TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Y13733
(1516 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Aven... 77 1e-024
gb|CN816102.1|CN816102 HRO4517_A06_A11ZS5 Lib AA071E1X Aven... 31 0.57
emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA 31 0.57
gb|CN818951.1|CN818951 HRO4474_G11_N22ZS5 Lib AA070E1X Aven... 30 0.78
gb|CN817619.1|CN817619 HRO4463_C10_E19ZS5 Lib AA070E1X Aven... 29 1.5
gb|CN817747.1|CN817747 HRO4461_D06_H11ZS5 Lib AA070E1X Aven... 29 1.5
gb|CN820325.1|CN820325 HRO4418_B01_C02ZS5 Lib AA069E1X Aven... 29 1.5
gb|CN820973.1|CN820973 HRO4422_A11_A22ZS5 Lib AA069E1X Aven... 29 2.0
emb|X75778.1|ASTCPP1A A.sativa (Pewi) ASTCP-K36 mRNA for t ... 29 2.8
gb|AB128048.1|AB128048 AB128048 Avena sativa leaf 7-day-old... 28 3.8
gb|CN815825.1|CN815825 HRO4510_H06_O12ZS5 Lib AA071E1X Aven... 28 3.8
gb|CN818258.1|CN818258 HRO4470_E04_J08ZS5 Lib AA070E1X Aven... 28 3.8
gb|CN819071.1|CN819071 HRO4469_A10_B19ZS5 Lib AA070E1X Aven... 28 3.8
gb|AM071411.1|AM071411 AM071411 Avena sativa leaf 3 weeks o... 28 3.8
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 28 5.3
gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Aven... 28 5.3
gb|CN818088.1|CN818088 HRO4471_H12_O23ZS5 Lib AA070E1X Aven... 28 5.3
emb|AX458011.1| Sequence 3 from Patent WO0246387 28 5.3
gb|BE439110.1|BE439110 CDO358_WHE2F0052F ITEC CDO Oat cDNA ... 27 7.2
gb|CN814902.1|CN814902 HRO4503_G04_N07ZS5 Lib AA071E1X Aven... 27 7.2
gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Aven... 27 7.2
gb|CN816672.1|CN816672 HRO4523_D12_H23ZS5 Lib AA071E1X Aven... 27 7.2
gb|CN817793.1|CN817793 HRO4461_B01_D01ZS5 Lib AA070E1X Aven... 27 7.2
emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4) 27 7.2
emb|AX180458.1| Sequence 36 from Patent WO0146391 27 7.2
dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthran... 27 7.2
gb|CN815468.1|CN815468 HRO4512_A04_B08ZS5 Lib AA071E1X Aven... 27 9.9
gb|CN816145.1|CN816145 HRO4517_E03_I05ZS5 Lib AA071E1X Aven... 27 9.9
gb|CN817685.1|CN817685 HRO4461_G09_N17ZS5 Lib AA070E1X Aven... 27 9.9
gb|CN818155.1|CN818155 HRO4471_D07_G13ZS5 Lib AA070E1X Aven... 27 9.9
gb|CN820121.1|CN820121 HRO4411_D05_H09ZS5 Lib AA069E1X Aven... 27 9.9
gb|CN820710.1|CN820710 HRO4416_F06_L12ZS5 Lib AA069E1X Aven... 27 9.9
gb|CN821019.1|CN821019 HRO4422_F04_K08ZS5 Lib AA069E1X Aven... 27 9.9
gb|CN821364.1|CN821364 HRO4424_E02_J04ZS5 Lib AA069E1X Aven... 27 9.9
gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (... 27 9.9
emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3) 27 9.9
emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochr... 27 9.9
gb|L39777.1|ASTRASTL4A Avena sativa thaumatin-like pathogen... 27 9.9
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 27 9.9
emb|CQ798732.1| Sequence 1 from Patent EP1411127 27 9.9
gb|AY566266.1| Avena sativa lipase 1 mRNA, complete cds 27 9.9
>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_H05_P09, mRNA sequence
Length = 842
Score = 77.1 bits (162), Expect(2) = 1e-024
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +2 / -3
Query: 995 LGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVD 1174
LG ++++GS G +T E++ FC + IE++K+ Y+NEALERL DVRYRFV+D
Sbjct: 456 LGARSLSGSVTGGTKDTQEMMNFCAANKIYPDIELIKIDYINEALERLVNRDVRYRFVID 277
Query: 1175 VAGS 1186
+ S
Sbjct: 276 IESS 265
Score = 51.9 bits (107), Expect(2) = 1e-024
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2 / -3
Query: 728 KAMGHHVTVISSSSKKRAEAMDHLGADAYLVXXXXXXXXXXXXXXXYIIDTVPVHHPLEP 907
KA G VTV S+S KR EA+ LGAD +++ +I+DT HP +P
Sbjct: 720 KAFGLKVTVFSTSESKRDEAISLLGADNFVLSSDEKQMGSLKNSLHFIVDTASGDHPFDP 541
Query: 908 Y 910
Y
Sbjct: 540 Y 538
>gb|CN816102.1|CN816102 HRO4517_A06_A11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A06_A11, mRNA sequence
Length = 822
Score = 30.9 bits (61), Expect = 0.57
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1 / -3
Query: 1084 GEPLVDAELKHLSGLVDAADEAPRDGLPPQHHHGRHEAQGLADDAQQHEL 935
G P AEL H D A RDG+ P+H R Q H++
Sbjct: 436 GPPRPPAELPHRRHRRRRGDRASRDGVLPRHPRPRPRCQVRLPSPNPHDI 287
>emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA
Length = 1520
Score = 30.9 bits (61), Expect = 0.57
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2 / +3
Query: 657 SPKCFSGLYTVTPAHSSGAACSGARPAGIFTTNFWSTTMVEANPPCVGRPSV*TS 493
SP+C +T + S CSG++ ++T WS P PS TS
Sbjct: 1032 SPRCSPPRWTSSRGCSPSTRCSGSQLRRRWSTRTWSGCTTSPTSPSARTPSPSTS 1196
>gb|CN818951.1|CN818951 HRO4474_G11_N22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_G11_N22, mRNA sequence
Length = 411
Score = 30.4 bits (60), Expect = 0.78
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3 / +2
Query: 317 DTLKPRGGSWPGGCPCGRSRSRAPS 243
+T PR W G C C R RS PS
Sbjct: 200 ETPPPRRNDWRGPCSCPRFRSVIPS 274
>gb|CN817619.1|CN817619 HRO4463_C10_E19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_C10_E19, mRNA sequence
Length = 771
Score = 29.5 bits (58), Expect = 1.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1 / -2
Query: 1414 TYSTVVLLGVRQNVVWCQSHQQSGFAKCF 1500
TY VVL+ RQ+V HQ G CF
Sbjct: 482 TYYLVVLIYYRQSVDLLLEHQSRGICHCF 396
>gb|CN817747.1|CN817747 HRO4461_D06_H11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_D06_H11, mRNA sequence
Length = 584
Score = 29.5 bits (58), Expect = 1.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1 / -2
Query: 1414 TYSTVVLLGVRQNVVWCQSHQQSGFAKCF 1500
TY VVL+ RQ+V HQ G CF
Sbjct: 283 TYYLVVLIYYRQSVDLLLEHQSRGICHCF 197
>gb|CN820325.1|CN820325 HRO4418_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B01_C02, mRNA
sequence
Length = 528
Score = 29.5 bits (58), Expect = 1.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1 / -2
Query: 1414 TYSTVVLLGVRQNVVWCQSHQQSGFAKCF 1500
TY VVL+ RQ+V HQ G CF
Sbjct: 206 TYYLVVLIYYRQSVDLLLEHQSRGICHCF 120
>gb|CN820973.1|CN820973 HRO4422_A11_A22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_A11_A22, mRNA
sequence
Length = 482
Score = 29.0 bits (57), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / -2
Query: 230 EDVVVKVLYCGICHTDIHQ 286
E+VV +YC CH D HQ
Sbjct: 142 EEVVSLTIYCHCCHHDQHQ 86
>emb|X75778.1|ASTCPP1A A.sativa (Pewi) ASTCP-K36 mRNA for t complex polypeptide 1
Length = 2022
Score = 28.6 bits (56), Expect = 2.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2 / +2
Query: 2 RRSRGFLSQLRRRLATPPCAGSSPSPATRS 91
RRSRG RRR +PP + S S A S
Sbjct: 188 RRSRGCRGSTRRRPTSPPASPSRASSARPS 277
>gb|AB128048.1|AB128048 AB128048 Avena sativa leaf 7-day-old Avena sativa cDNA clone VRG92,
mRNA sequence
Length = 683
Score = 28.1 bits (55), Expect = 3.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3 / -3
Query: 575 GSSPQTSGRRPWWRR 531
GS P + GRRPW RR
Sbjct: 126 GSRPSS*GRRPWTRR 82
>gb|CN815825.1|CN815825 HRO4510_H06_O12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H06_O12, mRNA sequence
Length = 799
Score = 28.1 bits (55), Expect = 3.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3 / -2
Query: 284 GGCPCGRSRSRAPSPPH 234
G CP S S +PSPPH
Sbjct: 465 GSCPSS*SPSLSPSPPH 415
>gb|CN818258.1|CN818258 HRO4470_E04_J08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_E04_J08, mRNA sequence
Length = 587
Score = 28.1 bits (55), Expect = 3.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 531 NPPCVGRPSV*TSLYDQIFLLQYCS 457
+P CV P *T + +++ +Q+CS
Sbjct: 497 SPSCVADPCT*TIVLNKVICIQFCS 571
>gb|CN819071.1|CN819071 HRO4469_A10_B19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_A10_B19, mRNA sequence
Length = 589
Score = 28.1 bits (55), Expect = 3.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3 / -2
Query: 278 CPCGRSRSRAPSPP 237
CPC RSR P+PP
Sbjct: 60 CPCCRSRPSPPAPP 19
>gb|AM071411.1|AM071411 AM071411 Avena sativa leaf 3 weeks old, post-germination Avena sativa
cDNA clone ASCID1-1_019_a09, mRNA sequence
Length = 579
Score = 28.1 bits (55), Expect = 3.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 1036 RRDR*GASVLRRQGAHLPDRGGQD 1107
R R G S LRR+GA +P GQD
Sbjct: 258 RHRRGGGSRLRRRGARVPRLQGQD 329
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 27.6 bits (54), Expect = 5.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 302 RGGSWPGGCPCGRSRSRAPSPP 237
RG SWP P R +R+P P
Sbjct: 7 RGRSWPVSPPSSRGTTRSPPSP 72
>gb|CN816393.1|CN816393 HRO4520_C02_F04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C02_F04, mRNA sequence
Length = 741
Score = 27.6 bits (54), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2 / +2
Query: 2 RRSRGFLSQLRRRLATPPCAGSSPSPATRS 91
RR R S R AT PC +S +PATRS
Sbjct: 455 RRRRRSPSPGSRCSATCPCRTTSTTPATRS 544
>gb|CN818088.1|CN818088 HRO4471_H12_O23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H12_O23, mRNA sequence
Length = 871
Score = 27.6 bits (54), Expect = 5.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2 / +2
Query: 1022 FIGSIDETAEVLQFCVDKGLTSQIEVVKMG 1111
F+G++DE ++ L C + L I +VK G
Sbjct: 176 FVGNVDEASKQLVRCTYECLEKAIAIVKPG 265
>emb|AX458011.1| Sequence 3 from Patent WO0246387
Length = 1323
Score = 27.6 bits (54), Expect = 5.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2 / +2
Query: 422 CCRECSPCKANVEQYCNKKIWS 487
CCR SPC A + ++ WS
Sbjct: 806 CCRSTSPCTAQSDGARYRRTWS 871
>gb|BE439110.1|BE439110 CDO358_WHE2F0052F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO358_WHE2, mRNA sequence
Length = 413
Score = 27.2 bits (53), Expect = 7.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 613 VRWRDGVQPAEAL 651
VRWRDG+QP L
Sbjct: 235 VRWRDGLQPVRRL 197
>gb|CN814902.1|CN814902 HRO4503_G04_N07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G04_N07, mRNA sequence
Length = 730
Score = 27.2 bits (53), Expect = 7.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2 / +3
Query: 648 CFSGLYTVTPAHSSGAACSGARPAGIFTTNFW 553
C +GL+ T S+ S + G+F ++W
Sbjct: 339 CCAGLHVATSTGSAPCQSSASNTFGVFPCSYW 434
>gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B02_C04, mRNA sequence
Length = 446
Score = 27.2 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1 / -1
Query: 1510 LKNRNTWQIQIAGETDTTPH 1451
+KNR+TW QI + T PH
Sbjct: 308 IKNRSTWLQQIKCGSGTVPH 249
>gb|CN816672.1|CN816672 HRO4523_D12_H23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_D12_H23, mRNA sequence
Length = 874
Score = 27.2 bits (53), Expect = 7.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2 / +1
Query: 14 GFLSQLRRRLATPPCAGSSPSP 79
GF R +TPP AG +PSP
Sbjct: 733 GFAGSGGSRRSTPPWAGCAPSP 798
>gb|CN817793.1|CN817793 HRO4461_B01_D01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_B01_D01, mRNA sequence
Length = 717
Score = 27.2 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1 / -1
Query: 1327 CCLSAFLPFCSGL*DETMDGQFLMSD*ITTYSTVVL 1434
CC S F P CS + + FL S + Y V+L
Sbjct: 336 CCHS*FFPICSRIHGNNITEIFLHSADLEQYRRVIL 229
>emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4)
Length = 3705
Score = 27.2 bits (53), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2 / -2
Query: 29 LRRRLATPPCAGSSPSPATRSVVV 100
LRRR PP ++PS TRS+++
Sbjct: 1442 LRRRHTLPPYRRAAPSHLTRSMIL 1371
>emb|AX180458.1| Sequence 36 from Patent WO0146391
Length = 7340
Score = 27.2 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1 / +1
Query: 1516 FFLKNRNTWQIQIAGETDTTPHSGV 1442
F L NRNTW T TTP + +
Sbjct: 7207 FHLGNRNTWVASTPP*TSTTPTTAI 7281
>dbj|AB076983.1| Avena sativa AsHHT4 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 4, partial cds
Length = 1100
Score = 27.2 bits (53), Expect = 7.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 290 WPGGCPCGRSRSRAPSP 240
W G PC RS R P+P
Sbjct: 848 WTGCRPCSRSGGRTPAP 798
>gb|CN815468.1|CN815468 HRO4512_A04_B08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_A04_B08, mRNA sequence
Length = 480
Score = 26.7 bits (52), Expect = 9.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3 / +1
Query: 1373 SSQSPEQNGKKAERQQLVKEAERCTQTRPERTLHAAHRRGSTR 1245
SS+SP +NGK E + + RP RRG R
Sbjct: 64 SSRSPSENGKDPEEISKRRRLPGRERRRPSYARKPKRRRGRRR 192
>gb|CN816145.1|CN816145 HRO4517_E03_I05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E03_I05, mRNA sequence
Length = 498
Score = 26.7 bits (52), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2 / +3
Query: 624 TPAHSSGAACSGARPA 577
+P H+ G CS ARPA
Sbjct: 105 SPGHTCGTPCSKARPA 152
>gb|CN817685.1|CN817685 HRO4461_G09_N17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_G09_N17, mRNA sequence
Length = 625
Score = 26.7 bits (52), Expect = 9.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1 / +2
Query: 997 QHHHGRHEAQ 968
QHHHGRH Q
Sbjct: 71 QHHHGRHHEQ 100
>gb|CN818155.1|CN818155 HRO4471_D07_G13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D07_G13, mRNA sequence
Length = 777
Score = 26.7 bits (52), Expect = 9.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2 / -1
Query: 636 LYTVTPAHSSGAACSGARPAGIFTTNFWSTT 544
L + P AC+ PA + T W+TT
Sbjct: 342 LLLIIPRVRPRLACTAGTPASCYDTGSWTTT 250
>gb|CN820121.1|CN820121 HRO4411_D05_H09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_D05_H09, mRNA
sequence
Length = 676
Score = 26.7 bits (52), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2 / -3
Query: 222 VFLRV*E*GERCPVASLAAHPTTFLSDARL 133
VFLR + G+ CP+ SLA LS +L
Sbjct: 662 VFLRTGDDGKTCPLNSLAVLIILILSSTKL 573
>gb|CN820710.1|CN820710 HRO4416_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_F06_L12, mRNA
sequence
Length = 402
Score = 26.7 bits (52), Expect = 9.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 285 WWMSVWQIPQ*ST 247
WWM ++QIP+ ST
Sbjct: 118 WWMRMYQIPEFST 156
>gb|CN821019.1|CN821019 HRO4422_F04_K08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F04_K08, mRNA
sequence
Length = 712
Score = 26.7 bits (52), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3 / +2
Query: 461 AQRWPCRGCTRGS 423
A+RW CRGC G+
Sbjct: 179 AKRWRCRGCGSGA 217
>gb|CN821364.1|CN821364 HRO4424_E02_J04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_E02_J04, mRNA
sequence
Length = 563
Score = 26.7 bits (52), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2 / +2
Query: 2 RRSRGFLSQLRRRLATPPCAGSSPSPATRS 91
R+ RGF++ R RL+ P +SPS T S
Sbjct: 248 RKLRGFIAYWRSRLSVLPKLMNSPSRKTFS 337
>gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (phy3), complete cds
Length = 6746
Score = 26.7 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2 / -2
Query: 29 LRRRLATPPCAGSSPSPATRSVVV 100
LRRR PP ++PS TRS+++
Sbjct: 3742 LRRRHTFPPYRRAAPSHLTRSMIL 3671
>emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3)
Length = 3696
Score = 26.7 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2 / -2
Query: 29 LRRRLATPPCAGSSPSPATRSVVV 100
LRRR PP ++PS TRS+++
Sbjct: 1442 LRRRHTFPPYRRAAPSHLTRSMIL 1371
>emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochrome (AP5)
Length = 1623
Score = 26.7 bits (52), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2 / -1
Query: 29 LRRRLATPPCAGSSPSPATRSVV 97
LRRR PP ++PS TRS++
Sbjct: 1521 LRRRHTLPPYRRAAPSHLTRSMI 1453
>gb|L39777.1|ASTRASTL4A Avena sativa thaumatin-like pathogenesis-related protein (rastl-4)
mRNA, complete cds
Length = 744
Score = 26.7 bits (52), Expect = 9.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2 / -2
Query: 120 GIGAAGTTTTERVAGDGDE 64
GIGAAG ER+AG E
Sbjct: 491 GIGAAGIPALERIAGAAGE 435
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 26.7 bits (52), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 284 GGCPCGRSRSRAPSPP 237
GGC C +RSR+P P
Sbjct: 908 GGCACPCTRSRSPGRP 861
>emb|CQ798732.1| Sequence 1 from Patent EP1411127
Length = 3390
Score = 26.7 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2 / -2
Query: 29 LRRRLATPPCAGSSPSPATRSVVV 100
LRRR PP ++PS TRS+++
Sbjct: 1385 LRRRHTFPPYRRAAPSHLTRSMIL 1314
>gb|AY566266.1| Avena sativa lipase 1 mRNA, complete cds
Length = 1410
Score = 26.7 bits (52), Expect = 9.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3 / +2
Query: 560 TSGRRPWWRRIHPAW 516
T+GRRPWW + W
Sbjct: 641 TTGRRPWWYQGSRHW 685
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,727,373
Number of Sequences: 8143
Number of extensions: 130434
Number of successful extensions: 911
Number of sequences better than 10.0: 45
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 551282868
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)