TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2188214.2.1
(880 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA li... 195 2e-049
gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. v... 195 2e-049
gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. v... 195 2e-049
gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed D... 195 3e-049
gb|BQ664207.1|BQ664207 HV02F10u HV Hordeum vulgare subsp. v... 181 4e-045
gb|CA010449.1|CA010449 HT09N07u HT Hordeum vulgare subsp. v... 179 2e-044
gb|AV928420.1|AV928420 AV928420 K. Sato unpublished cDNA li... 174 5e-043
gb|AV911026.1|AV911026 AV911026 K. Sato unpublished cDNA li... 166 2e-040
gb|BJ474523.1|BJ474523 BJ474523 K. Sato unpublished cDNA li... 163 1e-039
gb|BM097758.2|BM097758 EBem04_SQ002_J20_R embryo, 12 DPA, n... 138 6e-032
gb|BU975768.1|BU975768 HB32D23r BC Hordeum vulgare subsp. v... 85 1e-027
gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed D... 69 2e-025
gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA li... 69 2e-025
gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedl... 69 2e-025
gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA li... 68 5e-025
gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots... 105 3e-022
gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-a... 62 1e-021
>gb|AV936335.1|AV936335 AV936335 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10p08 3', mRNA sequence
Length = 678
Score = 195 bits (421), Expect = 2e-049
Identities = 79/112 (70%), Positives = 86/112 (76%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
+ N V PC HTIH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D
Sbjct: 472 ESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFD 293
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
KMVRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 292 DKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 137
Score = 169 bits (364), Expect = 2e-041
Identities = 74/100 (74%), Positives = 78/100 (78%)
Frame = +3 / +3
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 174 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 353
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT*MVXXXGXXXTXFXXS 872
S TDLEQ GHANWQ I F+HF+*+V G T F S
Sbjct: 354 SHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDS 473
Score = 113 bits (242), Expect = 1e-024
Identities = 48/96 (50%), Positives = 53/96 (55%)
Frame = +1 / +1
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 175 YFKFAGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 354
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHEWYXXXAXXXXH 861
H PTWS+ GM+ G+ LS HE Y A H
Sbjct: 355 HTPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHH 462
Score = 105 bits (225), Expect = 2e-022
Identities = 50/96 (52%), Positives = 59/96 (61%)
Frame = -2 / -1
Query: 861 MXXXXCXVXIPFM*SA*KXXXXTASLHAPFAPSRFVTCRRHGKGSTWSWQLCLTPVITKW 682
M C V I FM +A*K A+ HA APSR VTC+RHGK + +LC TP +W
Sbjct: 462 MMSLFCRVVIQFMKNA*KK*RSIANSHARSAPSRCVTCQRHGKDWMQN*RLCQTPSTIRW 283
Query: 681 SAYYATTAGQYQMCSSI*LRTSARIASHTTPARFEV 574
AY A AG+YQ CS *L SA +ASHTTP +FEV
Sbjct: 282 FAYCAMIAGRYQRCSFT*LHISAIVASHTTPGKFEV 175
Score = 100 bits (214), Expect = 8e-021
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / -2
Query: 863 KXCXXXAXXXYHSCKVPEXNXXXLPVCMPPLLQVGL*HVEGMGKARHGAGNSV*LL*SQN 684
K C A Y+S K+ E N LP+ MP LLQVG+*HV+GMGK +SV LL +
Sbjct: 464 K*CLCSAVWSYNS*KMLERNEGALPIRMPALLQVGV*HVKGMGKTGCRTSDSVKLLRR*D 285
Query: 683 GPHIMQRLRGNIRCAVPFDCAQVPELQVIQHPPDLK* 573
G HI+Q LRG IR AV +C VP LQVIQHP +LK*
Sbjct: 284 GSHIVQ*LRGGIRGAVSLNCT*VP*LQVIQHPANLK* 174
>gb|CB880964.1|CB880964 HM08F20w HM Hordeum vulgare subsp. vulgare cDNA clone HM08F20
3-PRIME, mRNA sequence
Length = 663
Score = 195 bits (421), Expect = 2e-049
Identities = 79/112 (70%), Positives = 86/112 (76%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
+ N V PC HTIH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D
Sbjct: 551 ESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFD 372
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
KMVRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 371 DKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 216
Score = 169 bits (364), Expect = 2e-041
Identities = 74/100 (74%), Positives = 78/100 (78%)
Frame = +3 / +1
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 253 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 432
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT*MVXXXGXXXTXFXXS 872
S TDLEQ GHANWQ I F+HF+*+V G T F S
Sbjct: 433 SHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDS 552
Score = 112 bits (239), Expect = 3e-024
Identities = 48/96 (50%), Positives = 53/96 (55%)
Frame = +1 / +2
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 254 YFKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 433
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHEWYXXXAXXXXH 861
H PTWS+ GM+ G+ LS HE Y A H
Sbjct: 434 HTPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHH 541
Score = 105 bits (223), Expect = 5e-022
Identities = 50/96 (52%), Positives = 59/96 (61%)
Frame = -2 / -3
Query: 861 MXXXXCXVXIPFM*SA*KXXXXTASLHAPFAPSRFVTCRRHGKGSTWSWQLCLTPVITKW 682
M C V I FM +A*K A+ HA APSR VTC+RHGK + +LC TP +W
Sbjct: 541 MMSLFCRVVIQFMKNA*KK*RSIANSHARSAPSRCVTCQRHGKDWMQN*RLCQTPSTIRW 362
Query: 681 SAYYATTAGQYQMCSSI*LRTSARIASHTTPARFEV 574
AY A AG+YQ CS *L SA +ASHTTP +FEV
Sbjct: 361 FAYCAMIAGRYQRCSFT*LHISAIVASHTTPDKFEV 254
Score = 100 bits (214), Expect = 8e-021
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / -1
Query: 863 KXCXXXAXXXYHSCKVPEXNXXXLPVCMPPLLQVGL*HVEGMGKARHGAGNSV*LL*SQN 684
K C A Y+S K+ E N LP+ MP LLQVG+*HV+GMGK +SV LL +
Sbjct: 543 K*CLCSAVWSYNS*KMLERNEGALPIRMPALLQVGV*HVKGMGKTGCRTSDSVKLLRR*D 364
Query: 683 GPHIMQRLRGNIRCAVPFDCAQVPELQVIQHPPDLK* 573
G HI+Q LRG IR AV +C VP LQVIQHP +LK*
Sbjct: 363 GSHIVQ*LRGGIRGAVSLNCT*VP*LQVIQHPTNLK* 253
>gb|CB882449.1|CB882449 HL01O07w HL Hordeum vulgare subsp. vulgare cDNA clone HL01O07
3-PRIME, mRNA sequence
Length = 593
Score = 195 bits (421), Expect = 2e-049
Identities = 79/112 (70%), Positives = 86/112 (76%)
Frame = -1 / +1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
+ N V PC HTIH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D
Sbjct: 205 ESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFD 384
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
KMVRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 385 DKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 540
Score = 169 bits (364), Expect = 2e-041
Identities = 74/100 (74%), Positives = 78/100 (78%)
Frame = +3 / -1
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 503 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 324
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT*MVXXXGXXXTXFXXS 872
S TDLEQ GHANWQ I F+HF+*+V G T F S
Sbjct: 323 SHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDS 204
Score = 112 bits (239), Expect = 3e-024
Identities = 48/96 (50%), Positives = 53/96 (55%)
Frame = +1 / -2
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 502 YFKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 323
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHEWYXXXAXXXXH 861
H PTWS+ GM+ G+ LS HE Y A H
Sbjct: 322 HTPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHH 215
Score = 105 bits (223), Expect = 5e-022
Identities = 50/96 (52%), Positives = 59/96 (61%)
Frame = -2 / +2
Query: 861 MXXXXCXVXIPFM*SA*KXXXXTASLHAPFAPSRFVTCRRHGKGSTWSWQLCLTPVITKW 682
M C V I FM +A*K A+ HA APSR VTC+RHGK + +LC TP +W
Sbjct: 215 MMSLFCRVVIQFMKNA*KK*RSIANSHARSAPSRCVTCQRHGKDWMQN*RLCQTPSTIRW 394
Query: 681 SAYYATTAGQYQMCSSI*LRTSARIASHTTPARFEV 574
AY A AG+YQ CS *L SA +ASHTTP +FEV
Sbjct: 395 FAYCAMIAGRYQRCSFT*LHISAIVASHTTPDKFEV 502
Score = 100 bits (214), Expect = 8e-021
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / +3
Query: 863 KXCXXXAXXXYHSCKVPEXNXXXLPVCMPPLLQVGL*HVEGMGKARHGAGNSV*LL*SQN 684
K C A Y+S K+ E N LP+ MP LLQVG+*HV+GMGK +SV LL +
Sbjct: 213 K*CLCSAVWSYNS*KMLERNEGALPIRMPALLQVGV*HVKGMGKTGCRTSDSVKLLRR*D 392
Query: 683 GPHIMQRLRGNIRCAVPFDCAQVPELQVIQHPPDLK* 573
G HI+Q LRG IR AV +C VP LQVIQHP +LK*
Sbjct: 393 GSHIVQ*LRGGIRGAVSLNCT*VP*LQVIQHPTNLK* 503
>gb|CD663353.1|CD663353 UCRHV18_05ah10_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05ah10, mRNA sequence
Length = 706
Score = 195 bits (420), Expect = 3e-049
Identities = 77/99 (77%), Positives = 82/99 (82%)
Frame = -1 / -2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCD 692
+ N V PC HTIH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D
Sbjct: 549 ESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFD 370
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI*S 575
KMVRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQI*S
Sbjct: 369 DKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*S 253
Score = 169 bits (364), Expect = 2e-041
Identities = 74/100 (74%), Positives = 78/100 (78%)
Frame = +3 / +2
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 251 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 430
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT*MVXXXGXXXTXFXXS 872
S TDLEQ GHANWQ I F+HF+*+V G T F S
Sbjct: 431 SHTDLEQSGHANWQCSFISFKHFS*IV*PHGRTETSFLDS 550
Score = 113 bits (242), Expect = 1e-024
Identities = 48/96 (50%), Positives = 53/96 (55%)
Frame = +1 / +3
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 252 YFKFAGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 431
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHEWYXXXAXXXXH 861
H PTWS+ GM+ G+ LS HE Y A H
Sbjct: 432 HTPTWSRAGMRIGNAPSFLSSIFHELYDHTAEQRHH 539
Score = 105 bits (225), Expect = 2e-022
Identities = 50/96 (52%), Positives = 59/96 (61%)
Frame = -2 / -3
Query: 861 MXXXXCXVXIPFM*SA*KXXXXTASLHAPFAPSRFVTCRRHGKGSTWSWQLCLTPVITKW 682
M C V I FM +A*K A+ HA APSR VTC+RHGK + +LC TP +W
Sbjct: 539 MMSLFCRVVIQFMKNA*KK*RSIANSHARSAPSRCVTCQRHGKDWMQN*RLCQTPSTIRW 360
Query: 681 SAYYATTAGQYQMCSSI*LRTSARIASHTTPARFEV 574
AY A AG+YQ CS *L SA +ASHTTP +FEV
Sbjct: 359 FAYCAMIAGRYQRCSFT*LHISAIVASHTTPGKFEV 252
Score = 100 bits (214), Expect = 8e-021
Identities = 52/97 (53%), Positives = 62/97 (63%)
Frame = -3 / -1
Query: 863 KXCXXXAXXXYHSCKVPEXNXXXLPVCMPPLLQVGL*HVEGMGKARHGAGNSV*LL*SQN 684
K C A Y+S K+ E N LP+ MP LLQVG+*HV+GMGK +SV LL +
Sbjct: 541 K*CLCSAVWSYNS*KMLERNEGALPIRMPALLQVGV*HVKGMGKTGCRTSDSVKLLRR*D 362
Query: 683 GPHIMQRLRGNIRCAVPFDCAQVPELQVIQHPPDLK* 573
G HI+Q LRG IR AV +C VP LQVIQHP +LK*
Sbjct: 361 GSHIVQ*LRGGIRGAVSLNCT*VP*LQVIQHPANLK* 251
>gb|BQ664207.1|BQ664207 HV02F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV02F10
3-PRIME, mRNA sequence
Length = 497
Score = 181 bits (390), Expect = 4e-045
Identities = 74/99 (74%), Positives = 80/99 (80%)
Frame = -1 / -3
Query: 832 TIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGA 653
TIH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA
Sbjct: 495 TIHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGA 316
Query: 652 ISDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
+S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 315 VSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 199
Score = 165 bits (354), Expect = 4e-040
Identities = 70/87 (80%), Positives = 74/87 (85%)
Frame = +3 / +2
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 236 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 415
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT*MV 833
S TDLEQ GHANWQ I F+HF+*+V
Sbjct: 416 SHTDLEQSGHANWQCSFISFKHFS*IV 496
Score = 109 bits (233), Expect = 2e-023
Identities = 46/87 (52%), Positives = 51/87 (58%)
Frame = +1 / +3
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 237 YFKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 416
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHEWY 834
H PTWS+ GM+ G+ LS HE Y
Sbjct: 417 HTPTWSRAGMRIGNAPSFLSSIFHELY 497
>gb|CA010449.1|CA010449 HT09N07u HT Hordeum vulgare subsp. vulgare cDNA clone HT09N07
3-PRIME, mRNA sequence
Length = 488
Score = 179 bits (385), Expect = 2e-044
Identities = 73/98 (74%), Positives = 79/98 (80%)
Frame = -1 / -1
Query: 829 IHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGAI 650
IH KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA+
Sbjct: 488 IHEKCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAV 309
Query: 649 SDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 308 SEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 195
Score = 162 bits (349), Expect = 2e-039
Identities = 69/85 (81%), Positives = 72/85 (84%)
Frame = +3 / +1
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 232 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 411
Query: 753 SQTDLEQRGHANWQXXXIXFRHFT* 827
S TDLEQ GHANWQ I F+HF+*
Sbjct: 412 SHTDLEQSGHANWQCSFISFKHFS* 486
Score = 107 bits (228), Expect = 1e-022
Identities = 45/85 (52%), Positives = 50/85 (58%)
Frame = +1 / +2
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 233 YFKFVGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 412
Query: 754 HKPTWSKGGMQTGSXXXXLSGTLHE 828
H PTWS+ GM+ G+ LS HE
Sbjct: 413 HTPTWSRAGMRIGNAPSFLSSIFHE 487
>gb|AV928420.1|AV928420 AV928420 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg02 3', mRNA sequence
Length = 752
Score = 174 bits (375), Expect = 5e-043
Identities = 71/95 (74%), Positives = 77/95 (81%)
Frame = -1 / -1
Query: 820 KCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGAISDV 641
KCLK CQFACPLCSKSVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA+S+V
Sbjct: 749 KCLKEMKEHCQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEV 570
Query: 640 QFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
QFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 569 QFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 465
Score = 161 bits (347), Expect = 4e-039
Identities = 68/83 (81%), Positives = 70/83 (84%)
Frame = +3 / +1
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 502 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 681
Query: 753 SQTDLEQRGHANWQXXXIXFRHF 821
S TDLEQ GHANWQ I F+HF
Sbjct: 682 SHTDLEQSGHANWQCSFISFKHF 750
Score = 103 bits (219), Expect = 2e-021
Identities = 43/80 (53%), Positives = 48/80 (60%)
Frame = +1 / +2
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFK GCCMTCN GT Q + TA LI PR+ C IC P RS TE FPMP TC
Sbjct: 503 YFKFAGCCMTCNYGTYVQLSETAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 682
Query: 754 HKPTWSKGGMQTGSXXXXLS 813
H PTWS+ GM+ G+ LS
Sbjct: 683 HTPTWSRAGMRIGNAPSFLS 742
>gb|AV911026.1|AV911026 AV911026 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11m03 3', mRNA sequence
Length = 685
Score = 166 bits (357), Expect = 2e-040
Identities = 67/86 (77%), Positives = 73/86 (84%)
Frame = -1 / -3
Query: 793 CQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKC 614
CQFACPLCSKSVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA+S+VQFHLIAHKC
Sbjct: 674 CQFACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIAHKC 495
Query: 613 QNCKSYNTRQI*SKNRKSHNTVRSEI 536
+CKSYNTRQI*S +T E+
Sbjct: 494 HSCKSYNTRQI*SSEPWRDSTFFLEV 417
Score = 158 bits (339), Expect = 5e-038
Identities = 65/74 (87%), Positives = 66/74 (89%)
Frame = +3 / +1
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIKWNCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 454 LLQICRVLYDLQLWHLCAIKWNCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 633
Query: 753 SQTDLEQRGHANWQ 794
S TDLEQ GHANWQ
Sbjct: 634 SHTDLEQSGHANWQ 675
Score = 107 bits (228), Expect = 1e-022
Identities = 43/74 (58%), Positives = 48/74 (64%)
Frame = +1 / +2
Query: 574 YFKSGGCCMTCNSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTELPAPCRAFPMPSTC 753
YFKS GCCMTCN GT Q +GTA LI PR+ C IC P RS TE FPMP TC
Sbjct: 455 YFKSAGCCMTCNYGTYVQLSGTAPLIPPRNHCTICEPSYRRRSLTESLVLHPVFPMPLTC 634
Query: 754 HKPTWSKGGMQTGS 795
H PTWS+ GM+ G+
Sbjct: 635 HTPTWSRAGMRIGN 676
>gb|BJ474523.1|BJ474523 BJ474523 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14f22 3', mRNA sequence
Length = 389
Score = 163 bits (351), Expect = 1e-039
Identities = 66/86 (76%), Positives = 72/86 (83%)
Frame = -1 / -2
Query: 793 CQFACPLCSKSVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKC 614
CQ ACPLCSKSVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA+S+VQFHLIAHKC
Sbjct: 382 CQLACPLCSKSVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIAHKC 203
Query: 613 QNCKSYNTRQI*SKNRKSHNTVRSEI 536
+CKSYNTRQI*S +T E+
Sbjct: 202 HSCKSYNTRQI*SSEPWRDSTFFLEV 125
Score = 151 bits (324), Expect = 6e-036
Identities = 64/74 (86%), Positives = 65/74 (87%)
Frame = +3 / +3
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 162 LLQIXRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 341
Query: 753 SQTDLEQRGHANWQ 794
S TDLEQ GHANWQ
Sbjct: 342 SHTDLEQSGHANWQ 383
>gb|BM097758.2|BM097758 EBem04_SQ002_J20_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_J20 5', mRNA sequence
Length = 424
Score = 138 bits (295), Expect = 6e-032
Identities = 57/76 (75%), Positives = 63/76 (82%)
Frame = -1 / +2
Query: 763 SVCDMSKAWERLDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
SVCDMSKAWERLD ELATLS+S D KMVRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQ
Sbjct: 2 SVCDMSKAWERLDAELATLSNSFDDKMVRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQ 181
Query: 583 I*SKNRKSHNTVRSEI 536
I*S +T E+
Sbjct: 182 I*SSEPWRDSTFFLEV 229
Score = 127 bits (271), Expect = 1e-028
Identities = 55/64 (85%), Positives = 56/64 (87%)
Frame = +3 / -2
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRVASSMSSLSHAFDM 752
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRTIL S+E DRVASS SSLSHAFDM
Sbjct: 192 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRTILSSKEFDRVASSASSLSHAFDM 13
Query: 753 SQTD 764
S TD
Sbjct: 12 SHTD 1
>gb|BU975768.1|BU975768 HB32D23r BC Hordeum vulgare subsp. vulgare cDNA clone HB32D23
5-PRIME, mRNA sequence
Length = 470
Score = 85.4 bits (180), Expect(2) = 1e-027
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = -1 / +3
Query: 682 VRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI*SKNRKSHNTVRSEI 536
VRILCNDCGA+S+VQFHLIAHKC +CKSYNTRQI*S +T E+
Sbjct: 213 VRILCNDCGAVSEVQFHLIAHKCHSCKSYNTRQI*SSEPWRDSTFFLEV 359
Score = 82.2 bits (173), Expect(2) = 2e-024
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = +3 / -2
Query: 573 LLQIWRVLYDLQFWHLCAIKWNCTSDIAPQSLHNMRT 683
LLQI RVLYDLQ WHLCAIK NCTSD APQSLHNMRT
Sbjct: 322 LLQICRVLYDLQLWHLCAIK*NCTSDTAPQSLHNMRT 212
Score = 59.7 bits (124), Expect(2) = 1e-027
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -1 / +3
Query: 766 KSVCDMSKAWERLDMELATLSDSCDHKMV 680
KSVCDMSKAWERLD ELATLS+S D KMV
Sbjct: 3 KSVCDMSKAWERLDAELATLSNSFDDKMV 89
Score = 51.9 bits (107), Expect(2) = 2e-024
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +3 / -2
Query: 681 TIL*SQESDRVASSMSSLSHAFDMSQTDL 767
TIL S+E DRVASS SSLSHAFDMS TDL
Sbjct: 88 TILSSKEFDRVASSASSLSHAFDMSHTDL 2
>gb|CD662384.1|CD662384 UCRHV18_02aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02aa05, mRNA sequence
Length = 896
Score = 68.9 bits (144), Expect(2) = 2e-025
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + C HTIH++CL F+CP+CS+S CDM+ AW++LD E+A
Sbjct: 753 DSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLDQEVA 595
Score = 66.6 bits (139), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -1 / -3
Query: 688 KMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
KMV ILCNDCGA S V+FH++A KC C SYNTR+
Sbjct: 564 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTRE 460
>gb|AV928554.1|AV928554 AV928554 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdn20 3', mRNA sequence
Length = 751
Score = 68.9 bits (144), Expect(2) = 2e-025
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + C HTIH++CL F+CP+CS+S CDM+ AW++LD E+A
Sbjct: 707 DSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLDQEVA 549
Score = 66.6 bits (139), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -1 / -3
Query: 688 KMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
KMV ILCNDCGA S V+FH++A KC C SYNTR+
Sbjct: 518 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTRE 414
>gb|BF625611.2|BF625611 HVSMEa0011O14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011O14f, mRNA sequence
Length = 638
Score = 68.9 bits (144), Expect(2) = 2e-025
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
D + C HTIH++CL F+CP+CS+S CDM+ AW++LD E+A
Sbjct: 218 DSTMDISVLHCGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLDQEVA 376
Score = 66.6 bits (139), Expect(2) = 2e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -1 / +2
Query: 688 KMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
KMV ILCNDCGA S V+FH++A KC C SYNTR+
Sbjct: 407 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTRE 511
>gb|BQ135330.1|BQ135330 LP10034 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-34,
mRNA sequence
Length = 338
Score = 68.0 bits (142), Expect(2) = 5e-025
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = -1 / -1
Query: 841 CXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
C HTIH++CL F+CP+CS+S CDM+ AW++LD E+A
Sbjct: 329 CGHTIHLECLNEMRVHHHFSCPVCSRSACDMTDAWQKLDQEVA 201
Score = 66.6 bits (139), Expect(2) = 5e-025
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = -1 / -1
Query: 688 KMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
KMV ILCNDCGA S V+FH++A KC C SYNTR+
Sbjct: 170 KMVWILCNDCGATSSVRFHVLAQKCPGCSSYNTRE 66
>gb|AL505025.1|AL505025 AL505025 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C11V 5', mRNA sequence
Length = 478
Score = 105 bits (224), Expect = 3e-022
Identities = 41/58 (70%), Positives = 43/58 (74%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELATLSDS 698
+ N V PC HTIH KCLK CQFACPLCSKSVCDM KAWERLD ELATLS+S
Sbjct: 300 ESRNDVSVLPCGHTIHEKCLKEMKEHCQFACPLCSKSVCDMXKAWERLDAELATLSNS 473
>gb|AW983496.2|AW983496 HVSMEg0010N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0010N10f, mRNA sequence
Length = 884
Score = 62.5 bits (130), Expect(2) = 1e-021
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = -1 / +2
Query: 841 CXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
C HTIH++CL F+ P+CS+S CDM+ AW++LD E+A
Sbjct: 179 CGHTIHLECLNEMRVHHHFSGPVCSRSACDMTDAWQKLDQEVA 307
Score = 60.6 bits (126), Expect(2) = 1e-021
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -1 / +2
Query: 688 KMVRILCNDCGAISDVQFHLIAHKCQNCKSYNT 590
KMV ILCNDCGA S V+FH++A KC C YNT
Sbjct: 338 KMVWILCNDCGATSSVRFHVLAQKCPGCSFYNT 436
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 431,846,015
Number of Sequences: 312970
Number of extensions: 8037171
Number of successful extensions: 71399
Number of sequences better than 1.0e-020: 24
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10104897360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)