TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV566750.1|AV566750 AV566750 Arabidopsis thaliana green ... 140 5e-035
gb|AV561672.1|AV561672 AV561672 Arabidopsis thaliana green ... 140 9e-035
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 140 1e-034
gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis ... 140 2e-034
gb|AF422179.1| Arabidopsis thaliana chitinase-like protein ... 140 2e-034
ref|NM_100466.3| Arabidopsis thaliana ELP (ECTOPIC DEPOSITI... 140 2e-034
gb|AY034935.1| Arabidopsis thaliana putative class I chitin... 140 2e-034
gb|AF422178.1| Arabidopsis thaliana chitinase-like protein ... 140 2e-034
gb|BX840204.1|BX840204 BX840204 Arabidopsis thaliana Hormon... 140 2e-034
gb|AY113925.1| Arabidopsis thaliana putative class I chitin... 140 2e-034
gb|AF332458.1| Arabidopsis thaliana clone C00164 (e) putati... 140 2e-034
gb|BU634897.1|BU634897 012E04 Infected Arabidopsis Leaf Ara... 140 2e-034
gb|AV821677.1|AV821677 AV821677 RAFL4 Arabidopsis thaliana ... 140 2e-034
gb|BP560763.1|BP560763 BP560763 RAFL5 Arabidopsis thaliana ... 140 2e-034
gb|AV824487.1|AV824487 AV824487 RAFL6 Arabidopsis thaliana ... 140 2e-034
gb|BP561134.1|BP561134 BP561134 RAFL6 Arabidopsis thaliana ... 140 2e-034
gb|AV564866.1|AV564866 AV564866 Arabidopsis thaliana green ... 140 2e-034
gb|AV538493.1|AV538493 AV538493 Arabidopsis thaliana roots ... 140 2e-034
gb|AV555218.1|AV555218 AV555218 Arabidopsis thaliana green ... 140 2e-034
gb|AV527355.1|AV527355 AV527355 Arabidopsis thaliana aboveg... 140 2e-034
gb|AV527202.1|AV527202 AV527202 Arabidopsis thaliana aboveg... 140 2e-034
gb|AV525084.1|AV525084 AV525084 Arabidopsis thaliana aboveg... 140 2e-034
gb|AV528042.1|AV528042 AV528042 Arabidopsis thaliana aboveg... 140 2e-034
gb|BP798324.1|BP798324 BP798324 RAFL14 Arabidopsis thaliana... 137 6e-034
gb|T46353.1|T46353 9616 Lambda-PRL2 Arabidopsis thaliana cD... 138 7e-034
emb|BX815076.1|CNS0ACXQ Arabidopsis thaliana Full-length cD... 138 2e-033
gb|Z25683.1|Z25683 ATTS1148 Versailles-VB Arabidopsis thali... 138 3e-033
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 140 3e-032
gb|BP801048.1|BP801048 BP801048 RAFL14 Arabidopsis thaliana... 130 2e-031
gb|BP813573.1|BP813573 BP813573 RAFL19 Arabidopsis thaliana... 80 2e-031
gb|CB259939.1|CB259939 11-E011179-013-009-F04-T7R MPIZ-ADIS... 125 3e-031
dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosom... 125 4e-031
ref|NM_112568.3| Arabidopsis thaliana chitinase AT3G16920 m... 125 4e-031
gb|AF412071.1|AF412071 Arabidopsis thaliana AT3g16920/K14A1... 125 4e-031
gb|AY090261.1| Arabidopsis thaliana AT3g16920/K14A17_4 mRNA... 125 4e-031
gb|CB262119.1|CB262119 74-E8880-008-014-D19-pBl2 MPIZ-ADIS-... 125 4e-031
gb|AV822906.1|AV822906 AV822906 RAFL5 Arabidopsis thaliana ... 125 4e-031
gb|AV560538.1|AV560538 AV560538 Arabidopsis thaliana green ... 125 4e-031
gb|CB260131.1|CB260131 93-E011179-013-009-J24-T7R MPIZ-ADIS... 125 4e-031
gb|AV561654.1|AV561654 AV561654 Arabidopsis thaliana green ... 125 4e-031
gb|AV828315.1|AV828315 AV828315 RAFL9 Arabidopsis thaliana ... 110 7e-031
gb|BP561899.2|BP561899 BP561899 RAFL9 Arabidopsis thaliana ... 120 7e-031
gb|R30328.1|R30328 12933 Lambda-PRL2 Arabidopsis thaliana c... 134 2e-030
gb|H36971.1|H36971 15100 Lambda-PRL2 Arabidopsis thaliana c... 130 5e-030
gb|CC794762.1|CC794762 SALK_055713.38.85.x Arabidopsis thal... 118 2e-029
emb|BX821377.1|CNS0AA5H Arabidopsis thaliana Full-length cD... 118 5e-029
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 125 1e-027
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 125 1e-027
gb|AV527994.1|AV527994 AV527994 Arabidopsis thaliana aboveg... 118 1e-025
gb|BP864798.1|BP864798 BP864798 RAFL21 Arabidopsis thaliana... 98 3e-022
gb|BP812859.1|BP812859 BP812859 RAFL19 Arabidopsis thaliana... 95 2e-021
>gb|AV566750.1|AV566750 AV566750 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ249g03F 3', mRNA sequence
Length = 329
Score = 140 bits (301), Expect(3) = 5e-035
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 119 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 298
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 299 MGQKEMAAFL 328
Score = 27.2 bits (53), Expect(3) = 5e-035
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 83 KVCTQGWECS 112
Score = 18.0 bits (33), Expect(3) = 5e-035
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +3 / +3
Query: 204 WPWL 215
WPWL
Sbjct: 24 WPWL 35
>gb|AV561672.1|AV561672 AV561672 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ155f11F 3', mRNA sequence
Length = 427
Score = 140 bits (301), Expect(3) = 9e-035
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 119 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 298
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 299 MGQKEMAAFL 328
Score = 27.2 bits (53), Expect(3) = 9e-035
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 83 KVCTQGWECS 112
Score = 18.0 bits (33), Expect(3) = 9e-035
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +3 / +3
Query: 204 WPWL 215
WPWL
Sbjct: 24 WPWL 35
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 140 bits (301), Expect(2) = 1e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / -1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 1767840 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 1767661
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 1767660 MGQKEMAAFL 1767631
Score = 27.2 bits (53), Expect(2) = 1e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / -1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 1767876 KVCTQGWECS 1767847
>gb|AC009999.2|T20M3 Sequence of BAC T20M3 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 79554
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / -3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 46465 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 46286
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 46285 MGQKEMAAFL 46256
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / -3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 46501 KVCTQGWECS 46472
>gb|AF422179.1| Arabidopsis thaliana chitinase-like protein 1 (CTL1) gene, CTL1-ELP1
allele, complete cds
Length = 2570
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 1037 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 1216
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 1217 MGQKEMAAFL 1246
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 1001 KVCTQGWECS 1030
>ref|NM_100466.3| Arabidopsis thaliana ELP (ECTOPIC DEPOSITION OF LIGNIN IN PITH);
chitinase AT1G05850 (ELP) mRNA, complete cds
Length = 1446
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 304 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 483
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 484 MGQKEMAAFL 513
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 268 KVCTQGWECS 297
>gb|AY034935.1| Arabidopsis thaliana putative class I chitinase (At1g05850) mRNA,
complete cds
Length = 1322
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 304 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 483
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 484 MGQKEMAAFL 513
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 268 KVCTQGWECS 297
>gb|AF422178.1| Arabidopsis thaliana chitinase-like protein 1 (CTL1) mRNA,
CTL1-ELP1 allele, complete cds
Length = 1193
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 188 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 367
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 368 MGQKEMAAFL 397
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 152 KVCTQGWECS 181
>gb|BX840204.1|BX840204 BX840204 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH46ZD05 5PRIM,
mRNA sequence
Length = 1039
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 282 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 461
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 462 MGQKEMAAFL 491
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 246 KVCTQGWECS 275
>gb|AY113925.1| Arabidopsis thaliana putative class I chitinase (At1g05850) mRNA,
complete cds
Length = 997
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 154 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 333
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 334 MGQKEMAAFL 363
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 118 KVCTQGWECS 147
>gb|AF332458.1| Arabidopsis thaliana clone C00164 (e) putative class I chitinase
(At1g05850) mRNA, complete cds
Length = 966
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 154 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 333
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 334 MGQKEMAAFL 363
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 118 KVCTQGWECS 147
>gb|BU634897.1|BU634897 012E04 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 682
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 302 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 481
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 482 MGQKEMAAFL 511
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 266 KVCTQGWECS 295
>gb|AV821677.1|AV821677 AV821677 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-D04 5',
mRNA sequence
Length = 663
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 305 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 484
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 485 MGQKEMAAFL 514
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 269 KVCTQGWECS 298
>gb|BP560763.1|BP560763 BP560763 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-03-N08 5',
mRNA sequence
Length = 657
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 304 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 483
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 484 MGQKEMAAFL 513
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 268 KVCTQGWECS 297
>gb|AV824487.1|AV824487 AV824487 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-71-A05 5',
mRNA sequence
Length = 654
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 305 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 484
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 485 MGQKEMAAFL 514
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 269 KVCTQGWECS 298
>gb|BP561134.1|BP561134 BP561134 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-11-M05 5',
mRNA sequence
Length = 628
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 278 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 457
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 458 MGQKEMAAFL 487
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 242 KVCTQGWECS 271
>gb|AV564866.1|AV564866 AV564866 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ212d05F 3', mRNA sequence
Length = 623
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 119 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 298
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 299 MGQKEMAAFL 328
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 83 KVCTQGWECS 112
>gb|AV538493.1|AV538493 AV538493 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ117d02F 3', mRNA sequence
Length = 604
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 205 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 384
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 385 MGQKEMAAFL 414
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 169 KVCTQGWECS 198
>gb|AV555218.1|AV555218 AV555218 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ008d11F 3', mRNA sequence
Length = 580
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 282 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 461
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 462 MGQKEMAAFL 491
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 246 KVCTQGWECS 275
>gb|AV527355.1|AV527355 AV527355 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ35a05R 5', mRNA
sequence
Length = 531
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 132 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 311
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 312 MGQKEMAAFL 341
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 96 KVCTQGWECS 125
>gb|AV527202.1|AV527202 AV527202 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ31d08R 5', mRNA
sequence
Length = 508
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 110 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 289
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 290 MGQKEMAAFL 319
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 74 KVCTQGWECS 103
>gb|AV525084.1|AV525084 AV525084 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD16f06R 5', mRNA
sequence
Length = 495
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 277 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 456
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 457 MGQKEMAAFL 486
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 241 KVCTQGWECS 270
>gb|AV528042.1|AV528042 AV528042 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ49h02R 5', mRNA
sequence
Length = 486
Score = 140 bits (301), Expect(2) = 2e-034
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 266 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 445
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 446 MGQKEMAAFL 475
Score = 27.2 bits (53), Expect(2) = 2e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 230 KVCTQGWECS 259
>gb|BP798324.1|BP798324 BP798324 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-N12 5',
mRNA sequence
Length = 387
Score = 137 bits (294), Expect(3) = 6e-034
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+ +F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 174 SKYCCNQTISGYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 353
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 354 MGQKEMAAFL 383
Score = 27.2 bits (53), Expect(3) = 6e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 138 KVCTQGWECS 167
Score = 18.0 bits (33), Expect(3) = 6e-034
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +3 / +3
Query: 204 WPWL 215
WPWL
Sbjct: 78 WPWL 89
>gb|T46353.1|T46353 9616 Lambda-PRL2 Arabidopsis thaliana cDNA clone 141K24T7, mRNA
sequence
Length = 390
Score = 138 bits (295), Expect(2) = 7e-034
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 42 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 221
Query: 512 MQMMELCAFL 541
M + AFL
Sbjct: 222 MGQXXMAAFL 251
Score = 27.2 bits (53), Expect(2) = 7e-034
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 6 KVCTQGWECS 35
>emb|BX815076.1|CNS0ACXQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS30ZC09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1344
Score = 138 bits (296), Expect(2) = 2e-033
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KR+TP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 282 SKYCCNQTISDYFQVYQFEQLFSKRDTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 461
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 462 MGQKEMAAFL 491
Score = 25.8 bits (50), Expect(2) = 2e-033
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
++C +GWECS
Sbjct: 246 EVCTRGWECS 275
>gb|Z25683.1|Z25683 ATTS1148 Versailles-VB Arabidopsis thaliana cDNA clone VBVZE08
similar to Endochitinase precursor, basic., mRNA
sequence
Length = 387
Score = 138 bits (297), Expect(2) = 3e-033
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FIT AALFEP GF TTGGK
Sbjct: 44 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITXAALFEPLGFGTTGGKL 223
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 224 MGQKEMAAFL 253
Score = 24.4 bits (47), Expect(2) = 3e-033
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GW CS
Sbjct: 8 KVCTQGWXCS 37
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 140 bits (301), Expect = 3e-032
Identities = 54/70 (77%), Positives = 61/70 (87%)
Frame = +2 / -3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK
Sbjct: 1767963 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKL 1767784
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 1767783 MGQKEMAAFL 1767754
>gb|BP801048.1|BP801048 BP801048 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-18-C08 5',
mRNA sequence
Length = 400
Score = 130 bits (278), Expect(2) = 2e-031
Identities = 50/70 (71%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+ +F+VYQFE LF+KRN P+AHAVGFWDYQ+FI+AAAL EP GF TTGGK
Sbjct: 182 SKYCCNQTISGYFQVYQFEQLFSKRNIPIAHAVGFWDYQSFISAAALLEPLGFGTTGGKL 361
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 362 MGQKEMAAFL 391
Score = 27.2 bits (53), Expect(2) = 2e-031
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 146 KVCTQGWECS 175
>gb|BP813573.1|BP813573 BP813573 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-06-N14 5',
mRNA sequence
Length = 389
Score = 80.3 bits (169), Expect(4) = 2e-031
Identities = 31/38 (81%), Positives = 33/38 (86%)
Frame = +2 / +1
Query: 401 KRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQM 514
KRNTP+AHAVGFWDYQ+FITAAALFEP GF GGK M
Sbjct: 271 KRNTPIAHAVGFWDYQSFITAAALFEPLGFGNNGGKLM 384
Score = 55.1 bits (114), Expect(4) = 2e-031
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPV 418
SKYCCN TI+D+F+VYQFE LF+K P+
Sbjct: 203 SKYCCNQTISDYFQVYQFEQLFSKGTLPL 289
Score = 27.6 bits (54), Expect(4) = 2e-031
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +3
Query: 204 WPWLQWR 224
WPWLQWR
Sbjct: 108 WPWLQWR 128
Score = 27.2 bits (53), Expect(4) = 2e-031
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 166 KVCTQGWECS 195
>gb|CB259939.1|CB259939 11-E011179-013-009-F04-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770F049Q 5-PRIME, mRNA sequence
Length = 434
Score = 125 bits (267), Expect(2) = 3e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 175 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 354
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 355 QGMKEVAAFL 384
Score = 31.3 bits (62), Expect(2) = 3e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 136 KKLCDKGWECKGWSEYC 186
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17
Length = 92620
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / -3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 9464 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 9285
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 9284 QGMKEVAAFL 9255
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / -3
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 9503 KKLCDKGWECKGWSEYC 9453
>ref|NM_112568.3| Arabidopsis thaliana chitinase AT3G16920 mRNA, complete cds
Length = 1213
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 212 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 391
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 392 QGMKEVAAFL 421
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 173 KKLCDKGWECKGWSEYC 223
>gb|AF412071.1|AF412071 Arabidopsis thaliana AT3g16920/K14A17_4 mRNA, complete cds
Length = 1204
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 208 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 387
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 388 QGMKEVAAFL 417
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 169 KKLCDKGWECKGWSEYC 219
>gb|AY090261.1| Arabidopsis thaliana AT3g16920/K14A17_4 mRNA, complete cds
Length = 1002
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 178 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 357
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 358 QGMKEVAAFL 387
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 139 KKLCDKGWECKGWSEYC 189
>gb|CB262119.1|CB262119 74-E8880-008-014-D19-pBl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767D1914Q 5-PRIME, mRNA sequence
Length = 664
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 178 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 357
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 358 QGMKEVAAFL 387
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 139 KKLCDKGWECKGWSEYC 189
>gb|AV822906.1|AV822906 AV822906 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-13-A08 5',
mRNA sequence
Length = 657
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 208 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 387
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 388 QGMKEVAAFL 417
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 169 KKLCDKGWECKGWSEYC 219
>gb|AV560538.1|AV560538 AV560538 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ136d01F 3', mRNA sequence
Length = 598
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 190 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 369
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 370 QGMKEVAAFL 399
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 151 KKLCDKGWECKGWSEYC 201
>gb|CB260131.1|CB260131 93-E011179-013-009-J24-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770J249Q 5-PRIME, mRNA sequence
Length = 573
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 211 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 390
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 391 QGMKEVAAFL 420
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +1
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 172 KKLCDKGWECKGWSEYC 222
>gb|AV561654.1|AV561654 AV561654 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ155d02F 3', mRNA sequence
Length = 470
Score = 125 bits (267), Expect(2) = 4e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 171 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 350
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 351 QGMKEVAAFL 380
Score = 31.3 bits (62), Expect(2) = 4e-031
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 132 KKLCDKGWECKGWSEYC 182
>gb|AV828315.1|AV828315 AV828315 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-26-L03 5',
mRNA sequence
Length = 536
Score = 110 bits (234), Expect(3) = 7e-031
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALF 475
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALF
Sbjct: 305 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALF 448
Score = 36.3 bits (73), Expect(3) = 7e-031
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2 / +3
Query: 473 FEPQGFCTTGGKQMQMMELCAFL 541
FEP GF TTGGK M E+ AFL
Sbjct: 447 FEPLGFGTTGGKLMGQKEMAAFL 515
Score = 27.2 bits (53), Expect(3) = 7e-031
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 269 KVCTQGWECS 298
>gb|BP561899.2|BP561899 BP561899 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-30-H02 5',
mRNA sequence
Length = 509
Score = 120 bits (256), Expect(3) = 7e-031
Identities = 44/53 (83%), Positives = 50/53 (94%)
Frame = +2 / +3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGF 490
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF
Sbjct: 291 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGF 449
Score = 27.2 bits (53), Expect(3) = 7e-031
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 255 KVCTQGWECS 284
Score = 26.3 bits (51), Expect(3) = 7e-031
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2 / +1
Query: 488 FCTTGGKQMQMMELCAFL 541
F TTGGK M E+ AFL
Sbjct: 448 FGTTGGKLMGQKEMAAFL 501
>gb|R30328.1|R30328 12933 Lambda-PRL2 Arabidopsis thaliana cDNA clone 159K18T7, mRNA
sequence
Length = 384
Score = 134 bits (288), Expect = 2e-030
Identities = 52/69 (75%), Positives = 57/69 (82%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F VYQFE LF+KRNTP+AHAVGFWDYQ FITAAALF P GF TTGGK
Sbjct: 11 SKYCCNQTISDYFXVYQFEQLFSKRNTPIAHAVGFWDYQXFITAAALFXPLGFGTTGGKL 190
Query: 512 MQMMELCAF 538
M E+ AF
Sbjct: 191 MGQKEMAAF 217
>gb|H36971.1|H36971 15100 Lambda-PRL2 Arabidopsis thaliana cDNA clone 181E15T7, mRNA
sequence
Length = 551
Score = 130 bits (279), Expect(2) = 5e-030
Identities = 51/69 (73%), Positives = 56/69 (81%)
Frame = +2 / +2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
SKYCCN TI+D+F VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALF P GF TTGGK
Sbjct: 206 SKYCCNQTISDYFXVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFXPLGFGTTGGKL 385
Query: 512 MQMMELCAF 538
M E F
Sbjct: 386 MGQKEWLPF 412
Score = 22.1 bits (42), Expect(2) = 5e-030
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 299 KICNKGWECS 328
K+C +GWE S
Sbjct: 170 KVCTQGWEXS 199
>gb|CC794762.1|CC794762 SALK_055713.38.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_055713.38.85.x,
DNA sequence
Length = 397
Score = 118 bits (253), Expect(2) = 2e-029
Identities = 46/69 (66%), Positives = 56/69 (81%)
Frame = +2 / -2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DF + YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 234 SEYCCNHTISDFXETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 55
Query: 512 MQMMELCAF 538
M E+ AF
Sbjct: 54 QGMKEVGAF 28
Score = 31.3 bits (62), Expect(2) = 2e-029
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / -2
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 273 KKLCDKGWECKGWSEYC 223
>emb|BX821377.1|CNS0AA5H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL37ZD09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 521
Score = 118 bits (252), Expect(2) = 5e-029
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = +2 / -2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 196 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 17
Query: 512 MQMME 526
M E
Sbjct: 16 QGMKE 2
Score = 31.3 bits (62), Expect(2) = 5e-029
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2 / -2
Query: 296 EKICNKGWECSGSKYCC 346
+K+C+KGWEC G C
Sbjct: 235 KKLCDKGWECKGWSEYC 185
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 125 bits (267), Expect = 1e-027
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / -2
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 5754914 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 5754735
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 5754734 QGMKEVAAFL 5754705
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 125 bits (267), Expect = 1e-027
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = +2 / -3
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQ 511
S+YCCN TI+DFF+ YQFENLF+KRN+PVAHAVGFWDY++FITAAA ++P GF T G K
Sbjct: 5777670 SEYCCNHTISDFFETYQFENLFSKRNSPVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKL 5777491
Query: 512 MQMMELCAFL 541
M E+ AFL
Sbjct: 5777490 QGMKEVAAFL 5777461
>gb|AV527994.1|AV527994 AV527994 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ48h07R 5', mRNA
sequence
Length = 530
Score = 118 bits (252), Expect = 1e-025
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +2 / +2
Query: 359 TDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAF 538
+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FITAAALFEP GF TTGGK M E+ AF
Sbjct: 2 SDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMAAF 181
Query: 539 L 541
L
Sbjct: 182 L 184
>gb|BP864798.1|BP864798 BP864798 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-71-L21 5',
mRNA sequence
Length = 380
Score = 97.7 bits (207), Expect(3) = 3e-022
Identities = 34/42 (80%), Positives = 40/42 (95%)
Frame = +2 / +1
Query: 332 SKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFI 457
SKYCCN TI+D+F+VYQFE LF+KRNTP+AHAVGFWDYQ+FI
Sbjct: 253 SKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFI 378
Score = 27.2 bits (53), Expect(3) = 3e-022
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 299 KICNKGWECS 328
K+C +GWECS
Sbjct: 217 KVCTQGWECS 246
Score = 18.0 bits (33), Expect(3) = 3e-022
Identities = 4/4 (100%), Positives = 4/4 (100%)
Frame = +3 / +2
Query: 204 WPWL 215
WPWL
Sbjct: 158 WPWL 169
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 650,261,340
Number of Sequences: 1013581
Number of extensions: 7185033
Number of successful extensions: 166886
Number of sequences better than 1.0e-020: 68
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 30904166875
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)