TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424417.2.1
(1137 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Aven... 91 1e-032
>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_H05_P09, mRNA sequence
Length = 842
Score = 91.3 bits (193), Expect(2) = 1e-032
Identities = 37/75 (49%), Positives = 52/75 (69%)
Frame = +2 / -3
Query: 335 LEIPPFDLIIGNKTLAGSCIGGMRDTQEMINVAAKHGVTADIELVAADYVNTAMERLAKA 514
+ + P L +G ++L+GS GG +DTQEM+N A + + DIEL+ DY+N A+ERL
Sbjct: 483 IRVHPATLNLGARSLSGSVTGGTKDTQEMMNFCAANKIYPDIELIKIDYINEALERLVNR 304
Query: 515 DVRYRFVIDIGNTLK 559
DVRYRFVIDI ++ K
Sbjct: 303 DVRYRFVIDIESSFK 259
Score = 64.3 bits (134), Expect(2) = 1e-032
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +2 / -3
Query: 125 STSPGKKQEALDRLGADAFVVSKDAEEMKAAASTMDGIINTVSANLTLAPYMGLLKPNGK 304
STS K+ EA+ LGAD FV+S D ++M + +++ I++T S + PY+ LLK G
Sbjct: 690 STSESKRDEAISLLGADNFVLSSDEKQMGSLKNSLHFIVDTASGDHPFDPYLALLKVGGV 511
Query: 305 MIMVGLP 325
M ++G P
Sbjct: 510 MALLGFP 490
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,112,211
Number of Sequences: 8143
Number of extensions: 148041
Number of successful extensions: 1083
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 403871130
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)