K + F L DG
Sbjct: 657 RAPSSLRPFTIKVLLDAFYDDTEQYPFVIDGMAVSSVELLGMVTNKTVSMDHCTFDLYDG 478
Query: 870 TGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCH 691
TG ++V W A D+K+ +N YV V+G + + AY VR + NFN++T H
Sbjct: 477 TGAVNVIYWFEGAQDSKDAWSFSNGMYVRVVGRTTSMEQFFQIKAYIVRPINNFNDVTHH 298
Query: 690 FLHCIQVHMEL 658
F++CI H+++
Sbjct: 297 FIYCIYAHIDI 265
Score = 25.8 bits (50), Expect(2) = 2e-023
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVV 457
+ SV DP+ EHG+ +K + + + DV+
Sbjct: 208 IFSVLRDPAYSALEHGVSLKLLRNAVDASQDVI 110
>gb|BJ475678.1|BJ475678 BJ475678 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal29h02 3', mRNA sequence
Length = 662
Score = 104 bits (221), Expect(2) = 2e-023
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = -2 / -3
Query: 1050 RSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDG 871
R+ +L P T+K +DA ++ F I+G+ VS++ L+G + K + F L DG
Sbjct: 657 RAPSSLRPFTIKVLLDAFYDDTEQYPFVIDGMAVSSVELLGMVTNKTVSMDHCTFDLYDG 478
Query: 870 TGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCH 691
TG ++V W A D+K+ +N YV V+G + + AY VR + NFN++T H
Sbjct: 477 TGAVNVIYWFEGAQDSKDAWSFSNGMYVRVVGRTTSMEQFFQIKAYIVRPINNFNDVTHH 298
Query: 690 FLHCIQVHMEL 658
F++CI H+++
Sbjct: 297 FIYCIYAHIDI 265
Score = 25.8 bits (50), Expect(2) = 2e-023
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -2
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVV 457
+ SV DP+ EHG+ +K + + + DV+
Sbjct: 208 IFSVLRDPAYSALEHGVSLKLLRNAVDASQDVI 110
>gb|BJ476594.1|BJ476594 BJ476594 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35n21 3', mRNA sequence
Length = 626
Score = 95.0 bits (201), Expect(2) = 9e-021
Identities = 40/121 (33%), Positives = 67/121 (55%)
Frame = -2 / -1
Query: 1020 VKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRWE 841
+K +DA ++ F I+G+ VS++ L+G + K + F L DGTG ++V W
Sbjct: 626 IKVLLDAFYDDTEQYPFVIDGMAVSSVELLGMVTNKTVSMDHCTFDLYDGTGAVNVIYWF 447
Query: 840 NEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHCIQVHME 661
A D+K+ +N YV V+G + + AY VR + NFN++T HF++CI H++
Sbjct: 446 EGAQDSKDAWSFSNGMYVRVVGRTTSMEQFFQIKAYIVRPINNFNDVTHHFIYCIYAHID 267
Query: 660 L 658
+
Sbjct: 266 I 264
Score = 25.8 bits (50), Expect(2) = 9e-021
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2 / -3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVV 457
+ SV DP+ EHG+ +K + + + DV+
Sbjct: 207 IFSVLRDPAYSALEHGVSLKLLRNAVDASQDVI 109
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 547,885,872
Number of Sequences: 312970
Number of extensions: 8645718
Number of successful extensions: 60462
Number of sequences better than 1.0e-020: 12
length of database: 58,378,179
effective HSP length: 53
effective length of database: 41,790,769
effective search space used: 15713329144
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)