BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA617154.1|CA617154 wl1n.pk0002.d10 wl1n Triticum aestiv... 305 2e-081
gb|CN011125.1|CN011125 WHE3880_C07_E14ZS Wheat Fusarium gra... 202 2e-050
gb|BG608342.1|BG608342 WHE2498_C04_F08ZS Triticum monococcu... 186 1e-045
gb|CD490390.1|CD490390 WHE2498_C04_F08ZT Triticum monococcu... 186 1e-045
gb|BQ839480.1|BQ839480 WHE4166_F02_L04ZS Wheat CS whole pla... 176 1e-042
gb|CA678771.1|CA678771 wlm4.pk0010.f2 wlm4 Triticum aestivu... 96 3e-018
gb|BQ902586.1|BQ902586 Ta03_06d01_R Ta03_AAFC_ECORC_Fusariu... 42 0.041
gb|BQ578715.1|BQ578715 WHE0308_H09_P18ZS Wheat unstressed s... 40 0.16
gb|CK195300.1|CK195300 FGAS003739 Triticum aestivum FGAS: L... 40 0.16
>gb|CA617154.1|CA617154 wl1n.pk0002.d10 wl1n Triticum aestivum cDNA clone wl1n.pk0002.d10
5' end, mRNA sequence
Length = 342
Score = 305 bits (154), Expect = 2e-081
Identities = 161/162 (99%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 1 cggtctcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cggtctcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcct 241
Query: 61 ccctgagctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 242 ccctgagctcctccccgaggagcagccccccgaggaggagatcttcgccgacgg-gccgc 300
Query: 121 cgacgtcgagggaagcgccatccgccgcatccaccacgcgct 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgacgtcgagggaagcgccatccgccgcatccaccacgcgct 342
>gb|CN011125.1|CN011125 WHE3880_C07_E14ZS Wheat Fusarium graminearum infected spike cDNA
library Triticum aestivum cDNA clone WHE3880_C07_E14,
mRNA sequence
Length = 468
Score = 202 bits (102), Expect = 2e-050
Identities = 222/262 (84%)
Strand = Plus / Plus
Query: 6 tcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctg 65
|||| ||||||||||||||| | |||||| |||| |||||| |||| | || |||| |
Sbjct: 144 tccttcccaagatcgactggagagcgctcttcgcagccaccagcgccgcggggttcccgg 203
Query: 66 agctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacg 125
|||||||| ||| ||||||||| ||||||| ||| |||||||||| |||||||| || |
Sbjct: 204 agctcctcgccgcggagcagccgcccgaggccgagctcttcgccgagggcgccgcggagg 263
Query: 126 tcgagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagg 185
||||||| ||||| ||||||||| |||||||||||||||||||| | || ||| ||||||
Sbjct: 264 tcgagggcagcgctatccgccgcctccaccacgcgctcctcgagatccacgtcgaggagg 323
Query: 186 gctccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaaca 245
|| |||||||||||||||||| | |||||| |||||||||| |||||| ||||||| |
Sbjct: 324 gcaccctcgtctgccccgacagcggccgctccttccccatcctgaagggcgtccccaata 383
Query: 246 tgatgctccacgaggacgaggt 267
|| | ||||| |||||||||||
Sbjct: 384 tgcttctccatgaggacgaggt 405
>gb|BG608342.1|BG608342 WHE2498_C04_F08ZS Triticum monococcum early reproductive apex cDNA
library Triticum monococcum cDNA clone WHE2498_C04_F08,
mRNA sequence
Length = 568
Score = 186 bits (94), Expect = 1e-045
Identities = 220/262 (83%)
Strand = Plus / Plus
Query: 6 tcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctg 65
|||| ||||||||||||||||| |||||| |||| |||||| |||| | || |||| |
Sbjct: 210 tccttcccaagatcgactggcgggcgctcttcgcagccaccagcgccgcggggttcccgg 269
Query: 66 agctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacg 125
|||||||| ||| ||||||||| ||||||| ||| |||||||||| |||||||| || |
Sbjct: 270 agctcctcgccgcggagcagccgcccgaggccgagctcttcgccgagggcgccgcggagg 329
Query: 126 tcgagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagg 185
||||||| ||||| ||||||||| |||||||||||||||||||| | || || | ||||
Sbjct: 330 tcgagggcagcgcgatccgccgcctccaccacgcgctcctcgagatccacgttgaagagg 389
Query: 186 gctccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaaca 245
|| |||||||||||||||| | | |||||| |||||||||| |||||| ||||||| |
Sbjct: 390 gcaccctcgtctgccccgatagcggccgctccttccccatcctgaagggcgtccccaata 449
Query: 246 tgatgctccacgaggacgaggt 267
|| | ||||| |||||||||||
Sbjct: 450 tgcttctccatgaggacgaggt 471
>gb|CD490390.1|CD490390 WHE2498_C04_F08ZT Triticum monococcum DV92 early reproductive apex
cDNA library Triticum monococcum cDNA clone
WHE2498_C04_F08, mRNA sequence
Length = 697
Score = 186 bits (94), Expect = 1e-045
Identities = 220/262 (83%)
Strand = Plus / Minus
Query: 6 tcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctg 65
|||| ||||||||||||||||| |||||| |||| |||||| |||| | || |||| |
Sbjct: 463 tccttcccaagatcgactggcgggcgctcttcgcagccaccagcgccgcggggttcccgg 404
Query: 66 agctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacg 125
|||||||| ||| ||||||||| ||||||| ||| |||||||||| |||||||| || |
Sbjct: 403 agctcctcgccgcggagcagccgcccgaggccgagctcttcgccgagggcgccgcggagg 344
Query: 126 tcgagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagg 185
||||||| ||||| ||||||||| |||||||||||||||||||| | || || | ||||
Sbjct: 343 tcgagggcagcgcgatccgccgcctccaccacgcgctcctcgagatccacgttgaagagg 284
Query: 186 gctccctcgtctgccccgacaccagccgctgcttccccatcaacaagggcatccccaaca 245
|| |||||||||||||||| | | |||||| |||||||||| |||||| ||||||| |
Sbjct: 283 gcaccctcgtctgccccgatagcggccgctccttccccatcctgaagggcgtccccaata 224
Query: 246 tgatgctccacgaggacgaggt 267
|| | ||||| |||||||||||
Sbjct: 223 tgcttctccatgaggacgaggt 202
>gb|BQ839480.1|BQ839480 WHE4166_F02_L04ZS Wheat CS whole plant cDNA library Triticum
aestivum cDNA clone WHE4166_F02_L04, mRNA sequence
Length = 492
Score = 176 bits (89), Expect = 1e-042
Identities = 188/221 (85%)
Strand = Plus / Plus
Query: 6 tcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctg 65
|||| ||||||||||||||||| |||||| |||||||||| |||| | || |||| |
Sbjct: 245 tccttcccaagatcgactggcgggcgctcttcgccgccacgagcgccgcggggttcccgg 304
Query: 66 agctcctccccgaggagcagccccccgaggaggagatcttcgccgacggcgccgccgacg 125
|||||||| ||| ||||||||| || |||| ||| |||||||||| |||||||| ||||
Sbjct: 305 agctcctcgccgcggagcagccgccggaggccgagctcttcgccgagggcgccgcggacg 364
Query: 126 tcgagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggagg 185
|||| || ||||| ||||||||| |||||||||||||||||||| | || ||||| ||||
Sbjct: 365 tcgaaggcagcgcgatccgccgcctccaccacgcgctcctcgagatccacgtccaagagg 424
Query: 186 gctccctcgtctgccccgacaccagccgctgcttccccatc 226
|| |||||||||||||||| | | |||||| ||||||||||
Sbjct: 425 gcaccctcgtctgccccgatagcggccgctccttccccatc 465
>gb|CA678771.1|CA678771 wlm4.pk0010.f2 wlm4 Triticum aestivum cDNA clone wlm4.pk0010.f2 5'
end, mRNA sequence
Length = 627
Score = 95.6 bits (48), Expect = 3e-018
Identities = 167/202 (82%), Gaps = 4/202 (1%)
Strand = Plus / Plus
Query: 6 tcctccccaagatcgactggcgcgcgctcgtcgccgccacccgcgcggtcggcctccctg 65
|||| ||||||||||||||||| |||||| ||||||||||| |||| | || |||| |
Sbjct: 216 tccttcccaagatcgactggcgggcgctcttcgccgccaccagcgccgcggggttcccgg 275
Query: 66 agctcctccccgaggagcagccccccgaggaggagatcttcg-ccgacggcgccgccgac 124
|||||||| ||| ||||||| ||||||| |||| |||||| || | |||||||| |||
Sbjct: 276 agctcctcgccgcanagcagccgcccgaggcggagctcttcgcccaagggcgccgcggac 335
Query: 125 gtcgagggaagcgccatccgccgcatccaccacgcgctcctcgaggttcatgtccaggag 184
||| | || ||||| || |||||| | || |||||||||||||| | ||| ||| |||||
Sbjct: 336 gtcnaaggcagcgcgattcgccgcct-caacacgcgctcctcga-gatcacgtcaaggag 393
Query: 185 ggctccctcgtctgccccgaca 206
||| |||||||||||||||||
Sbjct: 394 ggc-acctcgtctgccccgaca 414
>gb|BQ902586.1|BQ902586 Ta03_06d01_R
Ta03_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_h
eads Triticum aestivum cDNA clone Ta03_06d01, mRNA
sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.041
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 23 tggcgcgcgctcgtcgccgcc 43
|||||||||||||||||||||
Sbjct: 67 tggcgcgcgctcgtcgccgcc 47
>gb|BQ578715.1|BQ578715 WHE0308_H09_P18ZS Wheat unstressed seedling shoot cDNA library
Triticum aestivum cDNA clone WHE0308_H09_P18, mRNA
sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 gcagccccccgaggaggaga 101
||||||||||||||||||||
Sbjct: 55 gcagccccccgaggaggaga 74
>gb|CK195300.1|CK195300 FGAS003739 Triticum aestivum FGAS: Library 3 Gate 6 Triticum
aestivum cDNA, mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 103 cttcgccgacggcgccgccg 122
||||||||||||||||||||
Sbjct: 552 cttcgccgacggcgccgccg 533
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,192
Number of Sequences: 636343
Number of extensions: 179192
Number of successful extensions: 54269
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54250
Number of HSP's gapped (non-prelim): 10
length of query: 573
length of database: 367,240,239
effective HSP length: 19
effective length of query: 554
effective length of database: 355,149,722
effective search space: 196752945988
effective search space used: 196752945988
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)