TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 197 3e-051
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 197 bits (425), Expect = 3e-051
Identities = 78/110 (70%), Positives = 92/110 (83%)
Frame = -1 / +1
Query: 684 DAEREPSVFSKITRFEEELRAVLPQXXXXXXXXXXEGTAPVANRIADSRSFPLYRFVREE 505
+AE E +VFSKIT+FEEELR+ LP+ GTAP+ N I +SRSFPLYRFVREE
Sbjct: 7 EAEGEATVFSKITKFEEELRSALPREIEAARVAFETGTAPIPNLIKESRSFPLYRFVREE 186
Query: 504 LGCVFLTGERLKSPGEECNKVFVGISQGKLVDPMLECLKEWDGKPLPINI 355
LGCV+LTGE+L SPGEECNKVF+GISQGKL+DPMLECLKEW+G+PLPIN+
Sbjct: 187 LGCVYLTGEKLLSPGEECNKVFLGISQGKLIDPMLECLKEWNGEPLPINV 336
Score = 155 bits (334), Expect = 1e-038
Identities = 70/107 (65%), Positives = 70/107 (65%)
Frame = +2 / -1
Query: 365 GSGLPSHSLRHSSMGSTSLPWLMPTNTLLHSSPGDLSLSPVRNTQPSSSRTKRYSGNDRL 544
G G P HSLRHSSMGS SLPWLMP NTLLHSSPGD S SPVR TQPSSSRTKRYSG D L
Sbjct: 326 GRGSPFHSLRHSSMGSMSLPWLMPRNTLLHSSPGDRSFSPVRYTQPSSSRTKRYSGKDLL 147
Query: 545 SAIRFATGAVPXXXXXXXXXXXXXXXXXXXXXNLVILENTEGSRSAS 685
S IRF GAVP NLVILENT S SAS
Sbjct: 146 SLIRFGIGAVPVSKATRAASISRGSAERSSSSNLVILENTVASPSAS 6
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,230,578
Number of Sequences: 8143
Number of extensions: 136819
Number of successful extensions: 1156
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 428055030
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)