BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012873.2.2
(1520 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1... 916 0.0
gb|CX607102.1|CX607102 ANR1_6_E09.g1_A002 Anaerobic roots S... 870 0.0
gb|CN138545.1|CN138545 OX1_64_A03.g1_A002 Oxidatively-stres... 733 0.0
gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stres... 716 0.0
gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1... 710 0.0
gb|CN129279.1|CN129279 RHOH1_34_B10.g1_A002 Acid- and alkal... 700 0.0
gb|CN137521.1|CN137521 OX1_57_G07.g1_A002 Oxidatively-stres... 684 0.0
gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkal... 682 0.0
gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1... 674 0.0
gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1... 624 e-177
gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots S... 587 e-165
gb|CN137640.1|CN137640 OX1_58_D03.g1_A002 Oxidatively-stres... 555 e-156
gb|CX610621.1|CX610621 ANR1_19_G06.g1_A002 Anaerobic roots ... 541 e-152
gb|CD231600.1|CD231600 SS1_22_F09.g1_A012 Salt-stressed see... 531 e-149
gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2)... 521 e-146
gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1... 507 e-142
gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (... 472 e-131
gb|CX608316.1|CX608316 ANR1_37_H09.g1_A002 Anaerobic roots ... 466 e-129
gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots ... 462 e-128
gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced ... 424 e-116
gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/ce... 422 e-116
gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stres... 422 e-116
gb|CB927150.1|CB927150 ABA1_13_F08.g1_A012 Abscisic acid-tr... 392 e-107
gb|CD228754.1|CD228754 CCC1_9_E11.g1_A007 Callus culture/ce... 369 e-100
gb|BE362094.1|BE362094 DG1_84_C11.b1_A002 Dark Grown 1 (DG1... 365 8e-099
gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stres... 359 5e-097
gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots ... 347 2e-093
gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-tr... 329 4e-088
gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkal... 329 4e-088
gb|BE599908.1|BE599908 PI1_77_C02.b1_A002 Pathogen induced ... 305 6e-081
gb|CX608598.1|CX608598 ANR1_39_C06.g1_A002 Anaerobic roots ... 283 2e-074
gb|BI141372.1|BI141372 IP1_55_B03.g1_A002 Immature pannicle... 268 1e-069
gb|BE362098.1|BE362098 DG1_84_D11.b1_A002 Dark Grown 1 (DG1... 266 5e-069
gb|CW393089.1|CW393089 fsbb001f079p24f0 Sorghum methylation... 260 3e-067
gb|CW486807.1|CW486807 fsbb001f252e20f0 Sorghum methylation... 252 8e-065
gb|AW678763.1|AW678763 WS1_1_A12.b2_A002 Water-stressed 1 (... 250 3e-064
gb|AW678617.1|AW678617 WS1_1_A12.b1_A002 Water-stressed 1 (... 212 7e-053
gb|BE360812.1|BE360812 DG1_67_G03.b2_A002 Dark Grown 1 (DG1... 204 2e-050
gb|CW196299.1|CW196299 104_620_11181097_148_36814_011 Sorgh... 200 3e-049
gb|CW346173.1|CW346173 104_849_11488883_116_36217_040 Sorgh... 200 3e-049
gb|CW346174.1|CW346174 104_849_11488883_148_36218_040 Sorgh... 200 3e-049
gb|CW480229.1|CW480229 fsbb001f239d02f0 Sorghum methylation... 200 3e-049
gb|CW480230.1|CW480230 fsbb001f239d02k0 Sorghum methylation... 200 3e-049
gb|AW283667.1|AW283667 LG1_222_A08.g1_A002 Light Grown 1 (L... 178 1e-042
gb|CW134363.1|CW134363 104_518_11117266_148_34819_039 Sorgh... 174 2e-041
gb|CW183096.1|CW183096 104_598_11164429_148_36664_049 Sorgh... 174 2e-041
gb|CW427351.1|CW427351 fsbb001f139e20f0 Sorghum methylation... 174 2e-041
gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated ... 168 1e-039
gb|CW119145.1|CW119145 104_496_11108601_116_34636_047 Sorgh... 167 4e-039
gb|CW486808.1|CW486808 fsbb001f252e20k0 Sorghum methylation... 167 4e-039
gb|CW455196.1|CW455196 fsbb001f199p13k0 Sorghum methylation... 137 3e-030
gb|BI141255.1|BI141255 IP1_53_C04.g1_A002 Immature pannicle... 98 3e-018
gb|CD430959.1|CD430959 ETH1_6_A10.b1_A002 Ethylene-treated ... 92 2e-016
gb|CX612381.1|CX612381 GABR1_2_D06.b1_A002 GA- or brassinol... 92 2e-016
gb|BE361587.1|BE361587 DG1_72_A03.g1_A002 Dark Grown 1 (DG1... 86 1e-014
gb|CD430950.1|CD430950 ETH1_6_A08.b1_A002 Ethylene-treated ... 76 1e-011
gb|CW181342.1|CW181342 104_596_11163456_116_36654_092 Sorgh... 74 4e-011
gb|CW185694.1|CW185694 104_603_11166185_148_36702_073 Sorgh... 74 4e-011
gb|BI141254.1|BI141254 IP1_53_C03.g1_A002 Immature pannicle... 74 4e-011
gb|BI141373.1|BI141373 IP1_55_B04.g1_A002 Immature pannicle... 74 4e-011
gb|CL161049.1|CL161049 104_352_10805442_114_31826_114 Sorgh... 66 1e-008
gb|CL161050.1|CL161050 104_352_10805442_116_31827_114 Sorgh... 66 1e-008
gb|CW065681.1|CW065681 104_312_10523281_114_30128 Sorghum m... 66 1e-008
gb|CW065682.1|CW065682 104_312_10523281_115_30130 Sorghum m... 66 1e-008
gb|CW139361.1|CW139361 104_529_11135198_116_34905_055 Sorgh... 66 1e-008
gb|CW168295.1|CW168295 104_577_11154068_116_36494_066 Sorgh... 66 1e-008
gb|CW192938.1|CW192938 104_615_11179297_116_36769_005 Sorgh... 66 1e-008
gb|CW299315.1|CW299315 104_782_11463048_116_36235_092 Sorgh... 66 1e-008
gb|CW403430.1|CW403430 fsbb001f095c10k0 Sorghum methylation... 66 1e-008
gb|CW494628.1|CW494628 fsbb001f286a06f0 Sorghum methylation... 66 1e-008
gb|BE359158.1|BE359158 DG1_39_C02.b1_A002 Dark Grown 1 (DG1... 66 1e-008
gb|BE363053.1|BE363053 DG1_9_D02.b1_A002 Dark Grown 1 (DG1)... 66 1e-008
gb|CB925013.1|CB925013 ABA1_29_B06.g1_A012 Abscisic acid-tr... 66 1e-008
gb|CD206390.1|CD206390 HS1_22_H01.g1_A012 Heat-shocked seed... 66 1e-008
gb|CD206423.1|CD206423 HS1_22_G03.g1_A012 Heat-shocked seed... 66 1e-008
gb|CD213428.1|CD213428 HS1_40_A07.g1_A012 Heat-shocked seed... 66 1e-008
gb|CF428507.1|CF428507 PH1_15_D07.g1_A002 Phosphorous-defic... 66 1e-008
gb|CW202632.1|CW202632 104_628_11185195_116_37086_066 Sorgh... 64 4e-008
gb|CW413255.1|CW413255 fsbb001f112e23f0 Sorghum methylation... 64 4e-008
gb|CW466289.1|CW466289 fsbb001f217h13f0 Sorghum methylation... 58 3e-006
gb|AW922257.1|AW922257 DG1_17_G01.b1_A002 Dark Grown 1 (DG1... 58 3e-006
gb|BZ342273.1|BZ342273 ic81e11.b1 WGS-SbicolorF (JM107 adap... 56 1e-005
gb|BZ349735.1|BZ349735 hr45b01.g1 WGS-SbicolorF (JM107 adap... 56 1e-005
gb|CW065144.1|CW065144 104_311_10522975_114_30118 Sorghum m... 56 1e-005
gb|CW168296.1|CW168296 104_577_11154068_148_36493_066 Sorgh... 56 1e-005
gb|CW183575.1|CW183575 104_599_11164688_148_36677_024 Sorgh... 56 1e-005
gb|CW261808.1|CW261808 104_729_11229713_148_35203_077 Sorgh... 56 1e-005
gb|CW269378.1|CW269378 104_740_11401813_116_36229_055 Sorgh... 56 1e-005
gb|CW305139.1|CW305139 104_790_11466160_116_37435_058 Sorgh... 56 1e-005
gb|CW317851.1|CW317851 104_809_11473636_148_35864_002 Sorgh... 56 1e-005
gb|CW377685.1|CW377685 fsbb001f056b22k0 Sorghum methylation... 56 1e-005
gb|CW408710.1|CW408710 fsbb001f102l13f0 Sorghum methylation... 56 1e-005
gb|BE363139.1|BE363139 DG1_9_D02.g1_A002 Dark Grown 1 (DG1)... 56 1e-005
gb|CF070740.1|CF070740 FE1_4_B05.b1_A002 Iron-deficient see... 56 1e-005
gb|CW142692.1|CW142692 104_534_11137002_116_34951_077 Sorgh... 54 4e-005
gb|CW142693.1|CW142693 104_534_11137002_148_34947_077 Sorgh... 54 4e-005
gb|CW183861.1|CW183861 104_599_11164841_116_36675_065 Sorgh... 54 4e-005
gb|CW188144.1|CW188144 104_607_11172866_116_36724_001 Sorgh... 54 4e-005
gb|CW204386.1|CW204386 104_632_11186514_148_36919_073 Sorgh... 54 4e-005
gb|CW255741.1|CW255741 104_720_11226402_116_35131_071 Sorgh... 54 4e-005
gb|CW287590.1|CW287590 104_765_11411495_116_35521_084 Sorgh... 54 4e-005
gb|CW287591.1|CW287591 104_765_11411495_148_35525_084 Sorgh... 54 4e-005
gb|CW366040.1|CW366040 fsbb001f038n13k0 Sorghum methylation... 54 4e-005
gb|CW456886.1|CW456886 fsbb001f202h04k0 Sorghum methylation... 54 4e-005
gb|BE125424.1|BE125424 DG1_25_G01.b1_A002 Dark Grown 1 (DG1... 54 4e-005
gb|CF429087.1|CF429087 PH1_19_G12.g1_A002 Phosphorous-defic... 54 4e-005
gb|CF432928.1|CF432928 NIT1_19_B11.g1_A002 Nitrogen-deficie... 54 4e-005
gb|CL183456.1|CL183456 104_396_10898188_114_31923_028 Sorgh... 52 2e-004
gb|CW139362.1|CW139362 104_529_11135198_148_34909_055 Sorgh... 52 2e-004
gb|BG048617.1|BG048617 OV1_14_H08.b1_A002 Ovary 1 (OV1) Sor... 52 2e-004
gb|BZ347040.1|BZ347040 hw04e11.b1 WGS-SbicolorF (JM107 adap... 50 6e-004
gb|BZ367897.1|BZ367897 id07b12.g1 WGS-SbicolorF (JM107 adap... 50 6e-004
gb|CW051454.1|CW051454 104_291_10515256_115_30196 Sorghum m... 50 6e-004
gb|CW152652.1|CW152652 104_554_11144606_148_37482_063 Sorgh... 50 6e-004
gb|CW247120.1|CW247120 104_708_11221624_148_36079_064 Sorgh... 50 6e-004
gb|CW247929.1|CW247929 104_709_11222023_116_35029_030 Sorgh... 50 6e-004
gb|CW403429.1|CW403429 fsbb001f095c10f0 Sorghum methylation... 50 6e-004
gb|BZ351615.1|BZ351615 hw04e11.g1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CW148380.1|CW148380 104_547_11141925_116_35012_095 Sorgh... 48 0.002
gb|CW148381.1|CW148381 104_547_11141925_148_35008_095 Sorgh... 48 0.002
gb|CW206175.1|CW206175 104_634_11187455_116_36955_084 Sorgh... 48 0.002
gb|CW206176.1|CW206176 104_634_11187455_148_36956_084 Sorgh... 48 0.002
gb|CW317762.1|CW317762 104_809_11473586_148_35864_003 Sorgh... 48 0.002
gb|CW331425.1|CW331425 104_828_11480895_148_36020_052 Sorgh... 48 0.002
gb|CW491513.1|CW491513 fsbb001f281g15f0 Sorghum methylation... 48 0.002
gb|CW494629.1|CW494629 fsbb001f286a06k0 Sorghum methylation... 48 0.002
gb|CD210805.1|CD210805 HS1_49_C07.g1_A012 Heat-shocked seed... 48 0.002
gb|BZ366510.1|BZ366510 ic97e06.b1 WGS-SbicolorF (JM107 adap... 46 0.010
gb|CW101233.1|CW101233 104_469_11004532_116_34405_016 Sorgh... 46 0.010
gb|CW183095.1|CW183095 104_598_11164429_116_36663_049 Sorgh... 46 0.010
gb|CW185512.1|CW185512 104_603_11166099_148_36698_012 Sorgh... 46 0.010
gb|CW208769.1|CW208769 104_638_11188864_116_36980_056 Sorgh... 46 0.010
gb|CW317382.1|CW317382 104_809_11473385_148_35865_077 Sorgh... 46 0.010
gb|AW286833.2|AW286833 LG1_222_A08.b1_A002 Light Grown 1 (L... 46 0.010
gb|AW923197.1|AW923197 DG1_50_E07.b1_A002 Dark Grown 1 (DG1... 46 0.010
gb|BE357273.1|BE357273 DG1_148_D02.b1_A002 Dark Grown 1 (DG... 46 0.010
gb|CF428989.1|CF428989 PH1_19_G12.b1_A002 Phosphorous-defic... 46 0.010
gb|CN124236.1|CN124236 RHOH1_3_B09.g1_A002 Acid- and alkali... 46 0.010
gb|CN128033.1|CN128033 RHOH1_26_C10.g1_A002 Acid- and alkal... 46 0.010
gb|CW028788.1|CW028788 104_256_10499304_114_30399 Sorghum m... 44 0.038
gb|CW120524.1|CW120524 104_498_11109384_116_34650_096 Sorgh... 44 0.038
gb|CW410405.1|CW410405 fsbb001f105c06k0 Sorghum methylation... 44 0.038
gb|CW456492.1|CW456492 fsbb001f201n16k0 Sorghum methylation... 44 0.038
gb|BI245710.1|BI245710 IP1_63_C04.b1_A002 Immature pannicle... 44 0.038
gb|CL183457.1|CL183457 104_396_10898188_116_31924_028 Sorgh... 42 0.15
gb|CW031414.1|CW031414 104_260_10500796_114_30365 Sorghum m... 42 0.15
gb|CW065145.1|CW065145 104_311_10522975_115_30121 Sorghum m... 42 0.15
gb|CW183574.1|CW183574 104_599_11164688_116_36678_024 Sorgh... 42 0.15
gb|CW269379.1|CW269379 104_740_11401813_148_36230_055 Sorgh... 42 0.15
gb|CW305140.1|CW305140 104_790_11466160_148_37436_058 Sorgh... 42 0.15
gb|CW309406.1|CW309406 104_798_11469179_116_36239_044 Sorgh... 42 0.15
gb|CW317850.1|CW317850 104_809_11473636_116_35860_002 Sorgh... 42 0.15
gb|CW390378.1|CW390378 fsbb001f076a05f0 Sorghum methylation... 42 0.15
gb|CW408711.1|CW408711 fsbb001f102l13k0 Sorghum methylation... 42 0.15
gb|CW442746.1|CW442746 fsbb001f162i18k0 Sorghum methylation... 42 0.15
gb|CW456088.1|CW456088 fsbb001f201e14f0 Sorghum methylation... 42 0.15
gb|CW482651.1|CW482651 fsbb001f242n16k0 Sorghum methylation... 42 0.15
gb|BG240109.1|BG240109 OV1_18_A05.b1_A002 Ovary 1 (OV1) Sor... 42 0.15
gb|CF756225.1|CF756225 DSAF1_4_G03.b1_A011 Drought-stressed... 42 0.15
gb|CF756413.1|CF756413 DSAF1_5_H08.b1_A011 Drought-stressed... 42 0.15
>gb|BE360688.1|BE360688 DG1_66_C04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 555
Score = 916 bits (462), Expect = 0.0
Identities = 525/546 (96%)
Strand = Plus / Plus
Query: 365 gggatacactgtgaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctcaa 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gggatacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctcaa 68
Query: 425 ggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatctgctggactacga 484
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 69 ggcgctggacggcgcggccgagcggctgatcctctgcaaggccgacctcctggactacga 128
Query: 485 cgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccgcctcccccgtcac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 cgccatctgccgcgccgtgcagggctgccagggcgtcttccacaccgcctcccccgtcac 188
Query: 545 cgacgacccggagcaaatggtggagccggcggtgcgcggcaccgagtacgtgatcaacgc 604
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 189 cgacgatccggagcaaatggtggagccggcggtgcgcggcacggagtacgtgatcaacgc 248
Query: 605 ggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtccatcggcgccgtgac 664
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 249 ggcggcggaggccggcacggtgcggcgggtggtgttcacgtcctccatcggcgcggtgac 308
Query: 665 catggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgctggagcgacctcga 724
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 catggaccccagccgcgggcccgacgtcgtggtcgacgagtcgtgctggagcgacctcga 368
Query: 725 gttctgcgagaaaaccaggaactggtactgctacggcaaggcggtggcggagcacgcggc 784
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 gttctgcaagaaaaccaggaactggtactgctacggcaaggcggtggcggagcaggcggc 428
Query: 785 gtgggagacggcccggcggcggggcgtggacctggtggtggtgaaccccgtgctggtggt 844
|||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 429 gtgggacgcggcccggcagcgcggcgtggacctggtggtggtgaacccggtgctggtggt 488
Query: 845 gggccccctgctgcaggcgacggtgaacgccagcatcgcgcacatcctcaagtacctgga 904
|||||| ||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 489 gggcccgctgctgcagccgacggtgaacgccagcatcgcgcacgtgctcaagtacctgga 548
Query: 905 cggctc 910
||||||
Sbjct: 549 cggctc 554
>gb|CX607102.1|CX607102 ANR1_6_E09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_E09_A002 5', mRNA sequence
Length = 742
Score = 870 bits (439), Expect = 0.0
Identities = 526/555 (94%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct: 188 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtg 247
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 248 aagatgctgctcgagaagggatacactgtcaagggcaccgtctggaacccagatgacccg 307
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 308 aagaacgcgcacctcaaggggctggacggcgcggccgagcggctgatcctctgcaaggcc 367
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 368 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccgc 427
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 428 accggctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 487
Query: 588 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcc 547
Query: 648 tccatcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcg 707
|| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 548 tctatcggagcggtgaccatggaccccagccgcgggcccgacgtcgtggtcgacgagtcg 607
Query: 708 tgctggagcgacctcgagttctgcgagaaaaccaggaactggtactgctacggcaaggcg 767
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 608 tgctggagcgacctctagttctgcaagaaaaccaggaactggtactgctacggcaaggcg 667
Query: 768 gtggcggagcacgcggcgtgggagacggcccggcggcggggcgtggacctggtggtggtg 827
||||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 668 gtggcggagcaggcggcgtgggacgcggcccggcatcgcggcgtggacctggtggtggtg 727
Query: 828 aaccccgtgctggtg 842
||||| |||||||||
Sbjct: 728 aacccggtgctggtg 742
>gb|CN138545.1|CN138545 OX1_64_A03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_A03_A002 5', mRNA sequence
Length = 784
Score = 733 bits (370), Expect = 0.0
Identities = 418/434 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 351 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 410
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 411 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 470
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 471 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 530
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 590
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 591 accgcctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 650
Query: 588 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcc 710
Query: 648 tccatcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcg 707
|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 711 tccaccggcgcggtgaccatggaccccagccgcgggcccgacgtcgtggtcgacgagtcg 770
Query: 708 tgctggagcgacct 721
||||||||||||||
Sbjct: 771 tgctggagcgacct 784
>gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_A03_A002 3', mRNA sequence
Length = 747
Score = 716 bits (361), Expect = 0.0
Identities = 568/634 (89%), Gaps = 21/634 (3%)
Strand = Plus / Plus
Query: 780 gcggcgtgggagacggcccggcggcggggcgtggacctggtggtggtgaaccccgtgctg 839
||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct: 3 gcggcgtgggacgcggcccggcagcgcggcgtggacctggtggtggtgaacccggtgctg 62
Query: 840 gtggtgggccccctgctgcaggcgacggtgaacgccagcatcgcgcacatcctcaagtac 899
||||||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||
Sbjct: 63 gtggtgggcccgctgcagcagccgacggtgaacgccagcatcgcgcacgtgctcaagtac 122
Query: 900 ctggacggctcggcccgcaccttcgccaacgccgtgcaggcgtacgtggacgtgcgcgac 959
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 123 ctggacggctccgcgcgcaccttcgccaacgccgtgcaggcgtacgtggacgtccgcgac 182
Query: 960 gtggccgacgcgcacctccgcgtcttcgagagcccccgcgcgtccggccgccacctctgc 1019
|| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 183 gtcgccgacgcgcacctccgcgtcttcgagagccccgccgcgtccggccgatacctctgc 242
Query: 1020 gccgagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgag 1079
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 gccgagcgcgtcctccaccgcgaggacgtcgtccgcaccctcgccaagctcttccccgag 302
Query: 1080 taccccgtcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttc 1139
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 taccccgtccccaccaggtgctccgacgaggtgaacccgcggaagcagccgtacaagttc 362
Query: 1140 tccaaccagaagctccgggacctggggctgcagttccggccggtcagccagtcgctttac 1199
|| ||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 363 tcgaaccagaagctccgggacctgggattggagttccggccggtgagccagtcgctctac 422
Query: 1200 gacacggtgaagaacctccaggagaagggacacctgccggtgctcggagagcggacgacg 1259
|| |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 423 gatacggtgaagaaccttcaggagaagggccacctgccggtgctcggagagcagacga-- 480
Query: 1260 acggaggccgccgacaaggatgc---ccccacggccgagatgcagcagggagggatcgcc 1316
||||||||| | | |||| || | || | |||||| ||||||||||||| ||||||
Sbjct: 481 -cggaggccgacaaggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgcc 539
Query: 1317 atccgtgcctg----agagggcgatgcc----acacatgaacac---aaagcaatg---- 1361
|||||||| || |||||| |||||| |||||||||||| |||||||||
Sbjct: 540 atccgtgcgtgagctagagggagatgccacgtacacatgaacacaaaaaagcaatgttca 599
Query: 1362 ttcatactgctgccctgcacctgctgtgtaaaca 1395
|||||||||||||||||| |||||||||||||||
Sbjct: 600 ttcatactgctgccctgcccctgctgtgtaaaca 633
Score = 61.9 bits (31), Expect = 2e-007
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag 1469
||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 668 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatag 714
>gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 710 bits (358), Expect = 0.0
Identities = 547/607 (90%), Gaps = 21/607 (3%)
Strand = Plus / Plus
Query: 807 ggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacg 866
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct: 4 ggcgtggacctggtggtggtgaacccggtgctggtggtgggcccgctgctgcagccgacg 63
Query: 867 gtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcaccttcgcc 926
||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||
Sbjct: 64 gtgaacgccagcatcgcgcacgtgctcaagtacctggacggctccgcgcgcaccttcgcc 123
Query: 927 aacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttc 986
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 124 aacgccgtgcaggcgtacgtggacgtccgcgacgtcgccgacgcgcacctccgcgtcttc 183
Query: 987 gagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcgaggac 1046
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 184 gagagccccgccgcgtccggccgatacctctgcgccgagcgcgtcctccaccgcgaggac 243
Query: 1047 gtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgac 1106
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 244 gtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctccgac 303
Query: 1107 gaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctgggg 1166
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 304 gaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctggga 363
Query: 1167 ctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggagaag 1226
|| ||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 364 ttggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggagaag 423
Query: 1227 ggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc---c 1283
|| |||||||||||||||||||||| ||||||| ||||||| | | |||| || |
Sbjct: 424 ggccacctgccggtgctcggagagcagacgacg---gaggccgacaaggaggaggccaac 480
Query: 1284 cccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcgatgc 1339
|| | |||||| ||||||||||||| |||||||||||||| || |||||| |||||
Sbjct: 481 gccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggagatgc 540
Query: 1340 c----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgctgt 1388
| |||||||||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct: 541 cacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgctgt 600
Query: 1389 gtaaaca 1395
|||||||
Sbjct: 601 gtaaaca 607
Score = 54.0 bits (27), Expect = 4e-005
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag 1469
||||||||||| ||||||| ||| ||||||||| |||||||||||||
Sbjct: 642 tgtaccctaaggcttgtaaacgtaatgttcgtttttgtgaactatag 688
>gb|CN129279.1|CN129279 RHOH1_34_B10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_B10_A002 5', mRNA sequence
Length = 792
Score = 700 bits (353), Expect = 0.0
Identities = 398/413 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 380 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 439
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 499
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 559
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 619
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 accgcctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 679
Query: 588 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcc 739
Query: 648 tccatcggcgccgtgaccatggaccccaagcgcgggcccgacgtcgtggtcga 700
||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 tccatcggcgcggtgaccatggaccccagccgcgggcccgacgtcgtggtcga 792
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 19 agaatcctaccaaaccccagctaccaactcgatcg 53
>gb|CN137521.1|CN137521 OX1_57_G07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_G07_A002 5', mRNA sequence
Length = 775
Score = 684 bits (345), Expect = 0.0
Identities = 390/405 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 371 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 430
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 431 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 490
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 491 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 550
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 610
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 611 accgcctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 670
Query: 588 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcg 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gagtacgtgatcaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcc 730
Query: 648 tccatcggcgccgtgaccatggaccccaagcgcgggcccgacgtc 692
||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 731 tccatcggcgcggtgaccatggaccccagccgcgggcccgacgtc 775
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 13 agaatcctaccaaaccccagctaccaactcgatcg 47
>gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_34_B10_A002 3', mRNA sequence
Length = 795
Score = 682 bits (344), Expect = 0.0
Identities = 533/593 (89%), Gaps = 21/593 (3%)
Strand = Plus / Plus
Query: 821 ggtggtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtgaacgccagcat 880
|||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1 ggtggtgaacccggtgctggtggtgggcccgctgctgcagccgacggtgaacgccagcat 60
Query: 881 cgcgcacatcctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgcaggc 940
||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 61 cgcgcacgtgctcaagtacctggacggctccgcgcgcaccttcgccaacgccgtgcaggc 120
Query: 941 gtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccgcgc 1000
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 121 gtacgtggacgtccgcgacgtcgccgacgcgcacctccgcgtcttcgagagccccgccgc 180
Query: 1001 gtccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcct 1060
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtccggccgatacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcct 240
Query: 1061 cgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcg 1120
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 241 cgccaagctcttccccgagtaccccgtccccaccaggtgctccgacgaggtgaacccgcg 300
Query: 1121 gaagcagccgtacaagttctccaaccagaagctccgggacctggggctgcagttccggcc 1180
||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 301 gaagcagccgtacaagttctcgaaccagaagctccgggacctgggattggagttccggcc 360
Query: 1181 ggtcagccagtcgctttacgacacggtgaagaacctccaggagaagggacacctgccggt 1240
||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 361 ggtgagccagtcgctctacgatacggtgaagaaccttcaggagaagggccacctgccggt 420
Query: 1241 gctcggagagcggacgacgacggaggccgccgacaaggatgc---ccccacggccgagat 1297
||||||||||| |||| |||||||||| | | |||| || | || | |||||| |
Sbjct: 421 gctcggagagcagacg---acggaggccgacaaggaggaggccaacgccgccgccgaggt 477
Query: 1298 gcagcagggagggatcgccatccgtgcctg----agagggcgatgcc----acacatgaa 1349
|||||||||||| |||||||||||||| || |||||| |||||| |||||||||
Sbjct: 478 gcagcagggaggaatcgccatccgtgcgtgagctagagggagatgccacgtacacatgaa 537
Query: 1350 cac---aaagcaatg----ttcatactgctgccctgcacctgctgtgtaaaca 1395
||| ||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 538 cacaaaaaagcaatgttcattcatactgctgccctgcccctgctgtgtaaaca 590
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 625 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 684
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 685 aaaatggttaatgtt 699
>gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 674 bits (340), Expect = 0.0
Identities = 529/589 (89%), Gaps = 21/589 (3%)
Strand = Plus / Plus
Query: 825 gtgaaccccgtgctggtggtgggccccctgctgcaggcgacggtgaacgccagcatcgcg 884
|||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1 gtgaacccggtgctggtggtgggcccgctgctgcagccgacggtgaacgccagcatcgcg 60
Query: 885 cacatcctcaagtacctggacggctcggcccgcaccttcgccaacgccgtgcaggcgtac 944
||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 61 cacgtgctcaagtacctggacggctccgcgcgcaccttcgccaacgccgtgcaggcgtac 120
Query: 945 gtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccgcgcgtcc 1004
|||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 gtggacgtccgcgacgtcgccgacgcgcacctccgcgtcttcgagagccccgccgcgtcc 180
Query: 1005 ggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgcc 1064
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggccgatacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgcc 240
Query: 1065 aagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcggaag 1124
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 241 aagctcttccccgagtaccccgtccccaccaggtgctccgacgaggtgaacccgcggaag 300
Query: 1125 cagccgtacaagttctccaaccagaagctccgggacctggggctgcagttccggccggtc 1184
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct: 301 cagccgtacaagttctcgaaccagaagctccgggacctgggattggagttccggccggtg 360
Query: 1185 agccagtcgctttacgacacggtgaagaacctccaggagaagggacacctgccggtgctc 1244
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 361 agccagtcgctctacgatacggtgaagaaccttcaggagaagggccacctgccggtgctc 420
Query: 1245 ggagagcggacgacgacggaggccgccgacaaggatgc---ccccacggccgagatgcag 1301
||||||| |||| |||||||||| | | |||| || | || | |||||| |||||
Sbjct: 421 ggagagcagacg---acggaggccgacaaggaggaggccaacgccgccgccgaggtgcag 477
Query: 1302 cagggagggatcgccatccgtgcctg----agagggcgatgcc----acacatgaacac- 1352
|||||||| |||||||||||||| || |||||| |||||| ||||||||||||
Sbjct: 478 cagggaggaatcgccatccgtgcgtgagctagagggagatgccacgtacacatgaacaca 537
Query: 1353 --aaagcaatg----ttcatactgctgccctgcacctgctgtgtaaaca 1395
||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 538 aaaaagcaatgttcattcatactgctgccctgcccctgctgtgtaaaca 586
Score = 54.0 bits (27), Expect = 4e-005
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag 1469
||||||||||| ||||||| ||| ||||||||| |||||||||||||
Sbjct: 621 tgtaccctaaggcttgtaaacgtaatgttcgtttttgtgaactatag 667
>gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 642
Score = 624 bits (315), Expect = e-177
Identities = 495/552 (89%), Gaps = 21/552 (3%)
Strand = Plus / Plus
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||
Sbjct: 5 cgacggtgaacgccagcatcgcgcacgtgctcaagtacctggacggctccgcgcgcacct 64
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 65 tcgccaacgccgtgcaggcgtacgtggacgtccgcgacgtcgccgacgcgcacctccgcg 124
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcg 1041
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 125 tcttcgagagccccgccgcgtccggccgatacctctgcgccgagcgcgtcctccaccgcg 184
Query: 1042 aggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgct 1101
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 185 aggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgct 244
Query: 1102 ccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacc 1161
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 245 ccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacc 304
Query: 1162 tggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccagg 1221
|||| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct: 305 tgggattggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcagg 364
Query: 1222 agaagggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatg 1281
||||||| |||||||||||||||||||||| ||||| ||||||||| | | |||| |
Sbjct: 365 agaagggccacctgccggtgctcggagagcagacga---cggaggccgacaaggaggagg 421
Query: 1282 c---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggc 1334
| | || | |||||| ||||||||||||| |||||||||||||| || ||||||
Sbjct: 422 ccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagaggga 481
Query: 1335 gatgcc----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacct 1383
|||||| |||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct: 482 gatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccct 541
Query: 1384 gctgtgtaaaca 1395
||||||||||||
Sbjct: 542 gctgtgtaaaca 553
Score = 61.9 bits (31), Expect = 2e-007
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag 1469
||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 588 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatag 634
>gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_E09_A002 3', mRNA sequence
Length = 667
Score = 587 bits (296), Expect = e-165
Identities = 494/557 (88%), Gaps = 21/557 (3%)
Strand = Plus / Plus
Query: 857 gcaggcgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccg 916
|||| |||||||||||||||||||||||||| | ||||||||||||||||| || || ||
Sbjct: 1 gcagccgacggtgaacgccagcatcgcgcacgtgctcaagtacctggacggttccgcgcg 60
Query: 917 caccttcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacct 976
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct: 61 caccttcgccaacgccgtgcaggcgtacgtggacgtccgcgacgtcgccgacgcgcactt 120
Query: 977 ccgcgtcttcgagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctcca 1036
||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct: 121 ccgcgtcttagagagccccgccgcgtccggccgatacctttgcgccgagcgcgtcctcca 180
Query: 1037 ccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccag 1096
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 ccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccag 240
Query: 1097 gtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccg 1156
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 gtgttccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccg 300
Query: 1157 ggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacct 1216
||||||||| || ||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 301 ggacctgggattggagttccggccggtgagccagtcgctctacgatacggtgaagaacct 360
Query: 1217 ccaggagaagggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaa 1276
||||||||||| |||||||||||||||||||||| |||| |||||||||| | | |
Sbjct: 361 tcaggagaagggccacctgccggtgctcggagagcagacg---acggaggccgacaagga 417
Query: 1277 ggatgc---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg----ag 1329
||| || | || | |||||| ||||||||||||| |||||||||||||| || ||
Sbjct: 418 ggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctag 477
Query: 1330 agggcgatgcc----acacatgaacac---aaagcaatg----ttcatactgctgccctg 1378
|||| |||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct: 478 agggagatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctg 537
Query: 1379 cacctgctgtgtaaaca 1395
| |||||||||||||||
Sbjct: 538 cccctgctgtgtaaaca 554
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 589 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 648
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 649 aaaatggttaatgtt 663
>gb|CN137640.1|CN137640 OX1_58_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_D03_A002 5', mRNA sequence
Length = 697
Score = 555 bits (280), Expect = e-156
Identities = 313/324 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 374 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 433
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 434 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 493
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 553
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 613
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 614 accgcctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 673
Query: 588 gagtacgtgatcaacgcggcggcg 611
||||||||||||||||||||||||
Sbjct: 674 gagtacgtgatcaacgcggcggcg 697
>gb|CX610621.1|CX610621 ANR1_19_G06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_G06_A002 5', mRNA sequence
Length = 694
Score = 541 bits (273), Expect = e-152
Identities = 306/317 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 378 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 437
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 497
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 557
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 617
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 accgcctcccccgtcaccgacgatccggagcaaatggtggagccggcggtgcgcggcacg 677
Query: 588 gagtacgtgatcaacgc 604
|||||||||||||||||
Sbjct: 678 gagtacgtgatcaacgc 694
>gb|CD231600.1|CD231600 SS1_22_F09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F09_A012 5', mRNA sequence
Length = 697
Score = 531 bits (268), Expect = e-149
Identities = 304/316 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 382 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 441
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 442 aagatgctgctcgaaaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 501
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 502 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 561
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 621
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagccggcggtgcgcggcacc 587
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 622 accgcctcccccgtcaccgacgacccggagcaagtggtggagccggcggtgcgcggcacg 681
Query: 588 gagtacgtgatcaacg 603
||||||||||||||||
Sbjct: 682 gagtacgtgatcaacg 697
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 21 agaatcctaccaaaccccagctaccaactcgatcg 55
>gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 555
Score = 521 bits (263), Expect = e-146
Identities = 484/551 (87%), Gaps = 25/551 (4%)
Strand = Plus / Plus
Query: 941 gtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagcccccgcgc 1000
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 1 gtacgtggacgtccgcgacgtcgccgacgcgcacctccgcgtcttcgagagccccgccgc 60
Query: 1001 gtccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcct 1060
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtccggccgatacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtccgcatcct 120
Query: 1061 cgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtgaatccgcg 1120
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 121 cgccaagctcttccccgagtaccccgtccccaccaggtgctccgacgaggtgaacccgcg 180
Query: 1121 gaagcagccgtacaagttctccaaccagaagctccgggacctggggctgcagttccggcc 1180
||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 181 gaagcaggcgtacaagttctcgaaccagaagctccgggacctgggcctggagttccggcc 240
Query: 1181 ggtcagccagtcgctttacgacacggtgaagaacctccaggagaagggacacctgccggt 1240
||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 241 ggtgagccagtcgctctacgatacggtgaagaaccttcaggagaagggccacctgccggt 300
Query: 1241 gctcggagagcggacgacgacggaggccgccgacaaggatgc---ccccacggccgagat 1297
||||||||||| |||| |||||||||| | | |||| || | || | |||||| |
Sbjct: 301 gctcggagagcagacg---acggaggccgacaaggaggaggccaacgccgccgccgaggt 357
Query: 1298 gcagcagggagggatcgccatccgtgcctg----agagggcgatgcc----acacatgaa 1349
|||||||||||| |||||||||||||| || |||||| |||||| |||||||||
Sbjct: 358 gcagcagggaggaatcgccatccgtgcgtgagctagagggagatgccacgtacacatgaa 417
Query: 1350 cac---aaagcaatg----ttcatactgctgccctgcacctgctgtgtaaacaggcctgt 1402
||| ||||||||| |||||||||||||||||| |||||| |||||||| | ||
Sbjct: 418 cacaaaaaagcaatgttcattcatactgctgccctgctcctgctctgtaaacaaactagt 477
Query: 1403 gtttgtt--ctggctgat-agtgatgtaccctaagacttgt-aacgtcatgttcgttctt 1458
||||||| ||||||||| | |||||||||||| ||||| ||||| ||||||||||||
Sbjct: 478 gtttgttcgctggctgatgatatatgtaccctaaggcttgtaaacgtaatgttcgttctt 537
Query: 1459 gtgaactatag 1469
|||||||||||
Sbjct: 538 gtgaactatag 548
>gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 507 bits (256), Expect = e-142
Identities = 427/481 (88%), Gaps = 21/481 (4%)
Strand = Plus / Plus
Query: 933 gtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcgtcttcgagagc 992
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gtgcaggcgtacgtggacgtccgcgacgtcgccgacgcgcacctccgcgtcttcgagagc 60
Query: 993 ccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacgtcgtc 1052
||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccgccgcgtccggccgatacctttgcgccgagcgcgtcctccaccgcgaggacgtcgtc 120
Query: 1053 cgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgaggtg 1112
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 cgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctccgacgaggtg 180
Query: 1113 aatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggggctgcag 1172
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct: 181 aacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctgggattggag 240
Query: 1173 ttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggagaagggacac 1232
||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct: 241 ttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggagaagggccac 300
Query: 1233 ctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc---ccccacg 1289
||||||||||||||||||| |||| |||||||||| | | |||| || | || |
Sbjct: 301 ctgccggtgctcggagagcagacg---acggaggccgacaaggaggaggccaacgccgcc 357
Query: 1290 gccgagatgcagcagggagggatcgccatccgtgcctg----agagggcgatgcc----a 1341
|||||| ||||||||||||| |||||||||||||| || |||||| |||||| |
Sbjct: 358 gccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggagatgccacgta 417
Query: 1342 cacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgctgtgtaaac 1394
||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 418 cacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgctgtgtaaac 477
Query: 1395 a 1395
|
Sbjct: 478 a 478
Score = 48.1 bits (24), Expect = 0.002
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtga 1462
||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 513 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtga 552
>gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 472 bits (238), Expect = e-131
Identities = 400/451 (88%), Gaps = 21/451 (4%)
Strand = Plus / Plus
Query: 963 gccgacgcgcacctccgcgtcttcgagagcccccgcgcgtccggccgccacctctgcgcc 1022
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4 gccgacgcgcacctccgcgtcttcgagagccccgccgcgtccggccgatacctctgcgcc 63
Query: 1023 gagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtac 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gagcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtac 123
Query: 1083 cccgtcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctcc 1142
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 124 cccgtccccaccaggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcg 183
Query: 1143 aaccagaagctccgggacctggggctgcagttccggccggtcagccagtcgctttacgac 1202
||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||
Sbjct: 184 aaccagaagctccgggacctgggattggagttccggccggtgagccagtcgctctacgat 243
Query: 1203 acggtgaagaacctccaggagaagggacacctgccggtgctcggagagcggacgacgacg 1262
|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 244 acggtgaagaaccttcaggagaagggccacctgccggtgctcggagagcagacgacg--- 300
Query: 1263 gaggccgccgacaaggatgc---ccccacggccgagatgcagcagggagggatcgccatc 1319
||||||| | | |||| || | || | |||||| ||||||||||||| |||||||||
Sbjct: 301 gaggccgacaaggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatc 360
Query: 1320 cgtgcctg----agagggcgatgcc----acacatgaacac---aaagcaatg----ttc 1364
||||| || |||||| |||||| |||||||||||| ||||||||| |||
Sbjct: 361 cgtgcgtgagctagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattc 420
Query: 1365 atactgctgccctgcacctgctgtgtaaaca 1395
||||||||||||||| |||||||||||||||
Sbjct: 421 atactgctgccctgcccctgctgtgtaaaca 451
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 486 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 545
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 546 aaaatggttaatgtt 560
>gb|CX608316.1|CX608316 ANR1_37_H09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_H09_A002 5', mRNA sequence
Length = 535
Score = 466 bits (235), Expect = e-129
Identities = 271/283 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 253 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 312
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 313 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 372
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 373 aagaacgcgcacctcatggcgctggacggcgcggccgagcggctgatcctctgcaagacc 432
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttccac 492
Query: 528 accgcctcccccgtcaccgacgacccggagcaaatggtggagc 570
||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 accgcctcccccgtcaccgacgatccggagcaaatggtggagc 535
>gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_H09_A002 3', mRNA sequence
Length = 560
Score = 462 bits (233), Expect = e-128
Identities = 398/450 (88%), Gaps = 21/450 (4%)
Strand = Plus / Plus
Query: 964 ccgacgcgcacctccgcgtcttcgagagcccccgcgcgtccggccgccacctctgcgccg 1023
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 1 ccgacgcgcacctccgcgtcttcgagagccccgccgcgtccggccgatacctatgcgccg 60
Query: 1024 agcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtacc 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcgcgtcctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtacc 120
Query: 1084 ccgtcccagccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctcca 1143
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 121 ccgtccccaccaggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcga 180
Query: 1144 accagaagctccgggacctggggctgcagttccggccggtcagccagtcgctttacgaca 1203
|||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||| |
Sbjct: 181 accagaagctccgggacctgggattggagttccggccggtgagccagtcgctctacgata 240
Query: 1204 cggtgaagaacctccaggagaagggacacctgccggtgctcggagagcggacgacgacgg 1263
||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct: 241 cggtgaagaaccttcaggagaagggccacctgccggtgctcggagagcagacgacg---g 297
Query: 1264 aggccgccgacaaggatgc---ccccacggccgagatgcagcagggagggatcgccatcc 1320
|||||| | | |||| || | || | |||||| ||||||||||||| ||||||||||
Sbjct: 298 aggccgacaaggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatcc 357
Query: 1321 gtgcctg----agagggcgatgcc----acacatgaacac---aaagcaatg----ttca 1365
|||| || |||||| |||||| |||||||||||| ||||||||| ||||
Sbjct: 358 gtgcgtgagctagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattca 417
Query: 1366 tactgctgccctgcacctgctgtgtaaaca 1395
|||||||||||||| |||||||||||||||
Sbjct: 418 tactgctgccctgcccctgctgtgtaaaca 447
Score = 65.9 bits (33), Expect = 1e-008
Identities = 66/75 (88%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||| ||
Sbjct: 482 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgagta 541
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 542 aaaatggttaatgtt 556
>gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 424 bits (214), Expect = e-116
Identities = 378/430 (87%), Gaps = 21/430 (4%)
Strand = Plus / Plus
Query: 984 ttcgagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcgag 1043
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 1 ttcgagagccccgccgcgtccggccgatacctntgcgccgagcgcgtcctccaccgcgag 60
Query: 1044 gacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctcc 1103
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctcc 120
Query: 1104 gacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctg 1163
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 gacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctg 180
Query: 1164 gggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggag 1223
|| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 181 ggattggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggag 240
Query: 1224 aagggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc- 1282
||||| |||||||||||||||||||||| ||||||| ||||||| | | |||| ||
Sbjct: 241 aagggccacctgccggtgctcggagagcagacgacg---gaggccgacaaggaggaggcc 297
Query: 1283 --ccccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcga 1336
| || | |||||| ||||||||||||| |||||||||||||| || |||||| ||
Sbjct: 298 aacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggaga 357
Query: 1337 tgcc----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgc 1385
|||| |||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct: 358 tgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgc 417
Query: 1386 tgtgtaaaca 1395
||||||||||
Sbjct: 418 tgtgtaaaca 427
Score = 54.0 bits (27), Expect = 4e-005
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag 1469
||||||||||| ||||||| ||| ||||||||| |||||||||||||
Sbjct: 462 tgtaccctaaggcttgtaaacgtaatgttcgtttttgtgaactatag 508
>gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_E11_A007 3', mRNA sequence
Length = 535
Score = 422 bits (213), Expect = e-116
Identities = 375/426 (88%), Gaps = 21/426 (4%)
Strand = Plus / Plus
Query: 988 agagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcgaggacg 1047
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagccccgccgcgtccggccgatacctctgcgccgagcgcgtcctccaccgcgaggacg 60
Query: 1048 tcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacg 1107
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 tcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctccgacg 120
Query: 1108 aggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggggc 1167
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 aggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctgggat 180
Query: 1168 tgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggagaagg 1227
|| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 181 tggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggagaagg 240
Query: 1228 gacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc---cc 1284
| |||||||||||||||||||||| ||||||| ||||||| | | |||| || |
Sbjct: 241 gccacctgccggtgctcggagagcagacgacg---gaggccgacaaggaggaggccaacg 297
Query: 1285 ccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcgatgcc 1340
|| | |||||| ||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct: 298 ccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggagatgcc 357
Query: 1341 ----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgctgtg 1389
|||||||||||| ||||||||| |||||||||||||||||| |||||||||
Sbjct: 358 acgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgctgtg 417
Query: 1390 taaaca 1395
||||||
Sbjct: 418 taaaca 423
Score = 65.9 bits (33), Expect = 1e-008
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 458 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 517
Query: 1480 aaattggttaa 1490
||| |||||||
Sbjct: 518 aaaatggttaa 528
>gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_G07_A002 3', mRNA sequence
Length = 532
Score = 422 bits (213), Expect = e-116
Identities = 378/430 (87%), Gaps = 21/430 (4%)
Strand = Plus / Plus
Query: 984 ttcgagagcccccgcgcgtccggccgccacctctgcgccgagcgcgtcctccaccgcgag 1043
|||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 1 ttcgagagccccgccgcgtccggccgatacctgtgcgccgagcgcgtcctccaccgcgag 60
Query: 1044 gacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctcc 1103
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctcc 120
Query: 1104 gacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctg 1163
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 121 gacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctg 180
Query: 1164 gggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggag 1223
|| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 181 ggattggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggag 240
Query: 1224 aagggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc- 1282
||||| |||||||||||||||||||||| ||||||| ||||||| | | |||| ||
Sbjct: 241 aagggccacctgccggtgctcggagagcagacgacg---gaggccgacaaggaggaggcc 297
Query: 1283 --ccccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcga 1336
| || | |||||| ||||||||||||| |||||||||||||| || |||||| ||
Sbjct: 298 aacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggaga 357
Query: 1337 tgcc----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgc 1385
|||| |||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct: 358 tgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgc 417
Query: 1386 tgtgtaaaca 1395
||||||||||
Sbjct: 418 tgtgtaaaca 427
Score = 65.9 bits (33), Expect = 1e-008
Identities = 63/71 (88%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 462 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 521
Query: 1480 aaattggttaa 1490
||| |||||||
Sbjct: 522 aaaatggttaa 532
>gb|CB927150.1|CB927150 ABA1_13_F08.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_13_F08_A012 5', mRNA sequence
Length = 627
Score = 392 bits (198), Expect = e-107
Identities = 228/238 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 390 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 449
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 450 aagatgctgctcgaaaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 509
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 510 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 569
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttcc 525
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gacctcctggactacgacgccatctgccgcgccgtgcagggctgccagggcgtcttcc 627
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 29 agaatcctaccaaaccccagctaccaactcgatcg 63
>gb|CD228754.1|CD228754 CCC1_9_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_E11_A007 5', mRNA sequence
Length = 597
Score = 369 bits (186), Expect = e-100
Identities = 213/222 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 376 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 435
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 436 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 495
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 555
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagggc 509
|| || ||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacctcctggactacgacgccatctgccgcgccgtgcagggc 597
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 15 agaatcctaccaaaccccagctaccaactcgatcg 49
>gb|BE362094.1|BE362094 DG1_84_C11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 597
Score = 365 bits (184), Expect = 8e-099
Identities = 211/220 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 378 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 437
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 497
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 557
Query: 468 gatctgctggactacgacgccatctgccgcgccgtgcagg 507
|| || ||||||||||||||||||||||||||||||||||
Sbjct: 558 gacctcctggactacgacgccatctgccgcgccgtgcagg 597
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 17 agaatcctaccaaaccccagctaccaactcgatcg 51
>gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_D03_A002 3', mRNA sequence
Length = 483
Score = 359 bits (181), Expect = 5e-097
Identities = 334/382 (87%), Gaps = 21/382 (5%)
Strand = Plus / Plus
Query: 1032 ctccaccgcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccca 1091
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 1 ctccaccgcgaggacgtcgtccgcatccttgccaagttcttccccgagtaccccgtcccc 60
Query: 1092 gccaggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaag 1151
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 61 accaggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaag 120
Query: 1152 ctccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtgaag 1211
|||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 121 ctccgggacctgggattggagttccggccggtgagccagtcgctttacgatacggtgaag 180
Query: 1212 aacctccaggagaagggacacctgccggtgctcggagagcggacgacgacggaggccgcc 1271
||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||| |
Sbjct: 181 aaccttcaggagaagggccacctgccggtgctcggagagcagacgacg---gaggccgac 237
Query: 1272 gacaaggatgc---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg- 1327
| |||| || | || | |||||| ||||||||||||| |||||||||||||| ||
Sbjct: 238 aaggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtga 297
Query: 1328 ---agagggcgatgcc----acacatgaacac---aaagcaatg----ttcatactgctg 1373
|||||| |||||| |||||||||||| ||||||||| ||||||||||||
Sbjct: 298 gctagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctg 357
Query: 1374 ccctgcacctgctgtgtaaaca 1395
|||||| |||||||||||||||
Sbjct: 358 ccctgcccctgctgtgtaaaca 379
Score = 63.9 bits (32), Expect = 4e-008
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 414 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 473
Query: 1480 aaattggtta 1489
||| ||||||
Sbjct: 474 aaaatggtta 483
>gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_C06_A002 3', mRNA sequence
Length = 491
Score = 347 bits (175), Expect = 2e-093
Identities = 325/372 (87%), Gaps = 21/372 (5%)
Strand = Plus / Plus
Query: 1042 aggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgct 1101
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 aggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgct 60
Query: 1102 ccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacc 1161
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 61 ccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacc 120
Query: 1162 tggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaacctccagg 1221
|||| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct: 121 tgggattggagttccggccggtgagccagtcgctctacgatacggtgaagaaccttcagg 180
Query: 1222 agaagggacacctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatg 1281
||||||| |||||||||||||||||||||| ||||| ||||||||| | | |||| |
Sbjct: 181 agaagggccacctgccggtgctcggagagcagacga---cggaggccgacaaggaggagg 237
Query: 1282 c---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg----agagggc 1334
| | || | |||||| ||||||||||||| |||||||||||||| || ||||||
Sbjct: 238 ccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagaggga 297
Query: 1335 gatgcc----acacatgaacac---aaagcaatg----ttcatactgctgccctgcacct 1383
|||||| |||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct: 298 gatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccct 357
Query: 1384 gctgtgtaaaca 1395
||||||||||||
Sbjct: 358 gctgtgtaaaca 369
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 404 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 463
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 464 aaaatggttaatgtt 478
>gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_13_F08_A012 3', mRNA sequence
Length = 472
Score = 329 bits (166), Expect = 4e-088
Identities = 316/363 (87%), Gaps = 21/363 (5%)
Strand = Plus / Plus
Query: 1051 tccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgagg 1110
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgctccgacgagg 60
Query: 1111 tgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggggctgc 1170
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 61 tgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctgggattgg 120
Query: 1171 agttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggagaagggac 1230
||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct: 121 agttccggccggtgagccagtcgctctacgatacggtgaagaaccttcaggagaagggcc 180
Query: 1231 acctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc---cccca 1287
||||||||||||||||||||| |||||| |||||||| | | |||| || | ||
Sbjct: 181 acctgccggtgctcggagagcagacgac---ggaggccgacaaggaggaggccaacgccg 237
Query: 1288 cggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcgatgcc--- 1340
| |||||| ||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct: 238 ccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggagatgccacg 297
Query: 1341 -acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgctgtgtaa 1392
|||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 298 tacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgctgtgtaa 357
Query: 1393 aca 1395
|||
Sbjct: 358 aca 360
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/72 (88%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 395 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 454
Query: 1480 aaattggttaat 1491
||| ||||||||
Sbjct: 455 aaaatggttaat 466
>gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_11_G11_A002 3', mRNA sequence
Length = 474
Score = 329 bits (166), Expect = 4e-088
Identities = 316/363 (87%), Gaps = 21/363 (5%)
Strand = Plus / Plus
Query: 1051 tccgcatcctcgccaagctcttccccgagtaccccgtcccagccaggtgctccgacgagg 1110
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 1 tccgcatcctcgccaagctcttccccgagtaccccgtccccaccaggtgttccgacgagg 60
Query: 1111 tgaatccgcggaagcagccgtacaagttctccaaccagaagctccgggacctggggctgc 1170
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 61 tgaacccgcggaagcagccgtacaagttctcgaaccagaagctccgggacctgggattgg 120
Query: 1171 agttccggccggtcagccagtcgctttacgacacggtgaagaacctccaggagaagggac 1230
||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct: 121 agttccggccggtgagccagtcgctttacgatacggtgaagaaccttcaggagaagggcc 180
Query: 1231 acctgccggtgctcggagagcggacgacgacggaggccgccgacaaggatgc---cccca 1287
||||||||||||| ||||||| |||||||||||||| | | |||| || ||||
Sbjct: 181 acctgccggtgctgggagagc---agacgacggaggccgacaaggaggaggccaaccccg 237
Query: 1288 cggccgagatgcagcagggagggatcgccatccgtgcctg----agagggcgatgcc--- 1340
| |||||| ||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct: 238 ccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagctagagggagatgccacg 297
Query: 1341 -acacatgaacac---aaagcaatg----ttcatactgctgccctgcacctgctgtgtaa 1392
|||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 298 tacacatgaacacaaaaaagcaatgttcattcatactgctgccctgcccctgctgtgtaa 357
Query: 1393 aca 1395
|||
Sbjct: 358 aca 360
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 395 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 454
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 455 aaaatggttaatgtt 469
>gb|BE599908.1|BE599908 PI1_77_C02.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 566
Score = 305 bits (154), Expect = 6e-081
Identities = 175/182 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 383 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 442
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 502
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctgatcctctgcaaggcc 562
Query: 468 ga 469
||
Sbjct: 563 ga 564
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 22 agaatcctaccaaaccccagctaccaactcgatcg 56
>gb|CX608598.1|CX608598 ANR1_39_C06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_C06_A002 5', mRNA sequence
Length = 610
Score = 283 bits (143), Expect = 2e-074
Identities = 182/195 (93%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||
Sbjct: 416 gggaacgggcagaccgtgtgcgtcaccggcgcggccggatacatcgcctcgtggctcgtc 475
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 476 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 535
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctgatcctctgcaaggcc 467
|||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 536 aagaacgcgcacctcatggcgctgaacggcgcggccgatcggctgatcctctgcaaggcc 595
Query: 468 gatctgctggactac 482
|| || |||||||||
Sbjct: 596 gacctcctggactac 610
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 55 agaatcctaccaaaccccagctaccaactcgatcg 89
>gb|BI141372.1|BI141372 IP1_55_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 522
Score = 268 bits (135), Expect = 1e-069
Identities = 276/320 (86%), Gaps = 21/320 (6%)
Strand = Plus / Plus
Query: 1094 caggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagct 1153
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 92 caggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagct 151
Query: 1154 ccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaa 1213
|||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 152 ccgggacctgggattggagttccggccggtgagccagtcgctttacgatacggtgaagaa 211
Query: 1214 cctccaggagaagggacacctgccggtgctcggagagcggacgacgacggaggccgccga 1273
||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| | |
Sbjct: 212 ccttcaggagaagggccacctgccggtgctcggagagcagacgac---ggaggccgacaa 268
Query: 1274 caaggatgc---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg--- 1327
|||| || | || | |||||| ||||||||||||| |||||||||||||| ||
Sbjct: 269 ggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagc 328
Query: 1328 -agagggcgatgcc----acacatgaacac---aaagcaatg----ttcatactgctgcc 1375
|||||| |||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 329 tagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgcc 388
Query: 1376 ctgcacctgctgtgtaaaca 1395
|||| |||||||||||||||
Sbjct: 389 ctgcccctgctgtgtaaaca 408
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 443 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 502
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 503 aaaatggttaatgtt 517
>gb|BE362098.1|BE362098 DG1_84_D11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 266 bits (134), Expect = 5e-069
Identities = 158/166 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||
Sbjct: 378 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatagcctcgtggctcgtc 437
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 497
Query: 408 aagaacgcgcacctcaaggcgctggacggcgccgccgagcggctga 453
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 498 aagaacgcgcacctcaaggcgctggacggcgcggccgagcggctga 543
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 17 agaatcctaccaaaccccagctaccaactcgatcg 51
>gb|CW393089.1|CW393089 fsbb001f079p24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079p24, DNA
sequence
Length = 542
Score = 260 bits (131), Expect = 3e-067
Identities = 275/320 (85%), Gaps = 21/320 (6%)
Strand = Plus / Plus
Query: 1094 caggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagct 1153
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 175 caggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagct 234
Query: 1154 ccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaa 1213
|||||||||||| || ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 235 ccgggacctgggattggagttccggccggtgagccagtcgctctacgatacggtgaagaa 294
Query: 1214 cctccaggagaagggacacctgccggtgctcggagagcggacgacgacggaggccgccga 1273
||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||| | |
Sbjct: 295 ccttcaggagaagggccacctgccggtgctcggagagcagacgacg---gaggccgacaa 351
Query: 1274 caaggatgc---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg--- 1327
|||| || | || | |||||| ||||||||||||| |||||||||||||| ||
Sbjct: 352 ggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagc 411
Query: 1328 -agagggcgatgcc----acacatgaacac---aaagcaatg----ttcatactgctgcc 1375
|||||| |||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 412 tagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgcc 471
Query: 1376 ctgcacctgctgtgtaaaca 1395
|||| |||||||||||||||
Sbjct: 472 ctgcccctgctgtgtaaaca 491
>gb|CW486807.1|CW486807 fsbb001f252e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252e20, DNA
sequence
Length = 678
Score = 252 bits (127), Expect = 8e-065
Identities = 274/320 (85%), Gaps = 21/320 (6%)
Strand = Plus / Minus
Query: 1094 caggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagct 1153
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 346 caggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagct 287
Query: 1154 ccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtgaagaa 1213
||||||| |||| || ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 286 ccgggacttgggattggagttccggccggtgagccagtcgctctacgatacggtgaagaa 227
Query: 1214 cctccaggagaagggacacctgccggtgctcggagagcggacgacgacggaggccgccga 1273
||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||| | |
Sbjct: 226 ccttcaggagaagggccacctgccggtgctcggagagcagacgacg---gaggccgacaa 170
Query: 1274 caaggatgc---ccccacggccgagatgcagcagggagggatcgccatccgtgcctg--- 1327
|||| || | || | |||||| ||||||||||||| |||||||||||||| ||
Sbjct: 169 ggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatccgtgcgtgagc 110
Query: 1328 -agagggcgatgcc----acacatgaacac---aaagcaatg----ttcatactgctgcc 1375
|||||| |||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct: 109 tagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattcatactgctgcc 50
Query: 1376 ctgcacctgctgtgtaaaca 1395
|||| |||||||||||||||
Sbjct: 49 ctgcccctgctgtgtaaaca 30
>gb|AW678763.1|AW678763 WS1_1_A12.b2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 527
Score = 250 bits (126), Expect = 3e-064
Identities = 144/150 (96%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 378 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 437
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 497
Query: 408 aagaacgcgcacctcaaggcgctggacggc 437
||||||||||||||||||||||||||||||
Sbjct: 498 aagaacgcgcacctcaaggcgctggacggc 527
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 16 agaatcctaccaaaccccagctaccaactcgatcg 50
>gb|AW678617.1|AW678617 WS1_1_A12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 212 bits (107), Expect = 7e-053
Identities = 132/139 (94%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 377 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 436
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaaccca-gatgaccc 406
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 437 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccaggatgaccc 496
Query: 407 gaagaacgcgcacctcaag 425
|||||||||||||||||||
Sbjct: 497 gaagaacgcgcacctcaag 515
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 16 agaatcctaccaaaccccagctaccaactcgatcg 50
>gb|BE360812.1|BE360812 DG1_67_G03.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 498
Score = 204 bits (103), Expect = 2e-050
Identities = 121/127 (95%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 372 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 431
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccagatgacccg 407
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 432 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccagatgacccg 491
Query: 408 aagaacg 414
|||||||
Sbjct: 492 aagaacg 498
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 10 agaatcctaccaaaccccagctaccaactcgatcg 44
>gb|CW196299.1|CW196299 104_620_11181097_148_36814_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181097, DNA
sequence
Length = 737
Score = 200 bits (101), Expect = 3e-049
Identities = 293/352 (83%), Gaps = 5/352 (1%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcc-cggc 801
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 42 gaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggaggcggcggc 101
Query: 802 ggcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcagg 861
| || || ||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 102 g-cgcggggtggacctggtggtggtgaacccggtgctggtgcaggggccggcgctgcagc 160
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|| |||||||||||||| | |||| | |||||||||||| ||||||| ||| || |
Sbjct: 161 cgtcggtgaacgccagcctgatgcacgtgctcaagtacctgaacggctccgccaagacgt 220
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||
Sbjct: 221 acgccaacgccgtgcaggcgtacgtgcacgtccgcgacgccgccgacgcgcacgtccgcg 280
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccga--gcg-cgtcctccacc 1038
|||||||| || | ||| ||||||| || |||||||||| ||| ||| |||||||
Sbjct: 281 tcttcgaggcgccgcacgccgccggccggtacatctgcgccgacggcgccgtgctccacc 340
Query: 1039 gcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccc 1090
|||||||||||||| | | ||| |||| ||||||| || |||||||||||
Sbjct: 341 gcgaggacgtcgtcaggacgctccgcaagttcttcccggactaccccgtccc 392
>gb|CW346173.1|CW346173 104_849_11488883_116_36217_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488883, DNA
sequence
Length = 741
Score = 200 bits (101), Expect = 3e-049
Identities = 293/352 (83%), Gaps = 5/352 (1%)
Strand = Plus / Minus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcc-cggc 801
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 655 gaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggaggcggcggc 596
Query: 802 ggcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcagg 861
| || || ||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 595 g-cgcggggtggacctggtggtggtgaacccggtgctggtgcaggggccggcgctgcagc 537
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|| |||||||||||||| | |||| | |||||||||||| ||||||| ||| || |
Sbjct: 536 cgtcggtgaacgccagcctgatgcacgtgctcaagtacctgaacggctccgccaagacgt 477
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||
Sbjct: 476 acgccaacgccgtgcaggcgtacgtgcacgtccgcgacgccgccgacgcgcacgtccgcg 417
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccga--gcg-cgtcctccacc 1038
|||||||| || | ||| ||||||| || |||||||||| ||| ||| |||||||
Sbjct: 416 tcttcgaggcgccgcacgccgccggccggtacatctgcgccgacggcgccgtgctccacc 357
Query: 1039 gcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccc 1090
|||||||||||||| | | ||| |||| ||||||| || |||||||||||
Sbjct: 356 gcgaggacgtcgtcaggacgctccgcaagttcttcccggactaccccgtccc 305
>gb|CW346174.1|CW346174 104_849_11488883_148_36218_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488883, DNA
sequence
Length = 735
Score = 200 bits (101), Expect = 3e-049
Identities = 293/352 (83%), Gaps = 5/352 (1%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcc-cggc 801
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 314 gaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggaggcggcggc 373
Query: 802 ggcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcagg 861
| || || ||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 374 g-cgcggggtggacctggtggtggtgaacccggtgctggtgcaggggccggcgctgcagc 432
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|| |||||||||||||| | |||| | |||||||||||| ||||||| ||| || |
Sbjct: 433 cgtcggtgaacgccagcctgatgcacgtgctcaagtacctgaacggctccgccaagacgt 492
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||
Sbjct: 493 acgccaacgccgtgcaggcgtacgtgcacgtccgcgacgccgccgacgcgcacgtccgcg 552
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccga--gcg-cgtcctccacc 1038
|||||||| || | ||| ||||||| || |||||||||| ||| ||| |||||||
Sbjct: 553 tcttcgaggcgccgcacgccgccggccggtacatctgcgccgacggcgccgtgctccacc 612
Query: 1039 gcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccc 1090
|||||||||||||| | | ||| |||| ||||||| || |||||||||||
Sbjct: 613 gcgaggacgtcgtcaggacgctccgcaagttcttcccggactaccccgtccc 664
Score = 97.6 bits (49), Expect = 3e-018
Identities = 118/141 (83%)
Strand = Plus / Plus
Query: 601 acgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtccatcggcgccg 660
|||| ||||| |||||||||||||| || || || || | || |||||||||||||| |
Sbjct: 85 acgccgcggccgaggccggcacggtccgccgcgtcgtcctgacctcgtccatcggcgcgg 144
Query: 661 tgaccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgctggagcgacc 720
| ||||||| ||||| ||| ||| |||| ||| |||||||||||||||||||||||||
Sbjct: 145 tcgccatggatcccaaccgctcgccggacgccgtcgtcgacgagtcgtgctggagcgacc 204
Query: 721 tcgagttctgcgagaaaacca 741
|||| |||||| |||| ||||
Sbjct: 205 tcgacttctgcaagaagacca 225
>gb|CW480229.1|CW480229 fsbb001f239d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239d02, DNA
sequence
Length = 573
Score = 200 bits (101), Expect = 3e-049
Identities = 293/352 (83%), Gaps = 5/352 (1%)
Strand = Plus / Plus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcc-cggc 801
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 170 gaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggaggcggcggc 229
Query: 802 ggcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcagg 861
| || || ||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 230 g-cgcggggtggacctggtggtggtgaacccggtgctggtgcaggggccggcgctgcagc 288
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|| |||||||||||||| | |||| | |||||||||||| ||||||| ||| || |
Sbjct: 289 cgtcggtgaacgccagcctgatgcacgtgctcaagtacctgaacggctccgccaagacgt 348
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||
Sbjct: 349 acgccaacgccgtgcaggcgtacgtgcacgtccgcgacgccgccgacgcgcacgtccgcg 408
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccga--gcg-cgtcctccacc 1038
|||||||| || | ||| ||||||| || |||||||||| ||| ||| |||||||
Sbjct: 409 tcttcgaggcgccgcacgccgccggccggtacatctgcgccgacggcgccgtgctccacc 468
Query: 1039 gcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccc 1090
|||||||||||||| | | ||| |||| ||||||| || |||||||||||
Sbjct: 469 gcgaggacgtcgtcaggacgctccgcaagttcttcccggactaccccgtccc 520
Score = 75.8 bits (38), Expect = 1e-011
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 664 ccatggaccccaagcgcgggcccgacgtcgtggtcgacgagtcgtgctggagcgacctcg 723
||||||| ||||| ||| ||| |||| ||| ||||||||||||||||||||||||||||
Sbjct: 4 ccatggatcccaaccgctcgccggacgccgtcgtcgacgagtcgtgctggagcgacctcg 63
Query: 724 agttctgcgagaaaacca 741
| |||||| |||| ||||
Sbjct: 64 acttctgcaagaagacca 81
>gb|CW480230.1|CW480230 fsbb001f239d02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239d02, DNA
sequence
Length = 681
Score = 200 bits (101), Expect = 3e-049
Identities = 293/352 (83%), Gaps = 5/352 (1%)
Strand = Plus / Minus
Query: 743 gaactggtactgctacggcaaggcggtggcggagcacgcggcgtgggagacggcc-cggc 801
|||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 629 gaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggaggcggcggc 570
Query: 802 ggcggggcgtggacctggtggtggtgaaccccgtgctggtggtgggccccctgctgcagg 861
| || || ||||||||||||||||||||||| ||||||||| ||| || |||||||
Sbjct: 569 g-cgcggggtggacctggtggtggtgaacccggtgctggtgcaggggccggcgctgcagc 511
Query: 862 cgacggtgaacgccagcatcgcgcacatcctcaagtacctggacggctcggcccgcacct 921
|| |||||||||||||| | |||| | |||||||||||| ||||||| ||| || |
Sbjct: 510 cgtcggtgaacgccagcctgatgcacgtgctcaagtacctgaacggctccgccaagacgt 451
Query: 922 tcgccaacgccgtgcaggcgtacgtggacgtgcgcgacgtggccgacgcgcacctccgcg 981
||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||
Sbjct: 450 acgccaacgccgtgcaggcgtacgtgcacgtccgcgacgccgccgacgcgcacgtccgcg 391
Query: 982 tcttcgagagcccccgcgcgtccggccgccacctctgcgccga--gcg-cgtcctccacc 1038
|||||||| || | ||| ||||||| || |||||||||| ||| ||| |||||||
Sbjct: 390 tcttcgaggcgccgcacgccgccggccggtacatctgcgccgacggcgccgtgctccacc 331
Query: 1039 gcgaggacgtcgtccgcatcctcgccaagctcttccccgagtaccccgtccc 1090
|||||||||||||| | | ||| |||| ||||||| || |||||||||||
Sbjct: 330 gcgaggacgtcgtcaggacgctccgcaagttcttcccggactaccccgtccc 279
>gb|AW283667.1|AW283667 LG1_222_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 386
Score = 178 bits (90), Expect = 1e-042
Identities = 228/271 (84%), Gaps = 21/271 (7%)
Strand = Plus / Plus
Query: 1143 aaccagaagctccgggacctggggctgcagttccggccggtcagccagtcgctttacgac 1202
||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||
Sbjct: 5 aaccagaagctccgggacctgggattggagttccggccggtgagccagtcgctctacgat 64
Query: 1203 acggtgaagaacctccaggagaagggacacctgccggtgctcggagagcggacgacgacg 1262
|||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |
Sbjct: 65 acggtgaagaaccttcaggagaagggccacctgccggtgctcggagagcagacgac---g 121
Query: 1263 gaggccgccgacaaggatgc---ccccacggccgagatgcagcagggagggatcgccatc 1319
||||||| | | |||| || | || | |||||| ||||||||||||| |||||||||
Sbjct: 122 gaggccgtcaaggaggaggccaacgccgccgccgaggtgcagcagggaggaatcgccatc 181
Query: 1320 cgtgcctg----agagggcgatgcc----acacatgaacac---aaagcaatg----ttc 1364
||||| || |||||| |||||| |||||||||||| ||||||||| |||
Sbjct: 182 cgtgcgtgagctagagggagatgccacgtacacatgaacacaaaaaagcaatgttcattc 241
Query: 1365 atactgctgccctgcacctgctgtgtaaaca 1395
||||||||||||||| |||||||||||||||
Sbjct: 242 atactgctgccctgcccctgctgtgtaaaca 272
Score = 73.8 bits (37), Expect = 4e-011
Identities = 67/75 (89%), Gaps = 4/75 (5%)
Strand = Plus / Plus
Query: 1424 tgtaccctaagacttgtaa-cgtcatgttcgttcttgtgaactatag---cgagtgaata 1479
||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 307 tgtaccctaaggcttgtaaacgtaatgttcgttcttgtgaactatagtgatgagtgaata 366
Query: 1480 aaattggttaatgtt 1494
||| |||||||||||
Sbjct: 367 aaaatggttaatgtt 381
>gb|CW134363.1|CW134363 104_518_11117266_148_34819_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117266, DNA
sequence
Length = 619
Score = 174 bits (88), Expect = 2e-041
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 162 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 103
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccag 399
||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 102 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccag 51
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 523 agaatcctaccaaaccccagctaccaactcgatcg 489
>gb|CW183096.1|CW183096 104_598_11164429_148_36664_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164429, DNA
sequence
Length = 677
Score = 174 bits (88), Expect = 2e-041
Identities = 106/112 (94%)
Strand = Plus / Minus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 225 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 166
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccag 399
||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 165 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccag 114
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 586 agaatcctaccaaaccccagctaccaactcgatcg 552
>gb|CW427351.1|CW427351 fsbb001f139e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139e20, DNA
sequence
Length = 596
Score = 174 bits (88), Expect = 2e-041
Identities = 106/112 (94%)
Strand = Plus / Plus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct: 420 gggaacgggcagaccgtgtgcgtcaccggcgcggccgggtacatcgcctcgtggctcgtc 479
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccag 399
||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 480 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccag 531
Score = 46.1 bits (23), Expect = 0.010
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 7 agaatcctaccaaacct-agctaccaactcgatcg 40
|||||||||||||||| |||||||||||||||||
Sbjct: 59 agaatcctaccaaaccccagctaccaactcgatcg 93
>gb|CD431095.1|CD431095 ETH1_6_A10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A10_A002 5', mRNA sequence
Length = 681
Score = 168 bits (85), Expect = 1e-039
Identities = 222/268 (82%)
Strand = Plus / Plus
Query: 507 ggctgccagggcgtcttccacaccgcctcccccgtcaccgacgacccggagcaaatggtg 566
|||||||| ||||||||||| ||||| || ||||| |||||||| || ||| ||||||||
Sbjct: 414 ggctgccacggcgtcttccataccgcgtcgcccgttaccgacgatccagaggaaatggtg 473
Query: 567 gagccggcggtgcgcggcaccgagtacgtgatcaacgcggcggcggaggccggcacggtg 626
||||| |||||| || || ||| | ||| |||| ||||| ||||||||||||||
Sbjct: 474 gagccagcggtgacagggacgcgctacatcatcgacgccgcggccgaggccggcacggtc 533
Query: 627 cggcgggtggtgttcacgtcgtccatcggcgccgtgaccatggaccccaagcgcgggccc 686
|| || || || | || |||||||||||||| || ||||||| ||||| ||| |||
Sbjct: 534 cgccgcgtcgtcctgacctcgtccatcggcgcggtcgccatggatcccaaccgctcgccg 593
Query: 687 gacgtcgtggtcgacgagtcgtgctggagcgacctcgagttctgcgagaaaaccaggaac 746
|||| ||| ||||||||||||||||||||||||||||| |||||| |||| |||| ||||
Sbjct: 594 gacgccgtcgtcgacgagtcgtgctggagcgacctcgacttctgcaagaagaccaagaac 653
Query: 747 tggtactgctacggcaaggcggtggcgg 774
|||||||||||| | |||||||||||||
Sbjct: 654 tggtactgctacnggaaggcggtggcgg 681
Score = 69.9 bits (35), Expect = 7e-010
Identities = 146/183 (79%)
Strand = Plus / Plus
Query: 303 gtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtgaagctgctgctcgag 362
||||||||||||||||| | ||| ||| ||| |||||| | || ||||| |||||||||
Sbjct: 210 gtgtgcgtgaccggcgccggcggctacgtcgggtcgtggatcgtcaagctcctgctcgag 269
Query: 363 aagggatacactgtgaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctc 422
| ||| ||| | || | |||||||| | ||||| || ||| ||||||||||||||||
Sbjct: 270 agggggtacgccgtcagaggcaccgtgcgcaaccccgacgacgcgaagaacgcgcacctg 329
Query: 423 aaggcgctggacggcgccgccgagcggctgatcctctgcaaggccgatctgctggactac 482
| |||||| |||||| | ||| ||||| || ||||||||||||||||| ||||||
Sbjct: 330 agggcgcttcccggcgcgacggagaggctggcgctgtgcaaggccgatctgctcgactac 389
Query: 483 gac 485
|||
Sbjct: 390 gac 392
>gb|CW119145.1|CW119145 104_496_11108601_116_34636_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108601, DNA
sequence
Length = 579
Score = 167 bits (84), Expect = 4e-039
Identities = 105/112 (93%)
Strand = Plus / Minus
Query: 288 gggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcctcgtggttggtg 347
||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||
Sbjct: 157 gggaacgggcagaccgtgtgcgtcactggcgcggccgggtacatcgcctcgtggcttgtc 98
Query: 348 aagctgctgctcgagaagggatacactgtgaagggcaccgtcaggaacccag 399
||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97 aagatgctgctcgagaagggatacactgtcaagggcaccgtcaggaacccag 46
>gb|CW486808.1|CW486808 fsbb001f252e20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252e20, DNA
sequence
Length = 644
Score = 167 bits (84), Expect = 4e-039
Identities = 108/116 (93%)
Strand = Plus / Plus
Query: 1094 caggtgctccgacgaggtgaatccgcggaagcagccgtacaagttctccaaccagaagct 1153
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 529 caggtgctccgacgaggtgaacccgcggaagcagccgtacaagttctcgaaccagaagct 588
Query: 1154 ccgggacctggggctgcagttccggccggtcagccagtcgctttacgacacggtga 1209
|||||||||||| || ||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 589 ccgggacctgggattggagttccggccggtgagccagtcgctctacgatacggtga 644
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 550,554
Number of Sequences: 832831
Number of extensions: 550554
Number of successful extensions: 168284
Number of sequences better than 0.5: 160
Number of HSP's better than 0.5 without gapping: 157
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 167643
Number of HSP's gapped (non-prelim): 528
length of query: 1520
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1500
effective length of database: 474,703,049
effective search space: 712054573500
effective search space used: 712054573500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)