BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI750794.1|BI750794 Ta01_09f09_R Ta01_AAFC_ECORC_Fusariu... 40 0.27
>gb|BI750794.1|BI750794 Ta01_09f09_R
Ta01_AAFC_ECORC_Fusarium_graminearum_inoculated_wheat_he
ads Triticum aestivum cDNA clone Ta01_09f09, mRNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.27
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 283 tcatcatcttcctcatcgtcaaattcctcctc 314
||||||||||||| ||| |||| |||||||||
Sbjct: 506 tcatcatcttcctgatcctcaacttcctcctc 537
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,968
Number of Sequences: 636343
Number of extensions: 194968
Number of successful extensions: 56832
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56830
Number of HSP's gapped (non-prelim): 2
length of query: 938
length of database: 367,240,239
effective HSP length: 20
effective length of query: 918
effective length of database: 354,513,379
effective search space: 325443281922
effective search space used: 325443281922
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)