TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3071507.2.1
(921 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Aven... 107 5e-040
>gb|CN815915.1|CN815915 HRO4511_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_H05_P09, mRNA sequence
Length = 842
Score = 107 bits (228), Expect(2) = 5e-040
Identities = 50/90 (55%), Positives = 60/90 (66%)
Frame = -1 / -3
Query: 681 AVKFGKAFGMKVTVISTSASKRQEAIENLGADEFLISRDEDQMKAATGTMDGIIDTVSAW 502
AVKFGKAFG+KVTV STS SKR EAI LGAD F++S DE QM + ++ I+DT S
Sbjct: 735 AVKFGKAFGLKVTVFSTSESKRDEAISLLGADNFVLSSDEKQMGSLKNSLHFIVDTASGD 556
Query: 501 HPITPLLALLKPLGQMVIVGAPSKPLELPA 412
HP P LALLK G M ++G P + PA
Sbjct: 555 HPFDPYLALLKVGGVMALLGFPGEIRVHPA 466
Score = 72.5 bits (152), Expect(2) = 5e-040
Identities = 27/60 (45%), Positives = 41/60 (68%)
Frame = -1 / -3
Query: 396 GGKGVAGNNVGSVRDCQAMLEFAGKHGIGAEVEVIKMDYVNTAMERLEKNDVRYRFVIDV 217
G + ++G+ G +D Q M+ F + I ++E+IK+DY+N A+ERL DVRYRFVID+
Sbjct: 453 GARSLSGSVTGGTKDTQEMMNFCAANKIYPDIELIKIDYINEALERLVNRDVRYRFVIDI 274
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,673,209
Number of Sequences: 8143
Number of extensions: 68674
Number of successful extensions: 691
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 320159894
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)