BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670899.2.1
(555 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD424081.1|CD424081 SA1_3_B08.b1_A002 Salicylic acid-tre... 751 0.0
gb|CX613101.1|CX613101 GABR1_6_F08.b1_A002 GA- or brassinol... 58 9e-007
gb|CX615067.1|CX615067 GABR1_18_A03.b1_A002 GA- or brassino... 58 9e-007
gb|CW231775.1|CW231775 104_681_11211304_148_37352_062 Sorgh... 56 4e-006
gb|CX607701.1|CX607701 ANR1_30_E12.b1_A002 Anaerobic roots ... 56 4e-006
gb|CX610678.1|CX610678 ANR1_20_E01.b1_A002 Anaerobic roots ... 56 4e-006
gb|CW176433.1|CW176433 104_589_11158484_116_36585_074 Sorgh... 50 2e-004
gb|CW417172.1|CW417172 fsbb001f120a20k0 Sorghum methylation... 48 9e-004
gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorgh... 46 0.003
gb|BE358912.1|BE358912 DG1_32_A08.g1_A002 Dark Grown 1 (DG1... 46 0.003
gb|CL699307.2|CL699307 SP__Ba0045J02.f SP__Ba Sorghum propi... 42 0.053
gb|BZ346714.1|BZ346714 hv83d08.b1 WGS-SbicolorF (JM107 adap... 40 0.21
gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum m... 40 0.21
gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation... 40 0.21
gb|CW473951.1|CW473951 fsbb001f229j01f0 Sorghum methylation... 40 0.21
gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1... 40 0.21
>gb|CD424081.1|CD424081 SA1_3_B08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_3_B08_A002 3', mRNA sequence
Length = 626
Score = 751 bits (379), Expect = 0.0
Identities = 422/435 (97%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 122 cgtccactgagagagttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtg 181
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cgtccactcagagagttagctatcgaacaacttgaggccgaagccgacgtcctcgcagtg 376
Query: 182 ccggacgtacggcttgacagcggcgacgtcgacgtccgtcttggccctgcacccgaggat 241
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct: 375 ccggacgtacggcttgacagcggctacgtcgacgtccctcttggctctgcacccgaggat 316
Query: 242 cggcggcgagtgcaggcacggctccacggacgtggaccggacgcacgcgacgtcggaggt 301
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 315 cggcggcgagtgcaggcacggctccatggacgtggaccggacgcacgccacgtcggaggt 256
Query: 302 ctccctgttccagtccggccggatcaggatccacggcttcacgccggcgaagctgtacgc 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctccctgttccagtccggccggagcaggatccacggcttcacgccggcgaagctgtacgc 196
Query: 362 gacgtagccgaaggtggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gacgtagccgaaggtggaccaggcgctcatcgtgatcttgtcgcagtagctgagcaggta 136
Query: 422 gatctcggccagcgccttctggttgtggtcgttggacgtgtactgctgctgctcctcgtg 481
|||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 135 gatctccgccagcgccttctggttgtgctcgttcgacgtgtactgctgctgctcctcgtg 76
Query: 482 gctgggctggaacaccgccacgatctccccactcttggtggggctctcgtagtacatgcc 541
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 75 gctcggctggaacaccgccacgatctccccgctcttggtggggctctcgtagtacatgcc 16
Query: 542 g-ggatcttctcgta 555
| |||||||||||||
Sbjct: 15 gcggatcttctcgta 1
Score = 69.9 bits (35), Expect = 2e-010
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 25 taccgcttaaacgaatacaacgaatctcgaaatgcctaa 63
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 538 taccgcataaacgaatacaacgaatctcgaaatgcctaa 500
>gb|CX613101.1|CX613101 GABR1_6_F08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_F08_A002 3', mRNA sequence
Length = 761
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 463 actgctgctgctcctcgtggctgggctggaaca 495
||||||| |||||||||||||||||||||||||
Sbjct: 193 actgctggtgctcctcgtggctgggctggaaca 161
>gb|CX615067.1|CX615067 GABR1_18_A03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_18_A03_A002 3', mRNA sequence
Length = 733
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 463 actgctgctgctcctcgtggctgggctggaaca 495
||||||| |||||||||||||||||||||||||
Sbjct: 167 actgctggtgctcctcgtggctgggctggaaca 135
>gb|CW231775.1|CW231775 104_681_11211304_148_37352_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11211304, DNA
sequence
Length = 657
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
||||||||||||||||||| |||||||| ||||||||||
Sbjct: 519 agctgagcaggtagatctccgccagcgctctctggttgtg 558
>gb|CX607701.1|CX607701 ANR1_30_E12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_30_E12_A002 3', mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
||||||||||||||||||| |||||||| ||||||||||
Sbjct: 263 agctgagcaggtagatctccgccagcgctctctggttgtg 224
>gb|CX610678.1|CX610678 ANR1_20_E01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_20_E01_A002 3', mRNA sequence
Length = 704
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
||||||||||||||||||| |||||||| ||||||||||
Sbjct: 290 agctgagcaggtagatctccgccagcgctctctggttgtg 251
>gb|CW176433.1|CW176433 104_589_11158484_116_36585_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158484, DNA
sequence
Length = 563
Score = 50.1 bits (25), Expect = 2e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 463 actgctgctgctcctcgtggctgggctggaaca 495
||||||| |||||||||||||||||||| ||||
Sbjct: 424 actgctggtgctcctcgtggctgggctgaaaca 392
>gb|CW417172.1|CW417172 fsbb001f120a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f120a20, DNA
sequence
Length = 773
Score = 48.1 bits (24), Expect = 9e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 409 agctgagcaggtagatctcggccagcgccttctggttgtg 448
||||||||||||||||||| || ||||| ||||||||||
Sbjct: 437 agctgagcaggtagatctccgcgagcgctctctggttgtg 476
>gb|CW276733.1|CW276733 104_750_11405650_148_35401_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405650, DNA
sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 461 gtactgctgctgctcctcgtggctgggctgg 491
||||||||||||| |||||||||| ||||||
Sbjct: 383 gtactgctgctgcccctcgtggctcggctgg 353
>gb|BE358912.1|BE358912 DG1_32_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 400 tgtcgcagtagctgagcaggtagatctcggc 430
||||| |||||||||||||| ||||||||||
Sbjct: 315 tgtcggagtagctgagcaggaagatctcggc 285
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
|||| ||||||||||||| |||||||| ||||
Sbjct: 473 cggcagcgagtgcaggcatggctccaccgacg 442
>gb|CL699307.2|CL699307 SP__Ba0045J02.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0045J02 5', DNA sequence
Length = 510
Score = 42.1 bits (21), Expect = 0.053
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 gacgtcctcgcagtgccggacgtac 191
|||||||||||||||||||| ||||
Sbjct: 315 gacgtcctcgcagtgccggatgtac 291
>gb|BZ346714.1|BZ346714 hv83d08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hv83d08 5', DNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 473 ctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||||
Sbjct: 506 ctcctcgtggctcggctggaacac 483
>gb|CW020885.1|CW020885 104_109_10409223_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409223, DNA
sequence
Length = 716
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 473 ctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||||
Sbjct: 386 ctcctcgtggctcggctggaacac 363
>gb|CW347279.1|CW347279 fsbb001f007c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f007c05, DNA
sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 473 ctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||||
Sbjct: 156 ctcctcgtggctcggctggaacac 133
>gb|CW473951.1|CW473951 fsbb001f229j01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f229j01, DNA
sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.21
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 242 cggcggcgagtgcaggcacggctccacggacg 273
|||| ||||||||||||| |||||||| ||||
Sbjct: 52 cggcagcgagtgcaggcatggctccaccgacg 21
>gb|BE361458.1|BE361458 DG1_72_E01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 473 ctcctcgtggctgggctggaacac 496
|||||||||||| |||||||||||
Sbjct: 91 ctcctcgtggctcggctggaacac 68
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,485
Number of Sequences: 832831
Number of extensions: 167485
Number of successful extensions: 42528
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42481
Number of HSP's gapped (non-prelim): 45
length of query: 555
length of database: 491,359,669
effective HSP length: 19
effective length of query: 536
effective length of database: 475,535,880
effective search space: 254887231680
effective search space used: 254887231680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)