TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Aven... 99 7e-034
gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Aven... 73 4e-026
>gb|CN816985.1|CN816985 HRO4527_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_A03_B05, mRNA sequence
Length = 608
Score = 99.1 bits (211), Expect(2) = 7e-034
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +2 / +1
Query: 167 KNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEA 346
++GK+ LPL K A +ILVAG+HA+D+G QCGGWTI W G SG T GT+IL I+
Sbjct: 7 EDGKNLKETFLPLAKNAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQE 186
Query: 347 TVDPSTQVVYSESPDSGVL 403
+V T+VV+ + P ++
Sbjct: 187 SVGVETEVVHEQCPTDAII 243
Score = 60.3 bits (126), Expect(2) = 7e-034
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YA+VVVGE PYAE GD +L+IP G + V +V++ISGR LV++
Sbjct: 256 FSYAVVVVGEVPYAEWLGDRTDLSIPFNGSDLITRVASKVPTLVIVISGRPLVID 420
>gb|CN820177.1|CN820177 HRO4412_A07_B14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_A07_B14, mRNA
sequence
Length = 675
Score = 72.6 bits (153), Expect(2) = 4e-026
Identities = 28/47 (59%), Positives = 33/47 (70%)
Frame = +2 / +3
Query: 176 KSSYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTA 316
K+ LPL K A +ILVAG+HA+D+G QCGGWTI W G SG TA
Sbjct: 3 KNQKEMFLPLAKNAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITA 143
Score = 60.3 bits (126), Expect(2) = 4e-026
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YA+VVVGE PYAE GD +L+IP G + V +V++ISGR LV++
Sbjct: 244 FSYAVVVVGEVPYAEWLGDRTDLSIPFNGSDLITRVASKVPTLVIVISGRPLVID 408
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.316 0.137 0.438
Matrix: BLOSUM62
Number of Hits to DB: 5,056,155
Number of Sequences: 8143
Number of extensions: 62924
Number of successful extensions: 1581
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 38
effective length of database: 1,258,053
effective search space used: 193740162
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)