BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012720.2.1
(1130 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine a... 1122 0.0
gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/c... 599 e-169
gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) So... 391 e-106
gb|BZ338903.1|BZ338903 ic28a08.g1 WGS-SbicolorF (JM107 adap... 218 9e-055
gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorgh... 212 5e-053
gb|CW220403.1|CW220403 104_655_11197331_148_37158_048 Sorgh... 143 4e-032
gb|CW249404.1|CW249404 104_711_11222826_116_35044_077 Sorgh... 143 4e-032
gb|BI141267.1|BI141267 IP1_53_E02.g1_A002 Immature pannicle... 133 4e-029
gb|CW238507.1|CW238507 104_695_11216767_148_37525_026 Sorgh... 119 6e-025
gb|CW241395.1|CW241395 104_700_11218745_116_37545_071 Sorgh... 119 6e-025
gb|CW367492.1|CW367492 fsbb001f041a02k0 Sorghum methylation... 119 6e-025
gb|CW241396.1|CW241396 104_700_11218745_148_37542_071 Sorgh... 100 5e-019
gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Me... 96 9e-018
gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Mer... 94 3e-017
gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Mer... 88 2e-015
gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine al... 84 3e-014
gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG... 80 5e-013
gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG... 80 5e-013
gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Mer... 80 5e-013
gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Me... 80 5e-013
gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Me... 80 5e-013
gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Me... 80 5e-013
gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sor... 80 5e-013
gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) So... 80 5e-013
gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) So... 80 5e-013
gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2... 80 5e-013
gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-tr... 80 5e-013
gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum b... 80 5e-013
gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stresse... 80 5e-013
gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Mer... 72 1e-010
gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-tr... 72 1e-010
gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2... 64 3e-008
gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2... 64 3e-008
gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) So... 52 1e-004
gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation... 50 5e-004
gb|BG557895.1|BG557895 EM1_55_H11.b1_A002 Embryo 1 (EM1) So... 50 5e-004
gb|CF760603.1|CF760603 DSAF1_63_D09.b1_A011 Drought-stresse... 50 5e-004
gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation... 44 0.028
gb|CW294732.1|CW294732 104_775_11415340_148_36234_004 Sorgh... 42 0.11
gb|CC059146.1|CC059146 ii19g09.b1 WGS-SbicolorF (DH5a methy... 40 0.43
gb|CW245838.1|CW245838 104_706_11221123_148_35074_068 Sorgh... 40 0.43
gb|CW245839.1|CW245839 104_706_11221123_148_37594_068 Sorgh... 40 0.43
>gb|U12196.1|SBU12196 Sorghum bicolor clone BADH15 betaine aldehyde dehydrogenase mRNA,
complete cds
Length = 1799
Score = 1122 bits (566), Expect = 0.0
Identities = 765/824 (92%), Gaps = 13/824 (1%)
Strand = Plus / Minus
Query: 302 cctggagtgaatgccccttcacagcttagatggaggctggtaccatccccacggttcatc 361
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1593 cctggaatgaatgccccttcacagcttggatggaggctggtaccatccccacggttcatc 1534
Query: 362 cgagcaatacttggtgacttgcttaactgtcaggtagttatcaagaccccattctccgag 421
|||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||
Sbjct: 1533 cgagcaatacttggtgacttgcttcacggtcatgtagttatcaaggccccattctccgag 1474
Query: 422 ctcccgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttg 481
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1473 ctcccgaccaaaca---tccgcttgttccctccccatggagcttggacgaagcatggttg 1417
Query: 482 ggaacaatttatccaaataataccagagtgaagagcctttgaaatgcgctca-cacctct 540
|| || || ||| ||| |||| |||||||||||||||||| |||| |||||||
Sbjct: 1416 cgagcagtt-atc-----aattgcagattgaagagcctttgaaatg-gctcggcacctct 1364
Query: 541 cttgatcattggagatcacggcaccagctaaaccatagtgagtatcatttgcaagttcca 600
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1363 cttgatcactggagatcacggcaccagctaaaccatactgagtatcatttgcaagttcca 1304
Query: 601 cagcttcactatctgtcctaaactccttaacacagatgactggtccaaagacttcctctt 660
|||||||||| ||| |||| || || ||||| |||||||| ||||||||||||||||||
Sbjct: 1303 cagcttcactctctctcctgaattctttaacgcagatgacaggtccaaagacttcctctc 1244
Query: 661 gccaaatttgcattgacgtactaacatctgttataattgtaggttcaagaaagaaccctc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 gccaaatttgcattgacgtactaacatctgttataattgtaggttcaagaaagaaccctc 1184
Query: 721 ttctgagatgctgtggtcggccacctccatacaaaattgtggcaccttcacttcttgcag 780
|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1183 ttttgagatgctgtggtcgggcacctccatacagaattgtggcaccttcacttcttgcag 1124
Query: 781 tcgagatgaacttctttatcttctcgtactgtccttcactgataactgaacccagtctgc 840
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 1123 ttgagatgaacttctttatcttttcgtactgtccttcactgacaactgaacccagtctgc 1064
Query: 841 agccttcctccagtggatctgagacttttatattctttg-cccatgcaaccaatctatcc 899
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1063 cgccttcctccagtggatctgagacttttatattctttgccccatgc-accaatctatcc 1005
Query: 900 aagaatttctttgcaattttctcatgcagcagtaaacgagaagtagcactgcagacttga 959
|||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1004 aagaatttctttgccattttctcatgcagcagtagacgagaagcagcactgcagacttga 945
Query: 960 ccagcattcgcgaagatcccaaacatggtccattcaacagctttgtcaatgtcaccaatg 1019
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 944 ccagcatttggcaagatcccaaacatggtccattcaacagctttgtcaatgtcacgaatg 885
Query: 1020 tcatcaaagacaataagaggacttttcccaccaagctctaatgagacaggcttaaccatt 1079
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 884 tcatcaaagacaataagaggacttttcccaccaagctctaatgaaacgggcttaaccatt 825
Query: 1080 tgggcagctgaaatcattatcctcttaccagtctctgtacttcc 1123
|| ||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 824 tgcgcagctgaagtcattatcctcttaccagtttctgtacttcc 781
Score = 44.1 bits (22), Expect = 0.028
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 234 actgtactgtacacgagctcctgtccatgaacag 267
|||||||| |||| |||||||||||||||||||
Sbjct: 1650 actgtactatacataagctcctgtccatgaacag 1617
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 42 attatccaattatctttatta 62
|||||||||||||||||||||
Sbjct: 1795 attatccaattatctttatta 1775
Score = 40.1 bits (20), Expect = 0.43
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 102 aacttcgaatgataaagagtgcagactaacaa 133
||||||||||||| |||| |||||||||||||
Sbjct: 1775 aacttcgaatgat-aagaatgcagactaacaa 1745
>gb|CD222832.1|CD222832 CCC1_24_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_A06_A007 3', mRNA sequence
Length = 607
Score = 599 bits (302), Expect = e-169
Identities = 430/470 (91%), Gaps = 7/470 (1%)
Strand = Plus / Minus
Query: 228 acgagcactgtactgtacacgagctcctgtccatgaacaggactgatgctgtc---agtt 284
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 470 acgagcactgtactatacataagctcctgtccatgaacaggactgatgctgtcttcagtt 411
Query: 285 aatgatg---cattacattc-cctggagtgaatgccccttcacagcttagatggaggctg 340
||||||| | | ||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct: 410 aatgatgatgcgctccattctcctggaatgaatgccccttcacagcttggatggaggctg 351
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 350 gtaccatccccacggttcatccgagcaatacttggtgacttgcttcacggtcatgtagtt 291
Query: 401 atcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaagg 460
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 290 atcaaggccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccatgg 231
Query: 461 agcttgaacgaagcatggttgggaacaatttatccaaataataccagagtgaagagcctt 520
|||||| |||||||| ||||| || || |||||||||||||| ||||| ||| |||||||
Sbjct: 230 agcttggacgaagcacggttgcgagcagtttatccaaataatgccagattgaggagcctt 171
Query: 521 tgaaatgcgctcacacctctcttgatcattggagatcacggcaccagctaaaccatagtg 580
||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 170 tgaaatgggctcgcacctctcttgatcatcggagatcacggcaccagctaaaccatactg 111
Query: 581 agtatcatttgcaagttccacagcttcactatctgtcctaaactccttaacacagatgac 640
|||||||||||||||||||||||||||||| ||| |||| || || ||||| ||||||||
Sbjct: 110 agtatcatttgcaagttccacagcttcactctctctcctgaattctttaacgcagatgac 51
Query: 641 tggtccaaagacttcctcttgccaaatttgcattgacgtactaacatctg 690
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 50 aggtccaaagacttcctctcgccaaatttgcattgacgtactaacatctg 1
Score = 40.1 bits (20), Expect = 0.43
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 102 aacttcgaatgataaagagtgcagactaacaa 133
||||||||||||| |||| |||||||||||||
Sbjct: 596 aacttcgaatgat-aagaatgcagactaacaa 566
>gb|BG464774.1|BG464774 EM1_34_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 326
Score = 391 bits (197), Expect = e-106
Identities = 298/327 (91%), Gaps = 9/327 (2%)
Strand = Plus / Minus
Query: 253 cctgtccatgaacaggactgatgctgtc---agttaatgatg---cattacattc-cctg 305
||||||| |||||||||||||||||||| ||||||||||| | | ||||| ||||
Sbjct: 326 cctgtccntgaacaggactgatgctgtcttcagttaatgatgatgcgctccattctcctg 267
Query: 306 gagtgaatgccccttcacagcttagatggaggctggtaccatccccacggttcatccgag 365
|| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 266 gaatgaatgccccttcacagcttggatggaggctggtaccntccccacggttcatccgag 207
Query: 366 caatacttggtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcc 425
|||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||
Sbjct: 206 caatacttggtgacttgcttcacggtcatgtagttatcaaggccccattctccgagctcc 147
Query: 426 cgaccaaaaccgctccgcttgttccctccccaaggagcttgaacgaagcatggttgggaa 485
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 146 cgaccaaaaccgctccgcttgttccctccccatggagcttggacgaagcatggttgcgag 87
Query: 486 caatttatccaaataataccagagtgaagagcctttgaaatgcgctcacacctctcttga 545
|| ||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 86 cagtttatcc-aataatgccagattgaagagcctttgaaatgcgctcgcacctctcttga 28
Query: 546 tcattggag-atcacggcaccagctaa 571
|||| |||| |||||||||||||||||
Sbjct: 27 tcatcggagaatcacggcaccagctaa 1
>gb|BZ338903.1|BZ338903 ic28a08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic28a08 5', DNA sequence
Length = 745
Score = 218 bits (110), Expect = 9e-055
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 809 ctgtccttcactgataactgaacccagtctgcagccttcctccagtggatctgagacttt 868
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ctgtccttcactgacaactgaacccagtctgcagccttcctccagtggatctgagacttt 130
Query: 869 tatattctttgcccatgcaaccaatctatccaagaatttctttgcaattttctc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tatattctttgcccatgcaaccaatctatccaagaatttctttgcaattttctc 184
Score = 143 bits (72), Expect = 4e-032
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 catgcagcagtagacgagaagtagcactgcagacttgaccagcatttgcgaagatcccaa 324
Query: 982 acatggtccattcaacagct 1001
||||||||||||||||||||
Sbjct: 325 acatggtccattcaacagct 344
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 519 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 578
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 579 atgaaacaggct 590
>gb|CW294731.1|CW294731 104_775_11415340_116_36233_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415340, DNA
sequence
Length = 700
Score = 212 bits (107), Expect = 5e-053
Identities = 172/191 (90%), Gaps = 7/191 (3%)
Strand = Plus / Minus
Query: 228 acgagcactgtactgtacacgagctcctgtccatgaacaggactgatgctgtc---agtt 284
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 213 acgagcactgtactatacataagctcctgtccatgaacaggactgatgctgtcttcagtt 154
Query: 285 aatgatg---cattacattc-cctggagtgaatgccccttcacagcttagatggaggctg 340
||||||| | | ||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct: 153 aatgatgatgcgctccattctcctggaatgaatgccccttcacagcttggatggaggctg 94
Query: 341 gtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtagtt 400
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 93 gtaccatccccacggttcatccgagcaatacttggtgacttgcttcacggtcatgtagtt 34
Query: 401 atcaagacccc 411
|||||| ||||
Sbjct: 33 atcaaggcccc 23
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 42 attatccaattatctttatta 62
|||||||||||||||||||||
Sbjct: 353 attatccaattatctttatta 333
Score = 40.1 bits (20), Expect = 0.43
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 102 aacttcgaatgataaagagtgcagactaacaa 133
||||||||||||| |||| |||||||||||||
Sbjct: 333 aacttcgaatgat-aagaatgcagactaacaa 303
>gb|CW220403.1|CW220403 104_655_11197331_148_37158_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197331, DNA
sequence
Length = 596
Score = 143 bits (72), Expect = 4e-032
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8 catgcagcagtagacgagaagtagcactgcagacttgaccagcatttgcgaagatcccaa 67
Query: 982 acatggtccattcaacagct 1001
||||||||||||||||||||
Sbjct: 68 acatggtccattcaacagct 87
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 321
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 322 atgaaacaggct 333
Score = 99.6 bits (50), Expect = 5e-019
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1070 cttaaccatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaa 1129
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 507 cttaaccatttgggcagctgaagtcattatcctcttaccagtttctgtacttccagtaaa 566
Query: 1130 a 1130
|
Sbjct: 567 a 567
>gb|CW249404.1|CW249404 104_711_11222826_116_35044_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11222826, DNA
sequence
Length = 638
Score = 143 bits (72), Expect = 4e-032
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 83 catgcagcagtagacgagaagtagcactgcagacttgaccagcatttgcgaagatcccaa 142
Query: 982 acatggtccattcaacagct 1001
||||||||||||||||||||
Sbjct: 143 acatggtccattcaacagct 162
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 337 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 396
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 397 atgaaacaggct 408
Score = 89.7 bits (45), Expect = 5e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1074 accatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagt 1126
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 586 accatttgggcagctgaagtcattatcctcttaccagtttctgtacttccagt 638
>gb|BI141267.1|BI141267 IP1_53_E02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 272
Score = 133 bits (67), Expect = 4e-029
Identities = 119/134 (88%), Gaps = 8/134 (5%)
Strand = Plus / Minus
Query: 228 acgagcactgtactgtacacgagctcctgtccatgaacaggactgatgctgtc---agtt 284
|||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 137 acgagcactgtactatacataagctcctgtccatgaacaggactgatgctgtcttcagtt 78
Query: 285 aatgatgcat----tacattc-cctggagtgaatgccccttcacagcttagatggaggct 339
||||||| || | ||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct: 77 aatgatggatgcgctccattctcctggaatgaatgccccttcacagcttggatggaggct 18
Query: 340 ggtaccatccccac 353
||||||||||||||
Sbjct: 17 ggtaccatccccac 4
Score = 40.1 bits (20), Expect = 0.43
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 102 aacttcgaatgataaagagtgcagactaacaa 133
||||||||||||| |||| |||||||||||||
Sbjct: 257 aacttcgaatgat-aagaatgcagactaacaa 227
>gb|CW238507.1|CW238507 104_695_11216767_148_37525_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216767, DNA
sequence
Length = 694
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 33 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 92
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 93 atgaaacaggct 104
Score = 99.6 bits (50), Expect = 5e-019
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1070 cttaaccatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaa 1129
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 278 cttaaccatttgggcagctgaagtcattatcctcttaccagtttctgtacttccagtaaa 337
Query: 1130 a 1130
|
Sbjct: 338 a 338
>gb|CW241395.1|CW241395 104_700_11218745_116_37545_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218745, DNA
sequence
Length = 495
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 439
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 440 atgaaacaggct 451
Score = 103 bits (52), Expect = 3e-020
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 922 catgcagcagtaaacgagaagtagcactgcagacttgaccagcattcgcgaagatcccaa 981
||||| || ||| |||||||||| |||||| ||||||||||||||| ||||||||||| |
Sbjct: 126 catgccgcggtagacgagaagtaacactgctgacttgaccagcatttgcgaagatcccga 185
Query: 982 acatggtccattcaacagct 1001
||||||||||||||||||||
Sbjct: 186 acatggtccattcaacagct 205
Score = 65.9 bits (33), Expect = 8e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 878 tgcccatgcaaccaatctatccaagaatttctttgcaattttctc 922
|||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 1 tgcccatgcaaccaatctgaccaagaattactttgcaattttctc 45
>gb|CW367492.1|CW367492 fsbb001f041a02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041a02, DNA
sequence
Length = 677
Score = 119 bits (60), Expect = 6e-025
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 1000 ctttgtcaatgtcaccaatgtcatcaaagacaataagaggacttttcccaccaagctcta 1059
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 12 ctttgtcaatgtcacgaatgtcatcaaagacaataagaggacttttgccaccaagctcta 71
Query: 1060 atgagacaggct 1071
|||| |||||||
Sbjct: 72 atgaaacaggct 83
Score = 99.6 bits (50), Expect = 5e-019
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 1070 cttaaccatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaa 1129
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 257 cttaaccatttgggcagctgaagtcattatcctcttaccagtttctgtacttccagtaaa 316
Query: 1130 a 1130
|
Sbjct: 317 a 317
>gb|CW241396.1|CW241396 104_700_11218745_148_37542_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218745, DNA
sequence
Length = 648
Score = 99.6 bits (50), Expect = 5e-019
Identities = 58/61 (95%)
Strand = Plus / Minus
Query: 1070 cttaaccatttgggcagctgaaatcattatcctcttaccagtctctgtacttccagtnaa 1129
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct: 469 cttaaccatttgggcagctgaagtcattatcctcttaccagtttctgtacttccagtaaa 410
Query: 1130 a 1130
|
Sbjct: 409 a 409
>gb|BF586322.1|BF586322 FM1_27_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 711
Score = 95.6 bits (48), Expect = 9e-018
Identities = 263/332 (79%), Gaps = 2/332 (0%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 346 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 287
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 286 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 227
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccctcttctga-gatgctgtggtcg 739
| | ||| || |||||||| ||||||| ||||||||| ||||| | ||||| ||||
Sbjct: 226 gtgatatcagtaataattgttggttcaataaagaaccc-cttctcaagatgcgtcggtct 168
Query: 740 gccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttat 799
||||||| || ||| || |||||||| ||| | ||| |||| ||||||||||| ||
Sbjct: 167 aacacctccggtcagaatagtagcaccttcgcttttggcattcgatatgaacttcttaat 108
Query: 800 cttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatc 859
|||||| |||||||||||||| | ||||| || |||||||| || || || ||||||||
Sbjct: 107 cttctcatactgtccttcactaacaactggcccaagtctgcaaccctcttcaagtggatc 48
Query: 860 tgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || |||||||||||||
Sbjct: 47 tgaaaccttaatatttttggcccatgcaacca 16
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 568 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 509
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 508 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 449
Query: 459 ggagcttg 466
||||||||
Sbjct: 448 ggagcttg 441
>gb|BF421493.1|BF421493 FM1_8_D10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 557
Score = 93.7 bits (47), Expect = 3e-017
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 414 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 355
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 354 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 295
Query: 459 ggagcttgaacgaagcatggttg 481
|||||||| |||||||| |||||
Sbjct: 294 ggagcttggacgaagcagggttg 272
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 192 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 133
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 132 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 73
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 72 gtgatatcagtaataattgttggttcaataaagaaccc 35
>gb|BF421115.1|BF421115 FM1_6_E10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 697
Score = 87.7 bits (44), Expect = 2e-015
Identities = 263/332 (79%), Gaps = 3/332 (0%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 332 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 273
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 272 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 213
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccctcttctga-gatgctgtggtcg 739
| | ||| || |||||||| ||||||| ||||||||| ||||| | ||||| ||||
Sbjct: 212 gtgatatcagtaataattgttggttcaataaagaaccc-cttctcaagatgcgtcggtct 154
Query: 740 gccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttat 799
||||||| || ||| || |||||||| ||| | ||| |||| ||||||||||| ||
Sbjct: 153 aacacctccggtcagaatagtagcaccttcgcttttggcattcgatatgaacttcttaat 94
Query: 800 cttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatc 859
|||||| |||||||||||||| | ||||| || |||||||| || | || |||||||||
Sbjct: 93 cttctcatactgtccttcactaacaactggcccaagtctgcaaccct-cttcagtggatc 35
Query: 860 tgagacttttatattctttgcccatgcaacca 891
||| || || ||||| || |||||||||||||
Sbjct: 34 tgaaaccttaatatttttggcccatgcaacca 3
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 554 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 495
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 494 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 435
Query: 459 ggagcttg 466
||||||||
Sbjct: 434 ggagcttg 427
>gb|U12195.1|SBU12195 Sorghum bicolor clone BADH1 betaine aldehyde dehydrogenase mRNA,
partial cds
Length = 1377
Score = 83.8 bits (42), Expect = 3e-014
Identities = 108/130 (83%)
Strand = Plus / Minus
Query: 762 gcaccttcacttcttgcagtcgagatgaacttctttatcttctcgtactgtccttcactg 821
|||||||| ||| | ||| |||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 791 gcaccttcgcttttggcattcgatatgaacttcttaatcttctcatactgtccttcacta 732
Query: 822 ataactgaacccagtctgcagccttcctccagtggatctgagacttttatattctttgcc 881
| ||||| || |||||||| || || || |||||||| || || || ||||| || |||
Sbjct: 731 acaactggcccaagtctgcaaccctcttcaagtggatccgaaaccttaatatttttggcc 672
Query: 882 catgcaacca 891
||||||||||
Sbjct: 671 catgcaacca 662
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 375 gtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaa 434
||||||||||| || ||||||||||||||| |||| |||||| ||||| || ||||||
Sbjct: 1172 gtgacttgcttgacgctcaggtagttatcaatgcccccttctccaagctcacgtccaaaa 1113
Query: 435 ccgctccgcttgttccctccccaaggagcttg 466
| || ||||||||||| ||||| ||||||||
Sbjct: 1112 tcactgcgcttgttcccaccccagggagcttg 1081
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 977 cccaaacatggtccattcaacagctttgtcaatgtca 1013
|||||||| ||||| |||||||||||||||||||||
Sbjct: 579 cccaaacagagtccactcaacagctttgtcaatgtca 543
>gb|BE355122.1|BE355122 DG1_113_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 511 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 452
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 451 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 392
Query: 459 ggagcttg 466
||||||||
Sbjct: 391 ggagcttg 384
Score = 67.9 bits (34), Expect = 2e-009
Identities = 222/282 (78%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 289 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 230
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 229 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 170
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccctcttctga-gatgctgtggtcg 739
| | ||| || |||||||| ||||||| ||||||||| ||||| | ||||| ||||
Sbjct: 169 gtgatatcagtaataattgttggttcaataaagaaccc-cttctcaagatgcgccggtct 111
Query: 740 gccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttat 799
||||||| || ||| || |||||||| ||| | ||| |||| ||||||||||| ||
Sbjct: 110 aacacctccggtcagaatagtagcaccttcgcttttggcattcgatatgaacttcttaat 51
Query: 800 cttctcgtactgtccttcactgataactgaacccagtctgca 841
|||||| |||||||||||||| | ||||| || ||||||||
Sbjct: 50 cttctcatactgtccttcactaacaactggcccaagtctgca 9
>gb|BE355151.1|BE355151 DG1_113_D02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 513 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 454
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 453 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 394
Query: 459 ggagcttg 466
||||||||
Sbjct: 393 ggagcttg 386
Score = 67.9 bits (34), Expect = 2e-009
Identities = 222/282 (78%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 291 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 232
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 231 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 172
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccctcttctga-gatgctgtggtcg 739
| | ||| || |||||||| ||||||| ||||||||| ||||| | ||||| ||||
Sbjct: 171 gtgatatcagtaataattgttggttcaataaagaaccc-cttctcaagatgcgccggtct 113
Query: 740 gccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttat 799
||||||| || ||| || |||||||| ||| | ||| |||| ||||||||||| ||
Sbjct: 112 aacacctccggtcagaatagtagcaccttcgcttttggcattcgatatgaacttcttaat 53
Query: 800 cttctcgtactgtccttcactgataactgaacccagtctgca 841
|||||| |||||||||||||| | ||||| || ||||||||
Sbjct: 52 cttctcatactgtccttcactaacaactggcccaagtctgca 11
>gb|BF421106.1|BF421106 FM1_6_D11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 624
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 480 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 421
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 420 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccac 361
Query: 459 ggagcttg 466
||||||||
Sbjct: 360 ggagcttg 353
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 618 ctaaactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgac 677
||||| || |||||||| | |||||| |||||||||||||| ||| |||| ||||||
Sbjct: 201 ctaaattctttaacacacaggactggaccaaagacttcctccctccagatttccattgat 142
Query: 678 gtactaacatctgttataattgtaggttcaagaaagaaccc 718
|| | | ||| || |||||||| ||||||| |||||||||
Sbjct: 141 gtggtgatatcagtaataattgttggttcaataaagaaccc 101
Score = 50.1 bits (25), Expect = 5e-004
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 762 gcaccttcacttcttgcagtcgagatgaacttctttatcttctcgtactgtccttca 818
|||||||| ||| | ||| |||| ||||||||||| |||||||| |||||| |||||
Sbjct: 57 gcaccttcgcttttggcattcgatatgaacttcttaatcttctcatactgtacttca 1
>gb|BF588419.1|BF588419 FM1_36_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 539
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 318 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 259
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 258 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 199
Query: 459 ggagcttg 466
||||||||
Sbjct: 198 ggagcttg 191
Score = 40.1 bits (20), Expect = 0.43
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 96 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 37
Query: 621 aactccttaacacagatgactggtccaaagacttcc 656
|| || |||||||| | |||||| ||||||||||||
Sbjct: 36 aattctttaacacacaggactggaccaaagacttcc 1
>gb|BF588427.1|BF588427 FM1_36_E06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 561
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 301 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 242
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 241 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 182
Query: 459 ggagcttg 466
||||||||
Sbjct: 181 ggagcttg 174
>gb|BG051663.1|BG051663 FM1_59_F04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 520
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 375 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 316
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 315 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 256
Query: 459 ggagcttg 466
||||||||
Sbjct: 255 ggagcttg 248
Score = 44.1 bits (22), Expect = 0.028
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 153 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 94
Query: 621 aactccttaacacagatgactggtccaaagacttcctc 658
|| || |||||||| | |||||| ||||||||||||||
Sbjct: 93 aattctttaacacacaggactggaccaaagacttcctc 56
>gb|BG103577.1|BG103577 RHIZ2_38_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 612
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 469 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 410
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 409 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 350
Query: 459 ggagcttg 466
||||||||
Sbjct: 349 ggagcttg 342
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 247 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 188
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 187 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 128
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 127 gtgatatcagtaataattgttggttcaataaagaaccc 90
>gb|BG158631.1|BG158631 RHIZ2_43_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 549
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 405 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 346
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 345 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 286
Query: 459 ggagcttg 466
||||||||
Sbjct: 285 ggagcttg 278
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 183 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 124
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 123 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 64
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 63 gtgatatcagtaataattgttggttcaataaagaaccc 26
>gb|BG158640.1|BG158640 RHIZ2_43_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 579
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 436 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 377
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 376 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 317
Query: 459 ggagcttg 466
||||||||
Sbjct: 316 ggagcttg 309
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 214 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 155
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 154 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 95
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 94 gtgatatcagtaataattgttggttcaataaagaaccc 57
>gb|BG158641.1|BG158641 RHIZ2_43_B08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 548
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 405 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 346
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 345 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 286
Query: 459 ggagcttg 466
||||||||
Sbjct: 285 ggagcttg 278
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 183 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 124
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 123 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 64
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 63 gtgatatcagtaataattgttggttcaataaagaaccc 26
>gb|BG240899.1|BG240899 OV1_39_F06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 352 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 293
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 292 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 233
Query: 459 ggagcttg 466
||||||||
Sbjct: 232 ggagcttg 225
Score = 44.1 bits (22), Expect = 0.028
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 130 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 71
Query: 621 aactccttaacacagatgactggtccaaagacttcctc 658
|| || |||||||| | |||||| ||||||||||||||
Sbjct: 70 aattctttaacacacaggactggaccaaagacttcctc 33
>gb|BG356536.1|BG356536 EM1_23_F09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 484
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 351 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 292
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 291 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 232
Query: 459 ggagcttg 466
||||||||
Sbjct: 231 ggagcttg 224
Score = 44.1 bits (22), Expect = 0.028
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 129 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 70
Query: 621 aactccttaacacagatgactggtccaaagacttcctc 658
|| || |||||||| | |||||| ||||||||||||||
Sbjct: 69 aattctttaacacacaggactggaccaaagacttcctc 32
>gb|BG463356.1|BG463356 EM1_48_E07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 680
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 548 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 489
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 488 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 429
Query: 459 ggagcttg 466
||||||||
Sbjct: 428 ggagcttg 421
Score = 77.8 bits (39), Expect = 2e-012
Identities = 257/327 (78%), Gaps = 2/327 (0%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 326 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 267
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 266 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 207
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccctcttctga-gatgctgtggtcg 739
| | ||| || |||||||| ||||||| ||||||||| ||||| | ||||| ||||
Sbjct: 206 gtgatatcagtaataattgttggttcaataaagaaccc-cttctcaagatgcgccggtct 148
Query: 740 gccacctccatacaaaattgtggcaccttcacttcttgcagtcgagatgaacttctttat 799
||||||| || ||| || |||||||| ||| | ||| |||| ||||||||||| ||
Sbjct: 147 aacacctccggtcagaatagtagcaccttcgcttttggcattcgatatgaacttcttaat 88
Query: 800 cttctcgtactgtccttcactgataactgaacccagtctgcagccttcctccagtggatc 859
|||||| |||||||||||||| | ||||| || |||||||| || || || ||||||||
Sbjct: 87 cttctcatactgtccttcactaacaactggcccaagtctgcaaccctcttcaagtggatc 28
Query: 860 tgagacttttatattctttgcccatgc 886
|| || || ||||| || ||||||||
Sbjct: 27 cgaaaccttaatatttttggcccatgc 1
>gb|BG558087.1|BG558087 RHIZ2_66_E12.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 542
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 296 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 237
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 236 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 177
Query: 459 ggagcttg 466
||||||||
Sbjct: 176 ggagcttg 169
>gb|BG560788.1|BG560788 RHIZ2_64_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 557
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 298 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 239
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 238 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 179
Query: 459 ggagcttg 466
||||||||
Sbjct: 178 ggagcttg 171
>gb|CB928935.1|CB928935 ABA1_38_H01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_38_H01_A012 3', mRNA sequence
Length = 565
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 340 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 281
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 280 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 221
Query: 459 ggagcttg 466
||||||||
Sbjct: 220 ggagcttg 213
Score = 44.1 bits (22), Expect = 0.028
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 118 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 59
Query: 621 aactccttaacacagatgactggtccaaagacttcctc 658
|| || |||||||| | |||||| ||||||||||||||
Sbjct: 58 aattctttaacacacaggactggaccaaagacttcctc 21
>gb|CF482017.1|CF482017 POL1_76_C05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_76_C05_A002 3', mRNA sequence
Length = 591
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 414 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 355
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 354 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 295
Query: 459 ggagcttg 466
||||||||
Sbjct: 294 ggagcttg 287
Score = 44.1 bits (22), Expect = 0.028
Identities = 79/98 (80%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 192 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 133
Query: 621 aactccttaacacagatgactggtccaaagacttcctc 658
|| || |||||||| | |||||| ||||||||||||||
Sbjct: 132 aattctttaacacacaggactggaccaaagacttcctc 95
>gb|CF771940.1|CF771940 DSBF1_26_D06.g9_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_26_D06_A010 3', mRNA sequence
Length = 317
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 339 tggtaccatccccacggttcatccgagcaatacttggtgacttgcttaactgtcaggtag 398
|||||||| |||||||| ||||| ||| |||| ||||||||||| || ||||||||
Sbjct: 155 tggtaccaaccccacggctcatcagagatgtactccgtgacttgcttgacgctcaggtag 96
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 95 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 36
Query: 459 ggagcttg 466
||||||||
Sbjct: 35 ggagcttg 28
>gb|BF421116.1|BF421116 FM1_6_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 558
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 375 gtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaa 434
||||||||||| || ||||||||||||||| |||| |||||| ||||| || |||||
Sbjct: 383 gtgacttgcttgacgctcaggtagttatcaatgcccccttctccaagctcacgtccaaat 324
Query: 435 ccgctccgcttgttccctccccaaggagcttg 466
|| || ||||||||||| ||||| ||||||||
Sbjct: 323 ccactgcgcttgttcccaccccagggagcttg 292
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 197 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 138
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 137 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 78
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 77 gtgatatcagtaataattgttggttcaataaagaaccc 40
>gb|CB924928.1|CB924928 ABA1_29_B08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B08_A012 3', mRNA sequence
Length = 573
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 375 gtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaa 434
||||||||||| || ||||||||||||||| |||| |||||| ||||| || |||||
Sbjct: 373 gtgacttgcttgacgctcaggtagttatcaatgcccccttctccaagctcacgtccaaat 314
Query: 435 ccgctccgcttgttccctccccaaggagcttg 466
|| || ||||||||||| ||||| ||||||||
Sbjct: 313 ccactgcgcttgttcccaccccagggagcttg 282
Score = 54.0 bits (27), Expect = 3e-005
Identities = 126/159 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 187 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 128
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 127 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 68
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccct 719
| | ||| || |||||||| ||||||| ||||||||||
Sbjct: 67 gtgatatcagtaataattgttggttcaataaagaaccct 29
>gb|BG487960.1|BG487960 RHIZ2_61_D10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 409
Score = 63.9 bits (32), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 375 gtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaa 434
||||||||||| || ||||||||||||||| |||| || ||| ||||| || |||||
Sbjct: 210 gtgacttgcttgaccctcaggtagttatcaatgcccccttttccaagctcacgtccaaat 151
Query: 435 ccgctccgcttgttccctccccaaggagcttg 466
|| || ||||||||||| ||||| ||||||||
Sbjct: 150 ccactgcgcttgttcccaccccagggagcttg 119
>gb|BG559002.1|BG559002 RHIZ2_53_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 321
Score = 63.9 bits (32), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 375 gtgacttgcttaactgtcaggtagttatcaagaccccattctccgagctcccgaccaaaa 434
||||||||||| || ||||||||||||||| |||| || ||| ||||| || |||||
Sbjct: 162 gtgacttgcttgacgctcaggtagttatcaatgcccccttttccaagctcacgtccaaat 103
Query: 435 ccgctccgcttgttccctccccaaggagcttg 466
|| || ||||||||||| ||||| ||||||||
Sbjct: 102 ccactgcgcttgttcccaccccagggagcttg 71
>gb|BG557719.1|BG557719 EM1_55_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 323
Score = 52.0 bits (26), Expect = 1e-004
Identities = 125/158 (79%)
Strand = Plus / Minus
Query: 561 gcaccagctaaaccatagtgagtatcatttgcaagttccacagcttcactatctgtccta 620
|||||||| |||||||| || ||||| || || ||||| | |||||| || || |||
Sbjct: 161 gcaccagccaaaccatactgtgtatcgttggccagttcaatggcttcatcttcagtgcta 102
Query: 621 aactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgacgta 680
|| || |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 101 aattctttaacacacaggactggaccaaagacttcctccctccagatttccattgatgtg 42
Query: 681 ctaacatctgttataattgtaggttcaagaaagaaccc 718
| | ||| || |||||||| ||||||| |||||||||
Sbjct: 41 gtgatatcagtaataattgttggttcaataaagaaccc 4
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 399 ttatcaagaccccattctccgagctcccgaccaaaaccgctccgcttgttccctccccaa 458
||||||| |||| |||||| ||||| || ||||| || || ||||||||||| |||||
Sbjct: 323 ttatcaatgcccccttctccaagctcacgtccaaatccactgcgcttgttcccaccccag 264
Query: 459 ggagcttg 466
||||||||
Sbjct: 263 ggagcttg 256
>gb|CW377044.1|CW377044 fsbb001f055d03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 703
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 618 ctaaactccttaacacagatgactggtccaaagacttcctcttgccaaatttgcattgac 677
||||| || |||||||| | |||||| |||||||||||||| ||| |||| ||||||
Sbjct: 208 ctaaattctttaacacacaggactggaccaaagacttcctccctccagatttccattgat 149
Query: 678 gtactaacatctgttataattgtaggttcaagaaagaaccc 718
|| | | ||| || |||||||| ||||||| |||||||||
Sbjct: 148 gtggtgatatcagtaataattgttggttcaataaagaaccc 108
>gb|BG557895.1|BG557895 EM1_55_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 485
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 977 cccaaacatggtccattcaacagctttgtcaatgtca 1013
|||||||| ||||| |||||||||||||||||||||
Sbjct: 439 cccaaacagagtccactcaacagctttgtcaatgtca 403
>gb|CF760603.1|CF760603 DSAF1_63_D09.b1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_63_D09_A011 5', mRNA sequence
Length = 489
Score = 50.1 bits (25), Expect = 5e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 977 cccaaacatggtccattcaacagctttgtcaatgtca 1013
|||||||| ||||| |||||||||||||||||||||
Sbjct: 380 cccaaacagagtccactcaacagctttgtcaatgtca 344
>gb|CW377043.1|CW377043 fsbb001f055d03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055d03, DNA
sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.028
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 413 ttctccgagctcccgaccaaaaccgctccgcttgttccctccccaaggagcttg 466
|||||| ||||| || ||||| || || ||||||||||| ||||| ||||||||
Sbjct: 58 ttctccaagctcacgtccaaatccactgcgcttgttcccaccccagggagcttg 111
>gb|CW294732.1|CW294732 104_775_11415340_148_36234_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415340, DNA
sequence
Length = 738
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 attatccaattatctttatta 62
|||||||||||||||||||||
Sbjct: 580 attatccaattatctttatta 600
Score = 40.1 bits (20), Expect = 0.43
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 102 aacttcgaatgataaagagtgcagactaacaa 133
||||||||||||| |||| |||||||||||||
Sbjct: 600 aacttcgaatgat-aagaatgcagactaacaa 630
>gb|CC059146.1|CC059146 ii19g09.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii19g09, DNA sequence
Length = 797
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 599 cacagcttcactatctgtcc 618
||||||||||||||||||||
Sbjct: 781 cacagcttcactatctgtcc 762
>gb|CW245838.1|CW245838 104_706_11221123_148_35074_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221123, DNA
sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 41 aattatccaattatctttat 60
||||||||||||||||||||
Sbjct: 515 aattatccaattatctttat 496
>gb|CW245839.1|CW245839 104_706_11221123_148_37594_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221123, DNA
sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 41 aattatccaattatctttat 60
||||||||||||||||||||
Sbjct: 515 aattatccaattatctttat 496
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 283,744
Number of Sequences: 832831
Number of extensions: 283744
Number of successful extensions: 73841
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73710
Number of HSP's gapped (non-prelim): 121
length of query: 1130
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1110
effective length of database: 474,703,049
effective search space: 526920384390
effective search space used: 526920384390
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)