TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 118 1e-035
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 118 bits (252), Expect(2) = 1e-035
Identities = 44/77 (57%), Positives = 60/77 (77%)
Frame = +2 / +2
Query: 317 LRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFA 496
L+KG W+ ED L++++ KHG G W++V K GL RCGKSCRLRW N+LRP+LK+GAF
Sbjct: 383 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 562
Query: 497 QDEEDLIIELHAVLGNR 547
+EE LII+LH+ +GN+
Sbjct: 563 PEEERLIIQLHSKMGNK 613
Score = 46.4 bits (95), Expect(2) = 1e-035
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
+++AA LPGRTDNEIKN WN+ IK
Sbjct: 617 ARMAANLPGRTDNEIKNYWNTRIK 688
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,553,946
Number of Sequences: 8143
Number of extensions: 102798
Number of successful extensions: 1131
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 227939466
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)