TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAO3g02.yg.2.1
(344 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Aven... 132 3e-032
gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Aven... 132 3e-032
>gb|CN816242.1|CN816242 HRO4518_E06_I12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E06_I12, mRNA sequence
Length = 723
Score = 132 bits (282), Expect = 3e-032
Identities = 58/102 (56%), Positives = 69/102 (67%)
Frame = +1 / +3
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLFDS + VSVL HTIH CLKEME+H + CPLCS M ERL L D
Sbjct: 72 YLFDSIDGVSVLRCGHTIHENCLKEMEKHRKLICPLCSKSVCDMSRAWERLDREIARLPD 251
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D +MVRILCN+C AI++V+F+LIA KCQ+ SYNTR I*+
Sbjct: 252 SYDGRMVRILCNECEAIAEVRFNLIALKCQSCQSYNTRRI*N 377
Score = 107 bits (228), Expect = 9e-025
Identities = 53/100 (53%), Positives = 60/100 (60%)
Frame = -1 / -3
Query: 314 IXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMXXX 135
I RVLY WHL AIK TS IA SLHNMRTIL S ES SLS M
Sbjct: 370 IRRVLYDWQLWHLSAIKLKRTSAIASHSLHNMRTILPS*ESGSLAISLSSLSHALDMSHT 191
Query: 134 XLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GH N +C SISF+ F+*+V* +T+T +ESNKY
Sbjct: 190 DLEQSGHINLRCFSISFKQFS*IV*PHRKTDTPSIESNKY 71
Score = 102 bits (218), Expect = 2e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / -1
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
F+S CCM SGT AQS+ A L+LP CIIC PF HRS P C
Sbjct: 375 FRSAECCMTGNSGT*AQSS*NAPLLLPHIHCIICEPFYHHRSLAVLLFPCPVSPMPLTCH 196
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ G+ T PFLS + HE YD A + H LS+RTST
Sbjct: 195 ILTWSRAGILTCDVSPFLSSSFHELYDHTAKQTHRLSSRTST 70
>gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C05_F10, mRNA sequence
Length = 851
Score = 132 bits (282), Expect = 3e-032
Identities = 58/102 (56%), Positives = 69/102 (67%)
Frame = +1 / +2
Query: 16 YLFDSTNDVSVLPXXHTIHVKCLKEMEEHCQFACPLCSXXXXXMXXXXERLXXXXXXLSD 195
YLFDS + VSVL HTIH CLKEME+H + CPLCS M ERL L D
Sbjct: 515 YLFDSIDGVSVLRCGHTIHENCLKEMEKHRKLICPLCSKSVCDMSRAWERLDREIARLPD 694
Query: 196 SCDHKMVRILCNDCGAISDVQFHLIAHKCQNXXSYNTRXI*S 321
S D +MVRILCN+C AI++V+F+LIA KCQ+ SYNTR I*+
Sbjct: 695 SYDGRMVRILCNECEAIAEVRFNLIALKCQSCQSYNTRRI*N 820
Score = 107 bits (228), Expect = 9e-025
Identities = 53/100 (53%), Positives = 60/100 (60%)
Frame = -1 / -3
Query: 314 IXRVLYXXXFWHLCAIKWNCTSDIAPQSLHNMRTIL*SQESDRXXXXXXSLSXXXXMXXX 135
I RVLY WHL AIK TS IA SLHNMRTIL S ES SLS M
Sbjct: 813 IRRVLYDWQLWHLSAIKLKRTSAIASHSLHNMRTILPS*ESGSLAISLSSLSHALDMSHT 634
Query: 134 XLEQRGHANWQCSSISFRHFT*MV*XXGRTETSFVESNKY 15
LEQ GH N +C SISF+ F+*+V* +T+T +ESNKY
Sbjct: 633 DLEQSGHINLRCFSISFKQFS*IV*PHRKTDTPSIESNKY 514
Score = 102 bits (218), Expect = 2e-023
Identities = 46/102 (45%), Positives = 54/102 (52%)
Frame = -2 / -1
Query: 319 FKSXGCCMXXXSGTCAQSNGTAHLILPRSRCIICGPFCDHRSQTEXXXXXXAFPXXXXCX 140
F+S CCM SGT AQS+ A L+LP CIIC PF HRS P C
Sbjct: 818 FRSAECCMTGNSGT*AQSS*NAPLLLPHIHCIICEPFYHHRSLAVLLFPCPVSPMPLTCH 639
Query: 139 XXXWSKGGMQTGSALPFLSGTLHEWYDXKAGRKHHLSNRTST 14
WS+ G+ T PFLS + HE YD A + H LS+RTST
Sbjct: 638 ILTWSRAGILTCDVSPFLSSSFHELYDHTAKQTHRLSSRTST 513
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,314,870
Number of Sequences: 8143
Number of extensions: 32826
Number of successful extensions: 2559
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 40
effective length of database: 1,241,767
effective search space used: 91890758
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)