TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591297.2.1
(786 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Aven... 129 5e-033
gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Aven... 102 2e-025
>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
sequence
Length = 425
Score = 129 bits (277), Expect(2) = 5e-033
Identities = 50/67 (74%), Positives = 55/67 (82%)
Frame = -2 / +3
Query: 581 SYRGFHVDGCEASAEARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRD 402
SYR HVDGCEASAEA+F ATQGARWWDQ EF+DLD QYRRLA VR+ +TIYNYCTDR+
Sbjct: 12 SYRVLHVDGCEASAEAKFYATQGARWWDQKEFQDLDGEQYRRLAWVRKEHTIYNYCTDRE 191
Query: 401 RYGAAVP 381
RY P
Sbjct: 192 RYATMSP 212
Score = 26.3 bits (51), Expect(2) = 5e-033
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 392 AAVPPECARDRDV* 351
A + PEC RDRDV*
Sbjct: 198 ATMSPECKRDRDV* 239
>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
sequence
Length = 393
Score = 102 bits (218), Expect(3) = 2e-025
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = -2 / +1
Query: 536 ARFCATQGARWWDQPEFRDLDAAQYRRLADVRRRYTIYNYCTDRDRYGAAVP 381
A+FCATQGARWWDQ EF+DLD QYRRLA VR+ +TIYNYCTDR+RY P
Sbjct: 13 AKFCATQGARWWDQKEFQDLDGEQYRRLAWVRKEHTIYNYCTDRERYTTMSP 168
Score = 24.4 bits (47), Expect(3) = 2e-025
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / +1
Query: 380 PECARDRDV* 351
PEC RDRDV*
Sbjct: 166 PECKRDRDV* 195
Score = 22.1 bits (42), Expect(3) = 2e-025
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1 / +1
Query: 51 VYLYNFLLEKKKKK 10
VYLY+ + KKKKK
Sbjct: 349 VYLYDRVFCKKKKK 390
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,437,637
Number of Sequences: 8143
Number of extensions: 107096
Number of successful extensions: 1438
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 265379684
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)