TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802544.2.1
(814 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Aven... 88 6e-023
>gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D05_H10, mRNA sequence
Length = 554
Score = 87.7 bits (185), Expect(2) = 6e-023
Identities = 35/83 (42%), Positives = 53/83 (63%)
Frame = -1 / +3
Query: 454 TIKSVDDPRALNKTLYIRPPENILTQNDVISKWEKLSGNVLEKIHIPADEFLASMKGTDL 275
TIK+VDDPR LNK LY+RPP N L+ N+++S WEK G L +++IP E L +++ +
Sbjct: 3 TIKAVDDPRTLNKILYLRPPSNTLSLNELVSLWEKKHGKTLARVYIPESEVLKNIQESPA 182
Query: 274 ANQAGVGHYYHIFYEGCLTNFEI 206
+ + ++ +G TNFEI
Sbjct: 183 PLNVALAICHSVWVKGDHTNFEI 251
Score = 34.5 bits (69), Expect(2) = 6e-023
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / +3
Query: 196 GADATLLYPEVQYTRMDEYMKR 131
G +AT LYP+V Y +DEY+ R
Sbjct: 264 GVEATELYPDVHYITVDEYLNR 329
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,837,928
Number of Sequences: 8143
Number of extensions: 155056
Number of successful extensions: 2536
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 276335726
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)