TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Aven... 157 2e-039
>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
sequence
Length = 714
Score = 157 bits (337), Expect = 2e-039
Identities = 60/65 (92%), Positives = 64/65 (98%)
Frame = -2 / +2
Query: 196 LRTFHNQTDNVMCSYLPVFNSFNFTKGGLIQLNHGRPQPLQYAVNAAFLASLYSDYLEAA 17
LRTFHNQTDNVMCSYLPV+NSFNFTKGGLIQLNHGRPQPLQY VNAAFLASLY+DYL++A
Sbjct: 23 LRTFHNQTDNVMCSYLPVYNSFNFTKGGLIQLNHGRPQPLQYVVNAAFLASLYADYLDSA 202
Query: 16 DTPGW 2
DTPGW
Sbjct: 203 DTPGW 217
Score = 138 bits (295), Expect = 1e-033
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +3 / -1
Query: 3 HPGVSAASR*SLYKEARKAALTAY*SG*GLPWLSCINPPLVKLNELNTGKYEHMTLSVWL 182
HPGVSA SR*S YKEAR AALT Y*SG*G PWLSCINPP VKLNEL TGKYEHMTLSVWL
Sbjct: 216 HPGVSALSR*SAYKEARNAALTTY*SG*GRPWLSCINPPFVKLNELYTGKYEHMTLSVWL 37
Query: 183 WNVLS 197
WNVL+
Sbjct: 36 WNVLN 22
Score = 98.7 bits (209), Expect = 9e-022
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = -1 / +1
Query: 206 RRNTEDIPQPNRQRHVLVFTCIQFIQLHQRRINTAQPWKASTASVRCQRSFPCFFIQRLS 27
R+ +DIPQPN Q HVL+FT IQ IQLH+RRI+TAQPW AS SV CQRS PC F+ LS
Sbjct: 13 RKKIKDIPQPN*QCHVLIFTSIQLIQLHERRIDTAQPWTASATSVCCQRSIPCLFVC*LS 192
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,776,475
Number of Sequences: 8143
Number of extensions: 89122
Number of successful extensions: 996
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 229164947
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)