TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3099514.2.1
(547 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Aven... 148 6e-037
>gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G04_M07, mRNA sequence
Length = 630
Score = 148 bits (318), Expect = 6e-037
Identities = 58/76 (76%), Positives = 64/76 (84%)
Frame = +2 / +3
Query: 2 KQDPDHWVKISGAGLQRIYEKYTWKIYSERLMILAGVYGFWKYVSKLERRETRRYLEMFY 181
K DP +W K+S GL+RIYEKYTWK+YSERLM L GVYGFWKYVS LERRETRRYLEMFY
Sbjct: 102 KADPTYWDKMSEGGLKRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMFY 281
Query: 182 ILKFRELAKTVPLAID 229
LK+R LA VPLA+D
Sbjct: 282 ALKYRSLAAAVPLAVD 329
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,218,485
Number of Sequences: 8143
Number of extensions: 86194
Number of successful extensions: 3164
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 170341859
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)