BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL3a04.xg.2.1
(369 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF429782.1|CF429782 PH1_24_D04.b1_A002 Phosphorous-defic... 74 1e-011
>gb|CF429782.1|CF429782 PH1_24_D04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_24_D04_A002 3', mRNA sequence
Length = 497
Score = 73.8 bits (37), Expect = 1e-011
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 68 ggctacatgtaccacaagagaagcctagccgagctgaagnnnaaggaggccgaacaca 125
|||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||
Sbjct: 90 ggctacatgtaccacaagagaagcctagccaagctgaagatgaaggaggtcaaacaca 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,686
Number of Sequences: 832831
Number of extensions: 72686
Number of successful extensions: 18970
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18966
Number of HSP's gapped (non-prelim): 4
length of query: 369
length of database: 491,359,669
effective HSP length: 19
effective length of query: 350
effective length of database: 475,535,880
effective search space: 166437558000
effective search space used: 166437558000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)