BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580138.2.1
(1484 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN137192.1|CN137192 OX1_55_F04.g1_A002 Oxidatively-stres... 1130 0.0
gb|CX609259.1|CX609259 ANR1_11_D03.g1_A002 Anaerobic roots ... 1031 0.0
gb|CN137108.1|CN137108 OX1_55_F04.b1_A002 Oxidatively-stres... 957 0.0
gb|CB925946.1|CB925946 ABA1_30_H09.g1_A012 Abscisic acid-tr... 898 0.0
gb|CX609176.1|CX609176 ANR1_11_D03.b1_A002 Anaerobic roots ... 777 0.0
gb|CN124260.1|CN124260 RHOH1_3_D10.g1_A002 Acid- and alkali... 775 0.0
gb|CN124187.1|CN124187 RHOH1_3_D10.b1_A002 Acid- and alkali... 664 0.0
gb|CN128232.1|CN128232 RHOH1_28_B02.b1_A002 Acid- and alkal... 664 0.0
gb|BM328906.1|BM328906 PIC1_31_A12.g1_A002 Pathogen-infecte... 658 0.0
gb|CD222099.1|CD222099 CCC1_2_H03.b1_A007 Callus culture/ce... 656 0.0
gb|CN128294.1|CN128294 RHOH1_28_B02.g1_A002 Acid- and alkal... 535 e-150
gb|CD222242.1|CD222242 CCC1_2_H03.g1_A007 Callus culture/ce... 525 e-147
gb|AW283673.1|AW283673 LG1_222_B03.g1_A002 Light Grown 1 (L... 476 e-132
gb|BM326916.1|BM326916 PIC1_4_G03.g1_A002 Pathogen-infected... 452 e-125
gb|CF771168.1|CF771168 DSBF1_14_H10.g1_A010 Drought-stresse... 420 e-115
gb|CB925852.1|CB925852 ABA1_30_H09.b1_A012 Abscisic acid-tr... 216 4e-054
gb|BZ342077.1|BZ342077 ic80d06.b1 WGS-SbicolorF (JM107 adap... 80 7e-013
gb|CL188811.1|CL188811 104_405_10901853_114_32452_087 Sorgh... 80 7e-013
gb|CW222653.1|CW222653 104_658_11202491_116_37177_044 Sorgh... 42 0.15
>gb|CN137192.1|CN137192 OX1_55_F04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_F04_A002 5', mRNA sequence
Length = 800
Score = 1130 bits (570), Expect = 0.0
Identities = 651/678 (96%)
Strand = Plus / Minus
Query: 669 catcaaagcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcat 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 catcaaagcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcat 738
Query: 729 tacaacatgcttgatgtacacgaaatcaatggacatgcttgctaggtaggccactgccca 788
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tacgacgtgcttgatgtacacgaaatcaatggacatgcttgctaggtaggccactgccca 678
Query: 789 ggtgtaagcagtcacagtgaattggttgtctgtgaaaacatagatcacacttccaccaag 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggtgtaagcagtcacagtgaattggttgtctgtgaaaacatagatcacacttccaccaag 618
Query: 849 tattgtggagagtgaaagccatgtcttgagcgatggccatggctgatgaagatacagcgt 908
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 617 tattgtggaaagtgaaagccatgtcttgagtgatggccatggctgatgaagatacagcgt 558
Query: 909 ctctccgatcgcgacaaatataggcacagcagagcggaacacaatgaaagtatccacatc 968
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctccccaatcgcgacaaatataggcacagcagagcggaacacaatgaaagtatccacatt 498
Query: 969 ggcatgaagcaggagttcactatttgtgaagatggagatgtagaacatcacagcagcagg 1028
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 497 ggcatgaagcaggagctcactatttgtggagatggagatatagaacatcacagcagcagg 438
Query: 1029 taagaacttccacattgtcctcaagttaagtccatcgtgctcaatgagcttgagctgtcc 1088
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct: 437 taagaacttccacattgtcctcagattaaggccgtcgtgctcaatgagcttgagctgtcc 378
Query: 1089 acataggagaactccagcaacactagtgaaatactgcagagctgtcagggctccaggata 1148
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 377 acataggagaactccagcaacactagtgaagtattgcagagctgtcagggctccaggata 318
Query: 1149 tggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaata 1208
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 317 tggaaatttcatgattgcccatttgttgatgatggagagcagcgacgctgataaacaata 258
Query: 1209 cccagcagccacaccatagattgaggcttgctgcataagagtgttcaacatgttactcca 1268
||| |||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct: 257 cccggcagccacaccatagactgaggcttgctgcagaagagtgttcaatgtgttactcca 198
Query: 1269 ggctccagttctctcggtagtacctgaaccctcaggtgaagtatcttcctttgaggtgtg 1328
|||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct: 197 ggctccagttctctgggtagtacctgaaccttcaggtgaagtatcttcttttgaggggtc 138
Query: 1329 tgagagattagacatctt 1346
||||||||||||||||||
Sbjct: 137 tgagagattagacatctt 120
>gb|CX609259.1|CX609259 ANR1_11_D03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_D03_A002 5', mRNA sequence
Length = 815
Score = 1031 bits (520), Expect = 0.0
Identities = 604/632 (95%)
Strand = Plus / Minus
Query: 715 agcccaatggtcattacaacatgcttgatgtacacgaaatcaatggacatgcttgctagg 774
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agcccaatggtcattacgacgtgcttgatgtacacgaaatcaatggacatgcttgctagg 756
Query: 775 taggccactgcccaggtgtaagcagtcacagtgaattggttgtctgtgaaaacatagatc 834
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 taggccactgctcaggtgtaagcagtcacagtgaattggttgtctgtgaaaacatagatc 696
Query: 835 acacttccaccaagtattgtggagagtgaaagccatgtcttgagcgatggccatggctga 894
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 695 acacttccaccaagtattgtggaaagtgaaagccatgtcttgagtgatggccatggctga 636
Query: 895 tgaagatacagcgtctctccgatcgcgacaaatataggcacagcagagcggaacacaatg 954
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgaagatacagcgtctccccaatcgcgacaaatataggcacagcagagcggaacacaatg 576
Query: 955 aaagtatccacatcggcatgaagcaggagttcactatttgtgaagatggagatgtagaac 1014
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 575 aaagtatccacattggcatgaagcaggagctcactatttgtgaagatggagatatagaac 516
Query: 1015 atcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgctcaatg 1074
||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 515 atcacagcagcaggtaagaacttccacattgtcctcagattaaggccgtcgtgctcaatg 456
Query: 1075 agcttgagctgtccacataggagaactccagcaacactagtgaaatactgcagagctgtc 1134
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 455 agcttgagctgtccacataggagaactccagcaacactagtgaagtattgcagagctgtc 396
Query: 1135 agggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagcgac 1194
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 395 agggctccaggatatggaaatttcatgattgcccatttgttgatgatggagagcagcgac 336
Query: 1195 gctgataaacaatacccagcagccacaccatagattgaggcttgctgcataagagtgttc 1254
||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 335 gctgataaacaatacccggcagccacaccatagactgaggcttgcggcagaagagtgttc 276
Query: 1255 aacatgttactccaggctccagttctctcggtagtacctgaaccctcaggtgaagtatct 1314
|| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 275 aatgtgttactccaggctccagttctctgggtagtacctgaaccttcaggtgaagtatct 216
Query: 1315 tcctttgaggtgtgtgagagattagacatctt 1346
|| ||||||| || ||||||||||||||||||
Sbjct: 215 tcttttgaggggtctgagagattagacatctt 184
>gb|CN137108.1|CN137108 OX1_55_F04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_55_F04_A002 3', mRNA sequence
Length = 786
Score = 957 bits (483), Expect = 0.0
Identities = 546/567 (96%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 508
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 448
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 447 atgcatatcaagagcccaatggtacccacaaaaaaggcatgcttgtcccaaataagcaaa 388
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 328
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 327 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 268
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 208
Query: 625 atctgatcaaattctcccattacgagaagctcgagtgggaatagcatcaaagcctcaagg 684
|||||||||||||||||||||| || ||||| || ||||||| ||||||||||||||||
Sbjct: 207 atctgatcaaattctcccattataaggagctcaagggggaataacatcaaagcctcaagg 148
Query: 685 ttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaacatgcttgatg 744
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 147 ttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacgacgtgcttgatg 88
Query: 745 tacacgaaatcaatggacatgcttgctaggtaggccactgcccaggtgtaagcagtcaca 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 tacacgaaatcaatggacatgcttgctaggtaggccactgcccaggtgtaagcagtcaca 28
Query: 805 gtgaattggttgtctgtgaaaacatag 831
|||||||||||||||||||||||||||
Sbjct: 27 gtgaattggttgtctgtgaaaacatag 1
Score = 182 bits (92), Expect = 6e-044
Identities = 135/147 (91%), Gaps = 3/147 (2%)
Strand = Plus / Minus
Query: 58 agaattgcacagtgataattaggtcccctccatgacttctaatatctaaaacatgggatt 117
||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 786 agaattgcatagtgataatttggtcccctccatgacttctaatatctaaaacataagatt 727
Query: 118 ttgtagctcctagttcatgactacattcatccatatgcttcttcccaag--tactagcca 175
|||||||||||||| || |||| |||||||||||||||||||| ||||| || ||||||
Sbjct: 726 ttgtagctcctagtccaggactgcattcatccatatgcttctttccaagtatattagcca 667
Query: 176 atacaaaaacgttca-ggtgaggctgt 201
||||||||||||||| |||||||||||
Sbjct: 666 atacaaaaacgttcagggtgaggctgt 640
>gb|CB925946.1|CB925946 ABA1_30_H09.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_30_H09_A012 5', mRNA sequence
Length = 684
Score = 898 bits (453), Expect = 0.0
Identities = 525/549 (95%)
Strand = Plus / Minus
Query: 798 agtcacagtgaattggttgtctgtgaaaacatagatcacacttccaccaagtattgtgga 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtcacagtgaattggttgtctgtgaaaacatagatcacacttccaccaagtattgtgga 625
Query: 858 gagtgaaagccatgtcttgagcgatggccatggctgatgaagatacagcgtctctccgat 917
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct: 624 aagtgaaagccatgtcttgagtgatggccatggctgatgaagatacagcgtctccccaat 565
Query: 918 cgcgacaaatataggcacagcagagcggaacacaatgaaagtatccacatcggcatgaag 977
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 cgcgacaaatataggcacagcagagcggaacacaatgaaagtatccacattggcatgaag 505
Query: 978 caggagttcactatttgtgaagatggagatgtagaacatcacagcagcaggtaagaactt 1037
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 caggagctcactatttgtgaagatggagatatagaacatcacagcagcaggtaagaactt 445
Query: 1038 ccacattgtcctcaagttaagtccatcgtgctcaatgagcttgagctgtccacataggag 1097
|||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 444 ccacattgtcctcagattaaggccgtcgtgctcaatgagcttgagctgtccacataggag 385
Query: 1098 aactccagcaacactagtgaaatactgcagagctgtcagggctccaggatatggaaattt 1157
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 384 aactccagcaacactagtgaagtattgcagagctgtcagggctccaggatatggaaattt 325
Query: 1158 catgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatacccagcagc 1217
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 324 catgattgcccatttgttgatgatggagagcagcgacgctgataaacaatacccggcagc 265
Query: 1218 cacaccatagattgaggcttgctgcataagagtgttcaacatgttactccaggctccagt 1277
||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 264 cacaccatagactgaggcttgctgcagaagagtgttcaatgtgttactccaggctccagt 205
Query: 1278 tctctcggtagtacctgaaccctcaggtgaagtatcttcctttgaggtgtgtgagagatt 1337
||||| ||||||||||||||| ||||||||||||||||| ||||||| || |||||||||
Sbjct: 204 tctctgggtagtacctgaaccttcaggtgaagtatcttcttttgaggggtctgagagatt 145
Query: 1338 agacatctt 1346
|||||||||
Sbjct: 144 agacatctt 136
>gb|CX609176.1|CX609176 ANR1_11_D03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_D03_A002 3', mRNA sequence
Length = 806
Score = 777 bits (392), Expect = 0.0
Identities = 446/464 (96%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 405
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 345
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 285
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 225
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 224 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 165
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 164 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 105
Query: 625 atctgatcaaattctcccattacgagaagctcgagtgggaatagcatcaaagcctcaagg 684
|||||||||||||||||||||| || ||||| || ||||||| ||||||||||||||||
Sbjct: 104 atctgatcaaattctcccattataaggagctcaagggggaataacatcaaagcctcaagg 45
Query: 685 ttgttgtatagcacaaggccccatgtgttcagcccaatggtcat 728
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ttgttgtatagcacaaggccccatgtgttcagcccaatggtcat 1
Score = 214 bits (108), Expect = 2e-053
Identities = 178/199 (89%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 735 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 676
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| |||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct: 675 atagtgataatttggtcccctccgtgacttctaatatctaaaacataagattttgttgct 616
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 615 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 556
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 555 acgttcagggtgaggctgt 537
>gb|CN124260.1|CN124260 RHOH1_3_D10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_3_D10_A002 5', mRNA sequence
Length = 646
Score = 775 bits (391), Expect = 0.0
Identities = 478/506 (94%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 841 ccaccaagtattgtggagagtgaaagccatgtcttgagcgatggccatggctgatgaaga 900
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 ccaccaagtat-gtggaaagtgaaagccatgtcttgagtgatggccatggctgatgaaga 585
Query: 901 tacagcgtctctccgatcgcgacaaatataggcacagcagagcggaacacaatgaaagta 960
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 584 tacagcgtctccccaatcgcgacanatataggcacagcagagcggaacacaatgaaagta 525
Query: 961 tccacatcggcatgaagcaggagttcactatttgtgaagatggagatgtagaacatcaca 1020
||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 524 tccacattggcatgaagcaggagctcactatttgtgaagatggagatatagaacatcaca 465
Query: 1021 gcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgctcaatgagcttg 1080
||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||
Sbjct: 464 gcagcaggtaagaacttccacattgtcttcagattaaggccgtcgtgctcaatgagcttg 405
Query: 1081 agctgtccacataggagaactccagcaacactagtgaaatactgcagagctgtcagggct 1140
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 404 agctgtccacataggagaactccagcaacactagtgaagtattgcagagctgtcagggct 345
Query: 1141 ccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgat 1200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 344 ccaggatatggaaatttcatgattgcccatttgttgatgatggagagcagcgacgctgat 285
Query: 1201 aaacaatacccagcagccacaccatagattgaggcttgctgcataagagtgttcaacatg 1260
||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 284 aaacaatacccggcagccacaccatagactgaggcttgctgcagaagagtgttcaatgtg 225
Query: 1261 ttactccaggctccagttctctcggtagtacctgaaccctcaggtgaagtatcttccttt 1320
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct: 224 ttactccaggctccagttctctgggtagtacctgaaccttcaggtgaagtatcttctttt 165
Query: 1321 gaggtgtgtgagagattagacatctt 1346
|||| || || |||||||||||||||
Sbjct: 164 gaggggtctgggagattagacatctt 139
>gb|CN124187.1|CN124187 RHOH1_3_D10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_3_D10_A002 3', mRNA sequence
Length = 717
Score = 664 bits (335), Expect = 0.0
Identities = 386/403 (95%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 348
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 288
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 287 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 228
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 168
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 167 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 108
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 107 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 48
Query: 625 atctgatcaaattctcccattacgagaagctcgagtgggaata 667
|||||||||||||||||||||| || ||||| || |||||||
Sbjct: 47 atctgatcaaattctcccattataaggagctcaagggggaata 5
Score = 230 bits (116), Expect = 3e-058
Identities = 180/199 (90%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 678 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 619
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 618 atagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 559
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 558 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 499
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 498 acgttcagggtgaggctgt 480
>gb|CN128232.1|CN128232 RHOH1_28_B02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_28_B02_A002 3', mRNA sequence
Length = 715
Score = 664 bits (335), Expect = 0.0
Identities = 386/403 (95%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 348
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 288
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 287 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 228
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 168
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 167 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 108
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 107 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 48
Query: 625 atctgatcaaattctcccattacgagaagctcgagtgggaata 667
|||||||||||||||||||||| || ||||| || |||||||
Sbjct: 47 atctgatcaaattctcccattataaggagctcaagggggaata 5
Score = 222 bits (112), Expect = 7e-056
Identities = 179/199 (89%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 678 atcctatcataacaattttgcgttacaaatgaaagccgcaatatagttataaagaattgc 619
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 618 ctagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 559
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 558 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 499
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 498 acgttcagggtgaggctgt 480
>gb|BM328906.1|BM328906 PIC1_31_A12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 690
Score = 658 bits (332), Expect = 0.0
Identities = 368/380 (96%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 321
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 261
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 201
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 141
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 140 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 81
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 80 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 21
Query: 625 atctgatcaaattctcccat 644
||||||||||||||||||||
Sbjct: 20 atctgatcaaattctcccat 1
Score = 230 bits (116), Expect = 3e-058
Identities = 180/199 (90%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 651 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 592
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 591 atagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 532
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 531 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 472
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 471 acgttcagggtgaggctgt 453
>gb|CD222099.1|CD222099 CCC1_2_H03.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_H03_A007 3', mRNA sequence
Length = 650
Score = 656 bits (331), Expect = 0.0
Identities = 385/403 (95%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 345
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 285
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 284 atgcatatcaagagcccaatggcacccacaaaagaggcatgcttgtcccaaataagcaaa 225
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 224 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 165
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgataatccaaacaggcatgagaga 564
||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct: 164 atagcccgtctgcaggagaatccaaagaaggatatcgatagtccaaacaggcatgagaga 105
Query: 565 gcaacagggaggaccacatcaaatgaaagccagtttgacactttggagctgtcgaccttc 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 104 gcaacagggaggaccacatcaaatgaaagccagtttgacacattggagctgtcgaccttc 45
Query: 625 atctgatcaaattctcccattacgagaagctcgagtgggaata 667
|||||||||||||||||||||| || ||||| || |||||||
Sbjct: 44 atctgatcaaattctcccattataaggagctcaagggggaata 2
Score = 196 bits (99), Expect = 4e-048
Identities = 145/158 (91%), Gaps = 3/158 (1%)
Strand = Plus / Minus
Query: 47 tatagtaataaagaattgcacagtgataattaggtcccctccatgacttctaatatctaa 106
|||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 634 tatagttataaagaattgcatagtgataatttggtcccctccatgacttctaatatctaa 575
Query: 107 aacatgggattttgtagctcctagttcatgactacattcatccatatgcttcttcccaag 166
||||| |||||||||||||||||| || |||| |||||||||||||||||||| |||||
Sbjct: 574 aacataagattttgtagctcctagtccaggactgcattcatccatatgcttctttccaag 515
Query: 167 --tactagccaatacaaaaacgttca-ggtgaggctgt 201
|| ||||||||||||||||||||| |||||||||||
Sbjct: 514 tatattagccaatacaaaaacgttcagggtgaggctgt 477
>gb|CN128294.1|CN128294 RHOH1_28_B02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_28_B02_A002 5', mRNA sequence
Length = 657
Score = 535 bits (270), Expect = e-150
Identities = 324/342 (94%)
Strand = Plus / Minus
Query: 1004 agatgtagaacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccat 1063
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 657 agatatagaacatcacagcagcaggtaagaacttccacattgtcctcagattaaggccgt 598
Query: 1064 cgtgctcaatgagcttgagctgtccacataggagaactccagcaacactagtgaaatact 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 597 cgtgctcaatgagcttgagctgtccacataggagaactccagcaacactagtgaagtatt 538
Query: 1124 gcagagctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcg 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 537 gcagagctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatgg 478
Query: 1184 agagcagcgacgctgataaacaatacccagcagccacaccatagattgaggcttgctgca 1243
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 477 agagcagcgacgctgataaacaatacccggcagccacaccatagactgaggcttgctgca 418
Query: 1244 taagagtgttcaacatgttactccaggctccagttctctcggtagtacctgaaccctcag 1303
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 417 gaagagtgttcaatgtgttactccaggctccagttctctgggtagtacctgaaccttcag 358
Query: 1304 gtgaagtatcttcctttgaggtgtgtgagagattagacatct 1345
||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 357 gtgaagtatcttcttttgaggggtctgagagattagacatct 316
Score = 83.8 bits (42), Expect = 4e-014
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 1342 atctttcagacgcttcctccagccctggtgaattcggtggtgtggggggacgccaaacga 1401
|||||||||||||||||||| || | |||||| |||||||||| ||||||||||||| ||
Sbjct: 131 atctttcagacgcttcctcctgctccggtgaagtcggtggtgt-gggggacgccaaagga 73
Query: 1402 t-gggcgcggcgatttatcgcggggtttcc 1430
| |||| | |||||||||||||||| ||||
Sbjct: 72 tggggcacagcgatttatcgcggggcttcc 43
>gb|CD222242.1|CD222242 CCC1_2_H03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_H03_A007 5', mRNA sequence
Length = 568
Score = 525 bits (265), Expect = e-147
Identities = 319/337 (94%)
Strand = Plus / Minus
Query: 1009 tagaacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtccatcgtgc 1068
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct: 564 tagaacatcacagcagcaggtaagaacttccacattgtcctcagattaaggccgtcgtgc 505
Query: 1069 tcaatgagcttgagctgtccacataggagaactccagcaacactagtgaaatactgcaga 1128
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 504 tcaatgagcttgagctgtccacataggagaactccagcaacactagtgaagtattgcaga 445
Query: 1129 gctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagc 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 gctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatggagagc 385
Query: 1189 agcgacgctgataaacaatacccagcagccacaccatagattgaggcttgctgcataaga 1248
||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||
Sbjct: 384 agcgacgctgataaacaatacccggcagccacaccacagactgaggcttgctgcagaaga 325
Query: 1249 gtgttcaacatgttactccaggctccagttctctcggtagtacctgaaccctcaggtgaa 1308
|||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 324 gtgttcaatgtgttactccaggctccagttctctgggtagtacctgaaccttcaggtgaa 265
Query: 1309 gtatcttcctttgaggtgtgtgagagattagacatct 1345
|||||||| ||||||| || |||||||||||||||||
Sbjct: 264 gtatcttcttttgaggggtctgagagattagacatct 228
Score = 54.0 bits (27), Expect = 4e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1342 atctttcagacgcttcctccagccctggtgaattcggtggtgt 1384
|||||||||||||||||||| || | |||||| ||||||||||
Sbjct: 43 atctttcagacgcttcctcctgctccggtgaagtcggtggtgt 1
>gb|AW283673.1|AW283673 LG1_222_B03.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 417
Score = 476 bits (240), Expect = e-132
Identities = 270/280 (96%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 221
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 161
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 160 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 101
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 100 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 41
Query: 505 atagctcgtctgcaggagaatccgaagaaggatattgata 544
||||| ||||||||||||||||| ||||||||||| ||||
Sbjct: 40 atagcccgtctgcaggagaatccaaagaaggatatcgata 1
Score = 73.8 bits (37), Expect = 4e-011
Identities = 59/64 (92%), Gaps = 3/64 (4%)
Strand = Plus / Minus
Query: 141 cattcatccatatgcttcttcccaag--tactagccaatacaaaaacgttca-ggtgagg 197
|||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||
Sbjct: 416 cattcatccatatgcttctttccaagtatattagccaatacaaaaacgttcagggtgagg 357
Query: 198 ctgt 201
||||
Sbjct: 356 ctgt 353
>gb|BM326916.1|BM326916 PIC1_4_G03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 570
Score = 452 bits (228), Expect = e-125
Identities = 252/260 (96%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 201
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 141
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 81
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagcagaa 504
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 80 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagcagag 21
Query: 505 atagctcgtctgcaggagaa 524
||||| ||||||||||||||
Sbjct: 20 atagcccgtctgcaggagaa 1
Score = 230 bits (116), Expect = 3e-058
Identities = 180/199 (90%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 531 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 472
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 471 atagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 412
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 411 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 352
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 351 acgttcagggtgaggctgt 333
>gb|CF771168.1|CF771168 DSBF1_14_H10.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_14_H10_A010 3', mRNA sequence
Length = 545
Score = 420 bits (212), Expect = e-115
Identities = 230/236 (97%)
Strand = Plus / Minus
Query: 265 ctctcttgaactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctctcttgcactccctgcatctgcagcaatttctgctgctcctcgtcgttctcttccttc 177
Query: 325 ggctcaaccttgggcgccttcggtttcgtggtggattgctggtagagcacaccacctgac 384
|||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggctcagccttgggtgcctttggtttcgtggtggattgctggtagagcacaccacctgac 117
Query: 385 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccagataagcaaa 444
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 116 atgcatatcaagagcccaatggtacccacaaaagaggcatgcttgtcccaaataagcaaa 57
Query: 445 ttaatcacaacagttaggagcttgttaactatgccaagcactgtgaacccagtagc 500
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 56 ttaatcacaacagttaggagcttgttcactatgccaagcactgtgaacccagtagc 1
Score = 230 bits (116), Expect = 3e-058
Identities = 180/199 (90%), Gaps = 3/199 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 507 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 448
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 atagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 388
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 387 cctagtccaggactgcattcatccatatgcttctttccaagtatattagccaatacaaaa 328
Query: 184 acgttca-ggtgaggctgt 201
||||||| |||||||||||
Sbjct: 327 acgttcagggtgaggctgt 309
>gb|CB925852.1|CB925852 ABA1_30_H09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_30_H09_A012 3', mRNA sequence
Length = 207
Score = 216 bits (109), Expect = 4e-054
Identities = 169/188 (89%), Gaps = 2/188 (1%)
Strand = Plus / Minus
Query: 6 atcctatcataacaattttgcgctacaaatggaagtggtagtatagtaataaagaattgc 65
|||||||||||||||||||||| |||||||| ||| | | |||||| ||||||||||||
Sbjct: 188 atcctatcataacaattttgcgttacaaatgaaagcagcaatatagttataaagaattgc 129
Query: 66 acagtgataattaggtcccctccatgacttctaatatctaaaacatgggattttgtagct 125
| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 128 atagtgataatttggtcccctccatgacttctaatatctaaaacataagattttgtagct 69
Query: 126 cctagttcatgactacattcatccatatgcttcttcccaag--tactagccaatacaaaa 183
|||||| || |||| |||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 68 cctagtccaggactgcattcatctatatgcttctttccaagtatattagccaatacaaaa 9
Query: 184 acgttcag 191
||||||||
Sbjct: 8 acgttcag 1
>gb|BZ342077.1|BZ342077 ic80d06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic80d06 5', DNA sequence
Length = 632
Score = 79.8 bits (40), Expect = 7e-013
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Minus
Query: 1344 ctttcagacgcttcctccagccctggtgaattcggtggtgtggggggacgccaaacgat- 1402
|||||||||||||||||| || | |||||| |||||||||| ||||||||||||| |||
Sbjct: 268 ctttcagacgcttcctcctgctccggtgaagtcggtggtgt-gggggacgccaaaggatg 210
Query: 1403 gggcgcggcgatttatcgcggggtttcc 1430
|||| | |||||||||||||||| ||||
Sbjct: 209 gggcacagcgatttatcgcggggcttcc 182
>gb|CL188811.1|CL188811 104_405_10901853_114_32452_087 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901853, DNA
sequence
Length = 588
Score = 79.8 bits (40), Expect = 7e-013
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1344 ctttcagacgcttcctccagccctggtgaattcggtggtgtggggggacgccaaacgat- 1402
|||||||||||||||||| || | |||||| |||||||||| ||||||||||||| |||
Sbjct: 99 ctttcagacgcttcctcctgctccggtgaagtcggtggtgt-gggggacgccaaaggatg 157
Query: 1403 gggcgcggcgatttatcgcggggtttcc 1430
|||| | |||||||||||||||| ||||
Sbjct: 158 gggcacagcgatttatcgcggggcttcc 185
>gb|CW222653.1|CW222653 104_658_11202491_116_37177_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202491, DNA
sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 230 ctttgtagttgtactttcttt 250
|||||||||||||||||||||
Sbjct: 32 ctttgtagttgtactttcttt 12
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 380,410
Number of Sequences: 832831
Number of extensions: 380410
Number of successful extensions: 101257
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101178
Number of HSP's gapped (non-prelim): 63
length of query: 1484
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1464
effective length of database: 474,703,049
effective search space: 694965263736
effective search space used: 694965263736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)