BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN139844.1|CN139844 OX1_24_B03.g1_A002 Oxidatively-stres... 634 e-180
gb|AW672062.1|AW672062 LG1_354_G05.b1_A002 Light Grown 1 (L... 624 e-177
gb|BF655998.1|BF655998 FM1_42_F08.b1_A003 Floral-Induced Me... 446 e-123
gb|BG050179.1|BG050179 FM1_67_F11.b1_A003 Floral-Induced Me... 400 e-110
gb|CW435563.1|CW435563 fsbb001f151m11k0 Sorghum methylation... 303 1e-080
gb|BI098805.1|BI098805 IP1_33_D12.b1_A002 Immature pannicle... 232 3e-059
gb|BI098875.1|BI098875 IP1_34_D01.b1_A002 Immature pannicle... 232 3e-059
gb|BI098957.1|BI098957 IP1_35_D12.b1_A002 Immature pannicle... 232 3e-059
gb|CD226268.1|CD226268 CCC1_44_D06.g1_A007 Callus culture/c... 208 5e-052
gb|CD213280.1|CD213280 HS1_29_B09.g1_A012 Heat-shocked seed... 206 2e-051
gb|CD232318.1|CD232318 SS1_39_E09.g1_A012 Salt-stressed see... 206 2e-051
gb|CX608930.1|CX608930 ANR1_9_D06.g1_A002 Anaerobic roots S... 206 2e-051
gb|CX611279.1|CX611279 ANR1_23_E12.g1_A002 Anaerobic roots ... 198 5e-049
gb|CN149937.1|CN149937 WOUND1_65_G12.g1_A002 Wounded leaves... 145 6e-033
gb|CW448607.1|CW448607 fsbb001f182e24k0 Sorghum methylation... 141 1e-031
gb|CF074455.1|CF074455 FE1_24_A11.g1_A002 Iron-deficient se... 141 1e-031
gb|CW092858.1|CW092858 104_455_10999423_116_33051_022 Sorgh... 105 5e-021
gb|CN124270.1|CN124270 RHOH1_3_E09.g1_A002 Acid- and alkali... 100 3e-019
gb|BG273523.1|BG273523 OV2_26_G06.b1_A002 Ovary 2 (OV2) Sor... 96 5e-018
gb|CW202832.1|CW202832 104_629_11185306_116_36915_043 Sorgh... 86 5e-015
gb|AW563989.1|AW563989 LG1_281_D10.b1_A002 Light Grown 1 (L... 86 5e-015
gb|CD428558.1|CD428558 ETH1_27_H11.g1_A002 Ethylene-treated... 86 5e-015
gb|CW096980.1|CW096980 104_462_11002200_148_34353_082 Sorgh... 80 3e-013
gb|CW454158.1|CW454158 fsbb001f198h17k0 Sorghum methylation... 80 3e-013
gb|CL150110.1|CL150110 104_331_10778290_114_31355_226 Sorgh... 72 7e-011
gb|AF470066.1| Sorghum bicolor P-type R2R3 Myb protein (Myb... 72 7e-011
gb|CW180395.1|CW180395 104_594_11160615_148_36632_050 Sorgh... 70 3e-010
gb|CW202833.1|CW202833 104_629_11185306_148_37061_043 Sorgh... 70 3e-010
gb|BZ336394.1|BZ336394 hz34a02.g1 WGS-SbicolorF (JM107 adap... 68 1e-009
gb|CW300014.1|CW300014 104_783_11463423_148_36246_060 Sorgh... 68 1e-009
gb|CW480519.1|CW480519 fsbb001f239k04f0 Sorghum methylation... 68 1e-009
gb|CW487349.1|CW487349 fsbb001f253c15k0 Sorghum methylation... 68 1e-009
gb|CW131835.1|CW131835 104_514_11115886_116_34787_081 Sorgh... 66 5e-009
gb|BZ345658.1|BZ345658 hs87e07.b1 WGS-SbicolorF (JM107 adap... 60 3e-007
gb|CW128322.1|CW128322 104_509_11113940_116_34745_066 Sorgh... 56 4e-006
gb|CW257715.1|CW257715 104_723_11227485_116_35160_091 Sorgh... 56 4e-006
gb|CW364381.1|CW364381 fsbb001f036g09k0 Sorghum methylation... 56 4e-006
gb|CW378977.1|CW378977 fsbb001f057p23k0 Sorghum methylation... 56 4e-006
gb|CW140879.1|CW140879 104_531_11136014_116_34925_053 Sorgh... 54 2e-005
gb|CW148312.1|CW148312 104_542_11140354_116_35003_033 Sorgh... 54 2e-005
gb|CN138550.1|CN138550 OX1_64_A08.g1_A002 Oxidatively-stres... 54 2e-005
gb|CW140880.1|CW140880 104_531_11136014_148_34921_053 Sorgh... 52 7e-005
gb|CL151120.1|CL151120 104_333_10779023_116_31360_191 Sorgh... 50 3e-004
gb|CW036402.1|CW036402 104_267_10503738_114_30374 Sorghum m... 50 3e-004
gb|CW096979.1|CW096979 104_462_11002200_116_34349_082 Sorgh... 50 3e-004
gb|CW103828.1|CW103828 104_472_11012098_148_34437_037 Sorgh... 50 3e-004
gb|CW180394.1|CW180394 104_594_11160615_116_36636_050 Sorgh... 48 0.001
gb|CW256513.1|CW256513 104_721_11226833_148_35142_069 Sorgh... 48 0.001
gb|CW366211.1|CW366211 fsbb001f039b18f0 Sorghum methylation... 48 0.001
gb|CW373042.1|CW373042 fsbb001f049d12k0 Sorghum methylation... 48 0.001
gb|CW403563.1|CW403563 fsbb001f095f12f0 Sorghum methylation... 48 0.001
gb|CW041910.1|CW041910 104_275_10506824_115_30285 Sorghum m... 46 0.004
gb|CW215467.1|CW215467 104_647_11194554_116_37464_067 Sorgh... 46 0.004
gb|CW269199.1|CW269199 104_740_11401724_116_36231_076 Sorgh... 46 0.004
gb|CW269200.1|CW269200 104_740_11401724_148_36232_076 Sorgh... 46 0.004
gb|CW344541.1|CW344541 104_847_11488007_148_36198_092 Sorgh... 46 0.004
gb|CW419529.1|CW419529 fsbb001f124g17k0 Sorghum methylation... 46 0.004
gb|CX611399.1|CX611399 ANR1_24_A06.g1_A002 Anaerobic roots ... 46 0.004
gb|BG104097.1|BG104097 RHIZ2_40_E04.b1_A003 Rhizome2 (RHIZ2... 44 0.017
gb|CD235285.1|CD235285 SS1_28_H11.g1_A012 Salt-stressed see... 44 0.017
gb|CX616786.1|CX616786 GABR1_29_H12.g1_A002 GA- or brassino... 44 0.017
gb|CW087483.1|CW087483 104_432_10947659_114_32550_046 Sorgh... 42 0.066
gb|CW099615.1|CW099615 104_466_11003648_116_34383_022 Sorgh... 42 0.066
gb|CW136797.1|CW136797 104_521_11118569_148_34842_065 Sorgh... 42 0.066
gb|CW167237.1|CW167237 104_576_11153492_116_36486_074 Sorgh... 42 0.066
gb|CW201154.1|CW201154 104_626_11184419_148_36870_034 Sorgh... 42 0.066
gb|CW263810.1|CW263810 104_732_11230924_116_35305_012 Sorgh... 42 0.066
gb|CW317106.1|CW317106 104_808_11473239_116_35853_052 Sorgh... 42 0.066
gb|CW396674.1|CW396674 fsbb001f085d16f0 Sorghum methylation... 42 0.066
gb|CW422256.1|CW422256 fsbb001f131h06k0 Sorghum methylation... 42 0.066
gb|AF474130.1| Sorghum bicolor typical P-type R2R3 Myb prot... 42 0.066
gb|AF474131.1| Sorghum bicolor typical P-type R2R3 Myb prot... 42 0.066
gb|AF474133.1| Sorghum bicolor typical P-type R2R3 Myb prot... 42 0.066
gb|CW045801.1|CW045801 104_282_10509787_114_30228 Sorghum m... 40 0.26
gb|CW066615.1|CW066615 104_313_10523776_114_30148 Sorghum m... 40 0.26
gb|CW266637.1|CW266637 104_736_11232538_148_35286_039 Sorgh... 40 0.26
gb|CW310158.1|CW310158 104_799_11469571_116_37434_076 Sorgh... 40 0.26
gb|CW449861.1|CW449861 fsbb001f188d08k0 Sorghum methylation... 40 0.26
gb|CW454633.1|CW454633 fsbb001f199c24k0 Sorghum methylation... 40 0.26
gb|AY363131.1| Sorghum bicolor P-type R2R3 Myb protein (Myb... 40 0.26
>gb|CN139844.1|CN139844 OX1_24_B03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_24_B03_A002 5', mRNA sequence
Length = 745
Score = 634 bits (320), Expect = e-180
Identities = 414/448 (92%), Gaps = 7/448 (1%)
Strand = Plus / Plus
Query: 216 tatacattccgcagacctgtaagctctgtgagtttggttggagctcccaggttctgcatt 275
|||||||||| ||| |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 179 tatacattccacaggcctgtaagctctgtgaatttgg----agctctcaggttctgcatt 234
Query: 276 gcgttgagatggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggt 335
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 235 gcattgagatggggaggcattcttgctgctacaagcaaaagttgagaaaggggctctggt 294
Query: 336 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 354
Query: 396 gctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtgga 455
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 355 gttctgttcccaaactcgctgggctccaaagatgcggaaagagttgtaggctgaggtgga 414
Query: 456 taaactatctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctca 515
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 415 taaactatctgaggccagacctcaagagaggggcattctcccaagacgaagaagagctca 474
Query: 516 tcatcgagctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgc 575
|||| |||||||||||||||||||| ||||| | |||||||||||||| |||||||
Sbjct: 475 tcattgagctgcacgctgtcctcggaaacaggtg---gtctcaaattgcagcacagctgc 531
Query: 576 cagggaggactgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctga 635
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 532 cagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctga 591
Query: 636 ggcagaaaggcattgatcccaacaccca 663
||||||||||||||||||||||||||||
Sbjct: 592 ggcagaaaggcattgatcccaacaccca 619
Score = 101 bits (51), Expect = 8e-020
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 50 gaaatctcctatctgcagccatgcagttgctcaatcctggcctcagatgaagcccaacca 109
||||||||||||||||| || |||||||||||||| || ||||||| |||||||||| ||
Sbjct: 1 gaaatctcctatctgcaaccgtgcagttgctcaattctagcctcagctgaagcccaatca 60
Query: 110 ttcattggtatataagtcgctacaacctttgcaatttcccact 152
| || ||||||||||| || ||| |||||||||||||||||
Sbjct: 61 tccagtggtatataagctacttcaaactttgcaatttcccact 103
Score = 42.1 bits (21), Expect = 0.066
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 169 gaagaagctctgtgctaccggagaaggtgttcg 201
||||||||| ||||||| ||||||||||||||
Sbjct: 126 gaagaagcttcgtgctactggagaaggtgttcg 158
>gb|AW672062.1|AW672062 LG1_354_G05.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 624 bits (315), Expect = e-177
Identities = 409/443 (92%), Gaps = 7/443 (1%)
Strand = Plus / Plus
Query: 221 attccgcagacctgtaagctctgtgagtttggttggagctcccaggttctgcattgcgtt 280
||||| ||| |||||||||||||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 9 attccacaggcctgtaagctctgtgaatttgg----agctctcaggttctgcattgcatt 64
Query: 281 gagatggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccct 340
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 65 gagatggggaggcattcttgctgctacaagcaaaagttgagaaaggggctctggtcccct 124
Query: 341 gaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctct 400
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 125 gaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagttct 184
Query: 401 gttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaac 460
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 185 gttcccaaactcgctgggctccaaagatgcggaaagagttgtaggctgaggtggataaac 244
Query: 461 tatctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatc 520
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 245 tatctgaggccagacctcaagagaggggcattctcccaagacgaagaagagctcatcatt 304
Query: 521 gagctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgccaggg 580
|||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||
Sbjct: 305 gagctgcacgctgtcctcggaaacaggtg---gtctcaaattgcagcacagctgccaggg 361
Query: 581 aggactgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcag 640
||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 362 aggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcag 421
Query: 641 aaaggcattgatcccaacaccca 663
|||||||||||||||||||||||
Sbjct: 422 aaaggcattgatcccaacaccca 444
>gb|BF655998.1|BF655998 FM1_42_F08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 507
Score = 446 bits (225), Expect = e-123
Identities = 285/308 (92%), Gaps = 3/308 (0%)
Strand = Plus / Plus
Query: 356 ctcatgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgct 415
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9 ctcatgaatcacataacaaagcatggccatggctgctggagttctgttcccaaactcgct 68
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gggctccaaagatgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 128
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 129 ctcaagagaggggcattctcccaagacgaagaagagctcatcattgagctgcacgctgtc 188
Query: 536 ctcgggaacagangnnnntctcaaattgcagcgcagctgccagggaggactgataatgag 595
||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 189 ctcggaaacaggtg---gtctcaaattgcagcacagctgccagggaggactgataatgag 245
Query: 596 atcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaaggcattgatccc 655
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 246 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 305
Query: 656 aacaccca 663
||||||||
Sbjct: 306 aacaccca 313
>gb|BG050179.1|BG050179 FM1_67_F11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 464
Score = 400 bits (202), Expect = e-110
Identities = 245/259 (94%), Gaps = 4/259 (1%)
Strand = Plus / Plus
Query: 216 tatacattccgcagacctgtaagctctgtgagtttggttggagctcccaggttctgcatt 275
|||||||||| ||| |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 210 tatacattccacaggcctgtaagctctgtgaatttgg----agctctcaggttctgcatt 265
Query: 276 gcgttgagatggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggt 335
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 266 gcattgagatggggaggcattcttgctgctacaagcaaaagttgagaaaggggctctggt 325
Query: 336 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 385
Query: 396 gctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtgga 455
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 386 gttctgttcccaaactcgctgggctccaaagatgcggaaagagttgtaggctgaggtgga 445
Query: 456 taaactatctgaggccaga 474
|||||||||||||||||||
Sbjct: 446 taaactatctgaggccaga 464
Score = 131 bits (66), Expect = 9e-029
Identities = 108/122 (88%)
Strand = Plus / Plus
Query: 31 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 90
|||||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 13 cctttccttgctctccactgaaatctcctatctgcaaccgtgcagttgctcaattctagc 72
Query: 91 ctcagatgaagcccaaccattcattggtatataagtcgctacaacctttgcaatttccca 150
||||| |||||||||| ||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 73 ctcagctgaagcccaatcatccagtggtatataagctacttcaaactttgcaatttccca 132
Query: 151 ct 152
||
Sbjct: 133 ct 134
Score = 42.1 bits (21), Expect = 0.066
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 169 gaagaagctctgtgctaccggagaaggtgttcg 201
||||||||| ||||||| ||||||||||||||
Sbjct: 157 gaagaagcttcgtgctactggagaaggtgttcg 189
>gb|CW435563.1|CW435563 fsbb001f151m11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151m11, DNA
sequence
Length = 450
Score = 303 bits (153), Expect = 1e-080
Identities = 190/202 (94%), Gaps = 4/202 (1%)
Strand = Plus / Minus
Query: 216 tatacattccgcagacctgtaagctctgtgagtttggttggagctcccaggttctgcatt 275
|||||||||| ||| |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 253 tatacattccacaggcctgtaagctctgtgaatttgg----agctctcaggttctgcatt 198
Query: 276 gcgttgagatggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggt 335
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 197 gcattgagatggggaggcattcttgctgctacaagcaaaagttgagaaaggggctctggt 138
Query: 336 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgctgga 78
Query: 396 gctctgttcccaaactcgctgg 417
| ||||||||||||||||||||
Sbjct: 77 gttctgttcccaaactcgctgg 56
Score = 131 bits (66), Expect = 9e-029
Identities = 108/122 (88%)
Strand = Plus / Minus
Query: 31 cctttccttgctttccactgaaatctcctatctgcagccatgcagttgctcaatcctggc 90
|||||||||||| ||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 450 cctttccttgctctccactgaaatctcctatctgcaaccgtgcagttgctcaattctagc 391
Query: 91 ctcagatgaagcccaaccattcattggtatataagtcgctacaacctttgcaatttccca 150
||||| |||||||||| ||| || ||||||||||| || ||| |||||||||||||||
Sbjct: 390 ctcagctgaagcccaatcatccagtggtatataagctacttcaaactttgcaatttccca 331
Query: 151 ct 152
||
Sbjct: 330 ct 329
Score = 42.1 bits (21), Expect = 0.066
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 169 gaagaagctctgtgctaccggagaaggtgttcg 201
||||||||| ||||||| ||||||||||||||
Sbjct: 306 gaagaagcttcgtgctactggagaaggtgttcg 274
>gb|BI098805.1|BI098805 IP1_33_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 387
Score = 232 bits (117), Expect = 3e-059
Identities = 168/188 (89%), Gaps = 3/188 (1%)
Strand = Plus / Plus
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 9 ctcaagagaggggcattctcccaagacgaagaagagctcatcattgagctgcacgctgtc 68
Query: 536 ctcgggaacagangnnnntctcaaattgcagcgcagctgccagggaggactgataatgag 595
||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 ctcggaaacaggtgg---tctcaaattgcagcacagctgccagggaggactgataatgag 125
Query: 596 atcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaaggcattgatccc 655
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 126 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 185
Query: 656 aacaccca 663
||||||||
Sbjct: 186 aacaccca 193
>gb|BI098875.1|BI098875 IP1_34_D01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 249
Score = 232 bits (117), Expect = 3e-059
Identities = 168/188 (89%), Gaps = 3/188 (1%)
Strand = Plus / Plus
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 9 ctcaagagaggggcattctcccaagacgaagaagagctcatcattgagctgcacgctgtc 68
Query: 536 ctcgggaacagangnnnntctcaaattgcagcgcagctgccagggaggactgataatgag 595
||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 ctcggaaacaggtgg---tctcaaattgcagcacagctgccagggaggactgataatgag 125
Query: 596 atcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaaggcattgatccc 655
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 126 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 185
Query: 656 aacaccca 663
||||||||
Sbjct: 186 aacaccca 193
>gb|BI098957.1|BI098957 IP1_35_D12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 232 bits (117), Expect = 3e-059
Identities = 168/188 (89%), Gaps = 3/188 (1%)
Strand = Plus / Plus
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgagctgcacgctgtc 535
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct: 9 ctcaagagaggggcattctcccaagacgaagaagagctcatcattgagctgcacgctgtc 68
Query: 536 ctcgggaacagangnnnntctcaaattgcagcgcagctgccagggaggactgataatgag 595
||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 ctcggaaacaggtgg---tctcaaattgcagcacagctgccagggaggactgataatgag 125
Query: 596 atcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaaggcattgatccc 655
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 126 atcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatccc 185
Query: 656 aacaccca 663
||||||||
Sbjct: 186 aacaccca 193
>gb|CD226268.1|CD226268 CCC1_44_D06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_D06_A007 5', mRNA sequence
Length = 665
Score = 208 bits (105), Expect = 5e-052
Identities = 309/380 (81%), Gaps = 3/380 (0%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 176 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 235
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 236 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgtc 295
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| || || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct: 296 ccgaagcttgcagggcttcagaggtgtggcaagagctgcaggctgaggtggataaattac 355
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcatcgag 523
|||||||| ||||| || ||||| |||||| | || || ||||||||||| ||||| ||
Sbjct: 356 ctgaggcctgaccttaaaagaggtgcattctctcaggaggaagaagaccttatcattgaa 415
Query: 524 ctgcacgctgtcctcgggaacagangnnnntctcaaattgcagcgcagctgccagggagg 583
|| || ||||| || || ||||| | ||||| |||||| | | |||| || ||
Sbjct: 416 cttcatgctgtactgggaaacaggtg---gtctcagattgcaacaaggttgcctggaaga 472
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 473 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 532
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 533 ggcatcgaccccaacaccca 552
>gb|CD213280.1|CD213280 HS1_29_B09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_29_B09_A012 5', mRNA sequence
Length = 580
Score = 206 bits (104), Expect = 2e-051
Identities = 203/236 (86%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 287 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 346
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 347 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgtc 406
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| || || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct: 407 ccgaagcttgcagggcttcagaggtgtggcaagagctgcaggctgaggtggataaattac 466
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|||||||| ||||| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 467 ctgaggcctgaccttaaaagaggtgcattctctcaggaggaagaagaccttatcat 522
>gb|CD232318.1|CD232318 SS1_39_E09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_39_E09_A012 5', mRNA sequence
Length = 615
Score = 206 bits (104), Expect = 2e-051
Identities = 203/236 (86%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 285 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 344
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 345 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgtc 404
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| || || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct: 405 ccgaagcttgcagggcttcagaggtgtggcaagagctgcaggctgaggtggataaattac 464
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|||||||| ||||| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 465 ctgaggcctgaccttaaaagaggtgcattctctcaggaggaagaagaccttatcat 520
>gb|CX608930.1|CX608930 ANR1_9_D06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_D06_A002 5', mRNA sequence
Length = 831
Score = 206 bits (104), Expect = 2e-051
Identities = 203/236 (86%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 268 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 327
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 328 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgtc 387
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| || || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct: 388 ccgaagcttgcagggcttcagaggtgtggcaagagctgcaggctgaggtggataaattac 447
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|||||||| ||||| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 448 ctgaggcctgaccttaaaagaggtgcattctctcaggaggaagaagaccttatcat 503
>gb|CX611279.1|CX611279 ANR1_23_E12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_E12_A002 5', mRNA sequence
Length = 591
Score = 198 bits (100), Expect = 5e-049
Identities = 202/236 (85%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 265 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 324
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgtt 403
|| |||||||| |||||||| ||||| || ||||| || ||||||||||||||| ||||
Sbjct: 325 gaagatgagaagctcatgaaccacatgaccaagcacgggcatggctgctggagcactgtc 384
Query: 404 cccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactat 463
|| || || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct: 385 ccgaagcttgcagggcttcagaggtgtggcaagagctgcaggctgaggtggataaattac 444
Query: 464 ctgaggccagacctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|||||||| ||||| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 445 ctgaggcctgaccttaaaagaggtgcattctctcaggaggaagaagaccttatcat 500
>gb|CN149937.1|CN149937 WOUND1_65_G12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_65_G12_A002 5', mRNA sequence
Length = 748
Score = 145 bits (73), Expect = 6e-033
Identities = 184/221 (83%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||||||||||| |||||||| ||||| |||
Sbjct: 169 tgctgccacaagaagaagctgaggagagggctctggtcccccgaggaggacgagaagctc 228
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaaactcgctggg 418
||||| ||||| | || | |||||||||||||||||||| || ||||| || || ||
Sbjct: 229 atgaaccacattgcccagtacggccatggctgctggagctcagtgcccaagcttgcagga 288
Query: 419 cttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctc 478
|| | ||||| || ||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 289 ctcgagaggtgtggcaagagctgcaggctgaggtggataaactacctgaggccagacctc 348
Query: 479 aagagaggggcattcgcccaagacgaagaagacctcatcat 519
||||| || ||||| | ||||| || || |||||||||||
Sbjct: 349 aagaggggaacattctcacaagaggaggaggacctcatcat 389
>gb|CW448607.1|CW448607 fsbb001f182e24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182e24, DNA
sequence
Length = 806
Score = 141 bits (71), Expect = 1e-031
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 71 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 130
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 131 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgt 189
Score = 79.8 bits (40), Expect = 3e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||| ||||| || ||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 328 gggcttcagaggtgtggcaagagctgcaggctgaggtggataaattacctgaggcctgac 387
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 388 cttaaaagaggtgcattctctcaggaggaagaagaccttatcat 431
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 585 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 644
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 645 ggcatcgaccccaacaccca 664
>gb|CF074455.1|CF074455 FE1_24_A11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_24_A11_A002 5', mRNA sequence
Length = 691
Score = 141 bits (71), Expect = 1e-031
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 221 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 280
Query: 344 gaggatgagaaactcatgaatcacataacaaagcatggccatggctgctggagctctgt 402
|| |||||||| |||||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct: 281 gaagatgagaagctcatgaaccacataaccaagcacgggcatggctgctggagcactgt 339
Score = 79.8 bits (40), Expect = 3e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||| ||||| || ||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 478 gggcttcagaggtgtggcaagagctgcaggctgaggtggataaattacctgaggcctgac 537
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 538 cttaaaagaggtgcattctctcaggaggaagaagaccttatcat 581
>gb|CW092858.1|CW092858 104_455_10999423_116_33051_022 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
10999423, DNA sequence
Length = 538
Score = 105 bits (53), Expect = 5e-021
Identities = 59/61 (96%)
Strand = Plus / Minus
Query: 6 aagaaaaggagaggagtgcccctagcctttccttgctttccactgaaatctcctatctgc 65
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 66 aagaaaaggagaggagtgcccctaacctttccttgctctccactgaaatctcctatctgc 7
Query: 66 a 66
|
Sbjct: 6 a 6
>gb|CN124270.1|CN124270 RHOH1_3_E09.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_E09_A002 5', mRNA sequence
Length = 670
Score = 99.6 bits (50), Expect = 3e-019
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 284 atggggaggcattcttgctgctacaagcagaagctgagaaaggggctctggtcccctgag 343
||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 317 atggggaggcactcctgctgttacaagcagaagctgaggaaggggctctggtctcctgag 376
Query: 344 gaggatgagaaact 357
|| |||||||||||
Sbjct: 377 gaagatgagaaact 390
>gb|BG273523.1|BG273523 OV2_26_G06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 356
Score = 95.6 bits (48), Expect = 5e-018
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 332 tggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgc 391
||||| || |||||||| ||||| ||||| || |||| || | ||| ||||||||||||
Sbjct: 166 tggtcgccggaggaggacgagaagctcatcaagtacatcaccacgcacggccatggctgc 225
Query: 392 tggagctctgttcccaaactcgctgggcttcaaaggtgcggaaagagttgtaggctgagg 451
|||||||| || |||| || || ||||| || ||||||| ||||| || |||||||||
Sbjct: 226 tggagctcagtccccagacaagcagggctgcagcggtgcggcaagagctgcaggctgagg 285
Query: 452 tggataaactatctgaggccagacctcaagag 483
||||| ||||| |||||||| |||||||||||
Sbjct: 286 tggatcaactacctgaggccggacctcaagag 317
>gb|CW202832.1|CW202832 104_629_11185306_116_36915_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185306, DNA
sequence
Length = 615
Score = 85.7 bits (43), Expect = 5e-015
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 232 aggtgtggcaagagctgcaggctgaggtggataaactacctgaggccagacctcaagagg 173
Query: 485 ggggcattcgcccaagacgaagaagacctcatcat 519
|| ||||| | ||||| || || |||||||||||
Sbjct: 172 ggaacattctcacaagaggaggaggacctcatcat 138
Score = 83.8 bits (42), Expect = 2e-014
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||||||||||| |||||||| ||||| |||
Sbjct: 500 tgctgccacaagaagaagctgaggagagggctctggtcccccgaggaggacgagaagctc 441
Query: 359 atgaatcacataacaaagcatggccatggctgctggagctctgttcccaa 408
||||| ||||| | || | |||||||||||||||||||| || |||||
Sbjct: 440 atgaaccacattgcccagtacggccatggctgctggagctcagtgcccaa 391
>gb|AW563989.1|AW563989 LG1_281_D10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 378 atggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaaga 437
||||||||||||||||||| || || ||||| || || || || | ||||| || ||||
Sbjct: 37 atggccatggctgctggagttccgtccccaagctagcaggtctagagaggtgtgggaaga 96
Query: 438 gttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgccc 497
| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||| | |
Sbjct: 97 gctgcaggctgaggtggatcaactacctgaggccggacctcaagaggggagcattctcgc 156
Query: 498 aagacgaagaagacctcatcatc 520
| || || || ||||||||||||
Sbjct: 157 aggaagaggaggacctcatcatc 179
>gb|CD428558.1|CD428558 ETH1_27_H11.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_H11_A002 5', mRNA sequence
Length = 665
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 378 atggccatggctgctggagctctgttcccaaactcgctgggcttcaaaggtgcggaaaga 437
||||||||||||||||||| || || ||||| || || || || | ||||| || ||||
Sbjct: 163 atggccatggctgctggagttccgtccccaagctagcaggtctagagaggtgtgggaaga 222
Query: 438 gttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgccc 497
| || |||||||||||||| ||||| |||||||| ||||||||||| || |||||| | |
Sbjct: 223 gctgcaggctgaggtggatcaactacctgaggccggacctcaagaggggagcattctcgc 282
Query: 498 aagacgaagaagacctcatcatc 520
| || || || ||||||||||||
Sbjct: 283 aggaagaggaggacctcatcatc 305
>gb|CW096980.1|CW096980 104_462_11002200_148_34353_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002200, DNA
sequence
Length = 672
Score = 79.8 bits (40), Expect = 3e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||| ||||| || ||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 136 gggcttcagaggtgtggcaagagctgcaggctgaggtggataaattacctgaggcctgac 195
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 196 cttaaaagaggtgcattctctcaggaggaagaagaccttatcat 239
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 393 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 452
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 453 ggcatcgaccccaacaccca 472
>gb|CW454158.1|CW454158 fsbb001f198h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198h17, DNA
sequence
Length = 617
Score = 79.8 bits (40), Expect = 3e-013
Identities = 88/104 (84%)
Strand = Plus / Plus
Query: 416 gggcttcaaaggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagac 475
|||||||| ||||| || ||||| || ||||||||||||||||| || |||||||| |||
Sbjct: 158 gggcttcagaggtgtggcaagagctgcaggctgaggtggataaattacctgaggcctgac 217
Query: 476 ctcaagagaggggcattcgcccaagacgaagaagacctcatcat 519
|| || ||||| |||||| | || || ||||||||||| |||||
Sbjct: 218 cttaaaagaggtgcattctctcaggaggaagaagaccttatcat 261
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 415 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 474
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 475 ggcatcgaccccaacaccca 494
>gb|CL150110.1|CL150110 104_331_10778290_114_31355_226 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778290, DNA
sequence
Length = 531
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 23 aggtgtgggaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagagg 82
Query: 485 ggggcattcgcccaagacgaagaagacctcatcatc 520
|| |||||| | || || || || ||||||||||||
Sbjct: 83 ggagcattctcgcaggaagaggaggacctcatcatc 118
>gb|AF470066.1| Sorghum bicolor P-type R2R3 Myb protein (Myb27) gene, partial cds
Length = 1314
Score = 71.9 bits (36), Expect = 7e-011
Identities = 81/96 (84%)
Strand = Plus / Plus
Query: 425 aggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagaga 484
||||| || ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 983 aggtgtgggaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagagg 1042
Query: 485 ggggcattcgcccaagacgaagaagacctcatcatc 520
|| |||||| | || || || || ||||||||||||
Sbjct: 1043 ggagcattctcgcaggaagaggaggacctcatcatc 1078
Score = 60.0 bits (30), Expect = 3e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 307 caagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatca 366
|||| |||||||||| | ||| |||||||| || |||||||| || || ||||| || ||
Sbjct: 630 caagaagaagctgaggaggggcctctggtcgccggaggaggacgacaagctcatcaacca 689
Query: 367 cataacaaagcatggccatggctgctggag 396
||| | ||| |||||||||||||||||||
Sbjct: 690 cattgccaagtatggccatggctgctggag 719
>gb|CW180395.1|CW180395 104_594_11160615_148_36632_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160615, DNA
sequence
Length = 673
Score = 69.9 bits (35), Expect = 3e-010
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 434 aagagttgtaggctgaggtggataaactatctgaggccagacctcaagagaggggcattc 493
||||| || |||||||||||||| ||||| |||||||| ||||||||||| || ||||||
Sbjct: 657 aagagctgcaggctgaggtggatcaactacctgaggccggacctcaagaggggagcattc 598
Query: 494 gcccaagacgaagaagacctcatcatc 520
| || || || || ||||||||||||
Sbjct: 597 tcgcaggaagaggaggacctcatcatc 571
>gb|CW202833.1|CW202833 104_629_11185306_148_37061_043 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185306, DNA
sequence
Length = 592
Score = 69.9 bits (35), Expect = 3e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| ||||| |||||||||| | |||||||||||||| |||||||| ||||| |||
Sbjct: 500 tgctgccacaagaagaagctgaggagagggctctggtcccccgaggaggacgagaagctc 559
Query: 359 atgaatcacat 369
||||| |||||
Sbjct: 560 atgaaccacat 570
>gb|BZ336394.1|BZ336394 hz34a02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz34a02 5', DNA sequence
Length = 561
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 138 ggtgcggcaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagag 81
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 380 ggccatggctgctggagctc 399
||||||||||||||||||||
Sbjct: 394 ggccatggctgctggagctc 375
>gb|CW300014.1|CW300014 104_783_11463423_148_36246_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463423, DNA
sequence
Length = 706
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 72 ggtgcggcaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagag 129
>gb|CW480519.1|CW480519 fsbb001f239k04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239k04, DNA
sequence
Length = 576
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 33 ggtgcggcaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagag 90
>gb|CW487349.1|CW487349 fsbb001f253c15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253c15, DNA
sequence
Length = 692
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 426 ggtgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||||| ||||| || |||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 36 ggtgcggcaagagctgcaggctgaggtggatcaactacctgaggccggacctcaagag 93
>gb|CW131835.1|CW131835 104_514_11115886_116_34787_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115886, DNA
sequence
Length = 603
Score = 65.9 bits (33), Expect = 5e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 444 ggctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagacg 503
|||||| |||||| ||||| |||||||||||||||||||| || |||||| | || || |
Sbjct: 230 ggctgacgtggatcaactacctgaggccagacctcaagaggggagcattctcgcatgaag 289
Query: 504 aagaagacctcatcatc 520
| || ||||||||||||
Sbjct: 290 aggaggacctcatcatc 306
>gb|BZ345658.1|BZ345658 hs87e07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hs87e07 5', DNA sequence
Length = 593
Score = 60.0 bits (30), Expect = 3e-007
Identities = 75/90 (83%)
Strand = Plus / Plus
Query: 307 caagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactcatgaatca 366
|||| |||||||||| | ||| |||||||| || |||||||| || || ||||| || ||
Sbjct: 415 caagaagaagctgaggaggggcctctggtcgccggaggaggacgacaagctcatcaacca 474
Query: 367 cataacaaagcatggccatggctgctggag 396
||| | ||| |||||||||||||||||||
Sbjct: 475 cattgccaagtatggccatggctgctggag 504
>gb|CW128322.1|CW128322 104_509_11113940_116_34745_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113940, DNA
sequence
Length = 584
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| ||||| || |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 143 tgcggcaagagctgcaggctgagatggatcaactacctgaggcctgacctcaagag 198
>gb|CW257715.1|CW257715 104_723_11227485_116_35160_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227485, DNA
sequence
Length = 666
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| ||||| || |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 331 tgcggcaagagctgcaggctgagatggatcaactacctgaggcctgacctcaagag 276
>gb|CW364381.1|CW364381 fsbb001f036g09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036g09, DNA
sequence
Length = 727
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| ||||| || |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 130 tgcggcaagagctgcaggctgagatggatcaactacctgaggcctgacctcaagag 75
>gb|CW378977.1|CW378977 fsbb001f057p23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f057p23, DNA
sequence
Length = 677
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 428 tgcggaaagagttgtaggctgaggtggataaactatctgaggccagacctcaagag 483
||||| ||||| || |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 220 tgcggcaagagctgcaggctgagatggatcaactacctgaggcctgacctcaagag 165
>gb|CW140879.1|CW140879 104_531_11136014_116_34925_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136014, DNA
sequence
Length = 721
Score = 54.0 bits (27), Expect = 2e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| || |||||||| ||| | ||||||||||||||||||||| ||||| || |||
Sbjct: 438 tgctgcaaccagcagaaggtgaagagggggctctggtcccctgaggaagatgaaaagctc 379
Query: 359 atgaatcacataacaaagcatggccatggctgctggagc 397
|| | |||| || | |||||| ||||||||||||||
Sbjct: 378 atcagatacatcaccacccatggctatggctgctggagc 340
>gb|CW148312.1|CW148312 104_542_11140354_116_35003_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11140354, DNA
sequence
Length = 676
Score = 54.0 bits (27), Expect = 2e-005
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| || |||||||| ||| | ||||||||||||||||||||| ||||| || |||
Sbjct: 581 tgctgcaaccagcagaaggtgaagagggggctctggtcccctgaggaagatgaaaagctc 522
Query: 359 atgaatcacataacaaagcatggccatggctgctggagc 397
|| | |||| || | |||||| ||||||||||||||
Sbjct: 521 atcagatacatcaccacccatggctatggctgctggagc 483
>gb|CN138550.1|CN138550 OX1_64_A08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_A08_A002 5', mRNA sequence
Length = 876
Score = 54.0 bits (27), Expect = 2e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| || |||||||| ||| | ||||||||||||||||||||| ||||| || |||
Sbjct: 186 tgctgcaaccagcagaaggtgaagagggggctctggtcccctgaggaagatgaaaagctc 245
Query: 359 atgaatcacataacaaagcatggccatggctgctggagc 397
|| | |||| || | |||||| ||||||||||||||
Sbjct: 246 atcagatacatcaccacccatggctatggctgctggagc 284
>gb|CW140880.1|CW140880 104_531_11136014_148_34921_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11136014, DNA
sequence
Length = 669
Score = 52.0 bits (26), Expect = 7e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 299 tgctgctacaagcagaagctgagaaaggggctctggtcccctgaggaggatgagaaactc 358
|||||| || |||||||| ||| | ||||||||||||||||||||| ||||| || |||
Sbjct: 574 tgctgcaaccagcagaaggtgaagagggggctctggtcccctgaggaagatgaaaagctc 633
Query: 359 at 360
||
Sbjct: 634 at 635
>gb|CL151120.1|CL151120 104_333_10779023_116_31360_191 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779023, DNA
sequence
Length = 714
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 6 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 65
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 66 ggcatcgaccccaacaccca 85
>gb|CW036402.1|CW036402 104_267_10503738_114_30374 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503738, DNA
sequence
Length = 759
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 183 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 242
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 243 ggcatcgaccccaacaccca 262
>gb|CW096979.1|CW096979 104_462_11002200_116_34349_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002200, DNA
sequence
Length = 565
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Minus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 358 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 299
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 298 ggcatcgaccccaacaccca 279
>gb|CW103828.1|CW103828 104_472_11012098_148_34437_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11012098, DNA
sequence
Length = 623
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/80 (80%)
Strand = Plus / Plus
Query: 584 actgataatgagatcaagaatctatggaactcnnncatcaagnnnnnnctgaggcagaaa 643
|||||||| ||||| |||||||| |||||||| ||||||| || ||||||||
Sbjct: 30 actgataacgagattaagaatctctggaactcaagcatcaagaagaagctccggcagaaa 89
Query: 644 ggcattgatcccaacaccca 663
||||| || |||||||||||
Sbjct: 90 ggcatcgaccccaacaccca 109
>gb|CW180394.1|CW180394 104_594_11160615_116_36636_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160615, DNA
sequence
Length = 548
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 445 gctgaggtggataaactatctgaggccagacctcaagagaggggcattcgcccaagacga 504
||||| |||||| ||||| |||||||| ||||||||||| | |||||| | || || ||
Sbjct: 260 gctgacgtggatcaactacctgaggccggacctcaagaggagagcattctcgcaggaaga 319
Query: 505 agaagacctcatcatc 520
|| ||||||||||||
Sbjct: 320 ggaggacctcatcatc 335
>gb|CW256513.1|CW256513 104_721_11226833_148_35142_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226833, DNA
sequence
Length = 573
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 332 tggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgc 391
||||| || |||||||| ||||| ||||| || |||| || | ||| ||||||||||||
Sbjct: 119 tggtcgccggaggaggacgagaagctcatcaagtacatcaccacgcacggccatggctgc 60
Query: 392 tggagctc 399
||||||||
Sbjct: 59 tggagctc 52
>gb|CW366211.1|CW366211 fsbb001f039b18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039b18, DNA
sequence
Length = 534
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 332 tggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgc 391
||||| || |||||||| ||||| ||||| || |||| || | ||| ||||||||||||
Sbjct: 89 tggtcgccggaggaggacgagaagctcatcaagtacatcaccacgcacggccatggctgc 30
Query: 392 tggagctc 399
||||||||
Sbjct: 29 tggagctc 22
>gb|CW373042.1|CW373042 fsbb001f049d12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f049d12, DNA
sequence
Length = 657
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 332 tggtcccctgaggaggatgagaaactcatgaatcacataacaaagcatggccatggctgc 391
||||| || |||||||| ||||| ||||| || |||| || | ||| ||||||||||||
Sbjct: 366 tggtcgccggaggaggacgagaagctcatcaagtacatcaccacgcacggccatggctgc 425
Query: 392 tggagctc 399
||||||||
Sbjct: 426 tggagctc 433
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,299
Number of Sequences: 832831
Number of extensions: 170299
Number of successful extensions: 49526
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 79
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49376
Number of HSP's gapped (non-prelim): 136
length of query: 687
length of database: 491,359,669
effective HSP length: 19
effective length of query: 668
effective length of database: 475,535,880
effective search space: 317657967840
effective search space used: 317657967840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)