TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023663.2.1
(613 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ028764.1| Arabidopsis thaliana synaptonemal complex ce... 64 1e-022
ref|NM_102076.3| Arabidopsis thaliana unknown protein AT1G2... 64 1e-022
gb|AV561606.1|AV561606 AV561606 Arabidopsis thaliana green ... 64 1e-022
gb|AV559194.1|AV559194 AV559194 Arabidopsis thaliana green ... 64 1e-022
gb|DQ028765.1| Arabidopsis thaliana synaptonemal complex ce... 64 2e-021
ref|NM_102078.1| Arabidopsis thaliana unknown protein AT1G2... 62 6e-021
>gb|DQ028764.1| Arabidopsis thaliana synaptonemal complex central region protein
ZYP1a (ZYP1a) mRNA, complete cds
Length = 2917
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = -2 / +3
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQK 382
H KVTH EYEVET NGR+TKRRKTR+ MF EP ++
Sbjct: 2469 HSKVTHREYEVETNNGRVTKRRKTRNTTMFEEPQRRR 2579
Score = 63.8 bits (133), Expect(2) = 1e-022
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2 / +3
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S A ANIG+LFSEGSLNPYADDPYAFD* L
Sbjct: 2637 SHARSANIGDLFSEGSLNPYADDPYAFD*SL 2729
>ref|NM_102076.3| Arabidopsis thaliana unknown protein AT1G22260 mRNA, complete cds
Length = 2846
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = -2 / +1
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQK 382
H KVTH EYEVET NGR+TKRRKTR+ MF EP ++
Sbjct: 2362 HSKVTHREYEVETNNGRVTKRRKTRNTTMFEEPQRRR 2472
Score = 63.8 bits (133), Expect(2) = 1e-022
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2 / +1
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S A ANIG+LFSEGSLNPYADDPYAFD* L
Sbjct: 2530 SHARSANIGDLFSEGSLNPYADDPYAFD*SL 2622
>gb|AV561606.1|AV561606 AV561606 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ154d08F 3', mRNA sequence
Length = 537
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = -2 / -2
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQK 382
H KVTH EYEVET NGR+TKRRKTR+ MF EP ++
Sbjct: 485 HSKVTHREYEVETNNGRVTKRRKTRNTTMFEEPQRRR 375
Score = 63.8 bits (133), Expect(2) = 1e-022
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2 / -2
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S A ANIG+LFSEGSLNPYADDPYAFD* L
Sbjct: 317 SHARSANIGDLFSEGSLNPYADDPYAFD*SL 225
>gb|AV559194.1|AV559194 AV559194 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112g11F 3', mRNA sequence
Length = 492
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = -2 / -2
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEPNSQK 382
H KVTH EYEVET NGR+TKRRKTR+ MF EP ++
Sbjct: 485 HSKVTHREYEVETNNGRVTKRRKTRNTTMFEEPQRRR 375
Score = 63.8 bits (133), Expect(2) = 1e-022
Identities = 26/31 (83%), Positives = 27/31 (87%)
Frame = -2 / -2
Query: 324 SRAHPANIGELFSEGSLNPYADDPYAFD*KL 232
S A ANIG+LFSEGSLNPYADDPYAFD* L
Sbjct: 317 SHARSANIGDLFSEGSLNPYADDPYAFD*SL 225
>gb|DQ028765.1| Arabidopsis thaliana synaptonemal complex central region protein
ZYP1b (ZYP1b) mRNA, complete cds
Length = 2874
Score = 63.8 bits (133), Expect(2) = 2e-021
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -2 / +2
Query: 315 HPANIGELFSEGSLNPYADDPYAFD*KL 232
H ANIG+LFSEGSLNPYADDPYAFD* L
Sbjct: 2606 HSANIGDLFSEGSLNPYADDPYAFD*SL 2689
Score = 60.6 bits (126), Expect(2) = 2e-021
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = -2 / +2
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEP 394
H KVTH EYEVET NGRI KRRKTR MF EP
Sbjct: 2426 HSKVTHREYEVETNNGRIPKRRKTRQTTMFQEP 2524
>ref|NM_102078.1| Arabidopsis thaliana unknown protein AT1G22275 mRNA, complete cds
Length = 2571
Score = 62.0 bits (129), Expect(2) = 6e-021
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = -2 / +1
Query: 315 HPANIGELFSEGSLNPYADDPYAFD* 238
H ANIG+LFSEGSLNPYADDPYAFD*
Sbjct: 2494 HSANIGDLFSEGSLNPYADDPYAFD* 2571
Score = 60.6 bits (126), Expect(2) = 6e-021
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = -2 / +1
Query: 492 HRKVTHPEYEVETANGRITKRRKTRSPVMFGEP 394
H KVTH EYEVET NGRI KRRKTR MF EP
Sbjct: 2314 HSKVTHREYEVETNNGRIPKRRKTRQTTMFQEP 2412
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,327,654,332
Number of Sequences: 1013581
Number of extensions: 19048965
Number of successful extensions: 183717
Number of sequences better than 1.0e-020: 6
length of database: 302,980,290
effective HSP length: 55
effective length of database: 247,233,335
effective search space used: 36590533580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)