BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493751.2.1
(577 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW311858.1|CW311858 104_801_11470450_116_36284_039 Sorgh... 622 e-177
gb|BF656429.1|BF656429 FM1_45_G05.g2_A003 Floral-Induced Me... 264 8e-069
gb|CW311859.1|CW311859 104_801_11470450_148_36283_039 Sorgh... 159 3e-037
gb|CD220111.1|CD220111 CCC1_65_E12.b1_A007 Callus culture/c... 54 1e-005
gb|CD220773.1|CD220773 CCC1_69_F11.b1_A007 Callus culture/c... 54 1e-005
gb|CD221034.1|CD221034 CCC1_73_A08.b1_A007 Callus culture/c... 54 1e-005
gb|CD221500.1|CD221500 CCC1_55_C11.b1_A007 Callus culture/c... 54 1e-005
gb|CD221858.1|CD221858 CCC1_71_D05.b1_A007 Callus culture/c... 54 1e-005
gb|CD221935.1|CD221935 CCC1_1_C02.b1_A007 Callus culture/ce... 54 1e-005
gb|CD222131.1|CD222131 CCC1_2_F09.b1_A007 Callus culture/ce... 54 1e-005
gb|CD222280.1|CD222280 CCC1_21_A10.b1_A007 Callus culture/c... 54 1e-005
gb|CD222336.1|CD222336 CCC1_21_D02.b1_A007 Callus culture/c... 54 1e-005
gb|CD222629.1|CD222629 CCC1_23_C01.b1_A007 Callus culture/c... 54 1e-005
gb|CD222966.1|CD222966 CCC1_25_G12.b1_A007 Callus culture/c... 54 1e-005
gb|CD223421.1|CD223421 CCC1_28_H09.b1_A007 Callus culture/c... 54 1e-005
gb|CD223475.1|CD223475 CCC1_28_B07.b1_A007 Callus culture/c... 54 1e-005
gb|CD223608.1|CD223608 CCC1_29_G11.b1_A007 Callus culture/c... 54 1e-005
gb|CD223646.1|CD223646 CCC1_29_H12.b1_A007 Callus culture/c... 54 1e-005
gb|CD225074.1|CD225074 CCC1_38_E09.b1_A007 Callus culture/c... 54 1e-005
gb|CD226223.1|CD226223 CCC1_44_B02.b1_A007 Callus culture/c... 54 1e-005
gb|CD226518.1|CD226518 CCC1_46_H06.b1_A007 Callus culture/c... 54 1e-005
gb|CD226526.1|CD226526 CCC1_46_G09.b1_A007 Callus culture/c... 54 1e-005
gb|CD226953.1|CD226953 CCC1_49_C06.b1_A007 Callus culture/c... 54 1e-005
gb|CD226954.1|CD226954 CCC1_49_G07.b1_A007 Callus culture/c... 54 1e-005
gb|CD226956.1|CD226956 CCC1_49_E05.b1_A007 Callus culture/c... 54 1e-005
gb|CD227835.1|CD227835 CCC1_56_C09.b1_A007 Callus culture/c... 54 1e-005
gb|CD228000.1|CD228000 CCC1_5_G01.b1_A007 Callus culture/ce... 54 1e-005
gb|CD228158.1|CD228158 CCC1_6_E08.b1_A007 Callus culture/ce... 54 1e-005
gb|CD228201.1|CD228201 CCC1_6_H08.b1_A007 Callus culture/ce... 54 1e-005
gb|CD228316.1|CD228316 CCC1_7_A10.b1_A007 Callus culture/ce... 54 1e-005
gb|CD228501.1|CD228501 CCC1_8_G02.b1_A007 Callus culture/ce... 54 1e-005
gb|CD228819.1|CD228819 CCC1_10_C04.b1_A007 Callus culture/c... 54 1e-005
gb|CD228961.1|CD228961 CCC1_11_D07.b1_A007 Callus culture/c... 54 1e-005
gb|CD229469.1|CD229469 CCC1_16_D07.b1_A007 Callus culture/c... 54 1e-005
gb|CL181415.1|CL181415 104_392_10896741_116_31926_117 Sorgh... 50 2e-004
gb|CW095114.1|CW095114 104_460_11001108_116_34327_048 Sorgh... 50 2e-004
gb|CW428960.1|CW428960 fsbb001f141p05f0 Sorghum methylation... 50 2e-004
gb|CW480419.1|CW480419 fsbb001f239h16f0 Sorghum methylation... 50 2e-004
gb|AW679645.1|AW679645 WS1_30_H04.g1_A002 Water-stressed 1 ... 50 2e-004
gb|CD423755.1|CD423755 SA1_1_D03.b1_A002 Salicylic acid-tre... 50 2e-004
gb|CF429739.1|CF429739 PH1_24_A07.b1_A002 Phosphorous-defic... 50 2e-004
gb|CN128120.1|CN128120 RHOH1_27_D07.b1_A002 Acid- and alkal... 50 2e-004
gb|CN128186.1|CN128186 RHOH1_27_D07.g1_A002 Acid- and alkal... 50 2e-004
gb|CN131941.1|CN131941 OX1_3_D12.b1_A002 Oxidatively-stress... 50 2e-004
gb|CN132028.1|CN132028 OX1_3_D12.g1_A002 Oxidatively-stress... 50 2e-004
gb|CN132140.1|CN132140 OX1_4_G04.b1_A002 Oxidatively-stress... 50 2e-004
gb|CN140635.1|CN140635 OX1_45_D09.g1_A002 Oxidatively-stres... 50 2e-004
gb|CN148808.1|CN148808 WOUND1_58_H10.g1_A002 Wounded leaves... 50 2e-004
gb|AY047606.1| Sorghum bicolor beta-1,3-glucanase mRNA, par... 50 2e-004
gb|CW160750.1|CW160750 104_567_11150049_116_36418_041 Sorgh... 46 0.004
gb|CW195661.1|CW195661 104_619_11180757_148_36801_089 Sorgh... 46 0.004
gb|CW196726.1|CW196726 104_620_11181317_116_36809_017 Sorgh... 46 0.004
gb|CW196727.1|CW196727 104_620_11181317_148_36810_017 Sorgh... 46 0.004
gb|CW371172.1|CW371172 fsbb001f046i03k0 Sorghum methylation... 46 0.004
gb|CW449574.1|CW449574 fsbb001f183m15f0 Sorghum methylation... 46 0.004
gb|CW478486.1|CW478486 fsbb001f236g11f0 Sorghum methylation... 46 0.004
gb|BF176986.1|BF176986 EM1_2_B09.g1_A002 Embryo 1 (EM1) Sor... 46 0.004
gb|BG273153.1|BG273153 OV2_25_A07.g1_A002 Ovary 2 (OV2) Sor... 46 0.004
gb|BG356848.1|BG356848 OV2_10_G05.g1_A002 Ovary 2 (OV2) Sor... 46 0.004
gb|BG463986.1|BG463986 EM1_52_C06.g1_A002 Embryo 1 (EM1) So... 46 0.004
gb|BI097918.1|BI097918 IP1_29_F09.g1_A002 Immature pannicle... 46 0.004
gb|BG355902.2|BG355902 EM1_18_B01.g1_A002 Embryo 1 (EM1) So... 46 0.004
gb|CD224947.1|CD224947 CCC1_37_G01.b1_A007 Callus culture/c... 46 0.004
gb|CW083802.1|CW083802 104_426_10945393_114_32374_011 Sorgh... 42 0.055
gb|CW164230.1|CW164230 104_572_11151877_116_36465_061 Sorgh... 42 0.055
gb|CW453358.1|CW453358 fsbb001f197f07k0 Sorghum methylation... 42 0.055
gb|AW745775.1|AW745775 WS1_37_G08.b1_A002 Water-stressed 1 ... 42 0.055
gb|AW745834.1|AW745834 WS1_37_G08.g1_A002 Water-stressed 1 ... 42 0.055
gb|BE592391.1|BE592391 WS1_94_B08.g1_A002 Water-stressed 1 ... 42 0.055
gb|BE592525.1|BE592525 WS1_94_B08.b1_A002 Water-stressed 1 ... 42 0.055
gb|CF757627.1|CF757627 DSAF1_20_C03.g1_A011 Drought-stresse... 42 0.055
gb|CF758211.1|CF758211 DSAF1_28_H09.g1_A011 Drought-stresse... 42 0.055
gb|CF759672.1|CF759672 DSAF1_48_C08.b1_A011 Drought-stresse... 42 0.055
gb|CF761391.1|CF761391 DSAF1_74_E09.b1_A011 Drought-stresse... 42 0.055
gb|CF761658.1|CF761658 DSAF1_79_C07.b1_A011 Drought-stresse... 42 0.055
gb|CF771054.1|CF771054 DSBF1_13_C08.g1_A010 Drought-stresse... 42 0.055
gb|CN138742.1|CN138742 OX1_13_D10.g1_A002 Oxidatively-stres... 42 0.055
gb|CN140126.1|CN140126 OX1_34_F01.b1_A002 Oxidatively-stres... 42 0.055
gb|CN140206.1|CN140206 OX1_34_F01.g1_A002 Oxidatively-stres... 42 0.055
gb|CN148722.1|CN148722 WOUND1_58_H10.b1_A002 Wounded leaves... 42 0.055
gb|CW221109.1|CW221109 104_656_11197722_116_37172_079 Sorgh... 40 0.22
gb|CN137153.1|CN137153 OX1_55_B06.g1_A002 Oxidatively-stres... 40 0.22
>gb|CW311858.1|CW311858 104_801_11470450_116_36284_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470450, DNA
sequence
Length = 672
Score = 622 bits (314), Expect = e-177
Identities = 451/496 (90%), Gaps = 3/496 (0%)
Strand = Plus / Minus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 504 cctaccctttcatcagctacgtcaacgacccggccaacgtgcagctcgcgtacgcgctct 445
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacctgttcgacg 125
|||| || ||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 tcggcgccggcgccgcgcccgtgcaggacggcgcgctggtgtacaccaacctgttcgacg 385
Query: 126 ccacggtagacgcgctggtggccgcgctggagaaggaggggttcggcggcgtgttgttcg 185
|||| || |||||||||||||||||||||||||| ||||||||||| | |||| | |||
Sbjct: 384 ccaccgtggacgcgctggtggccgcgctggagaaagaggggttcggtgccgtgccggtcg 325
Query: 186 cggtgaccgagaccgggtggccaaccgcggggcacccggccgccaccccgcagaacgcca 245
| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 324 ccgtgaccgagaccgggtggcccaccgcggggcacccggccgcgaccccgcagaacgccg 265
Query: 246 cagcgtacaacgccaagattgtggagaggccggcgcgcggcgtcggcacgccgaagcggc 305
| ||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 264 cggcgtacaacgccaagatcgtggagagggcggtgcgcggcgtcggcacgcccaagcggc 205
Query: 306 caaaagaaaccgtggaggtgttcctgttcgacttgtacgacgaggacggcaagcccggcc 365
| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ccggcgtgcccgtggaggtgttcctgttcgacctgtacgacgaggacggcaagcccggcc 145
Query: 366 ccgagttcgagcgccactttggcatcttcagggcggacggcagtaaggcgtatgacatca 425
||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 144 ccgagttcgagcgccactttggcatcttcagagcggacggcggcaaggcgtatgacatca 85
Query: 426 actttgcctagagctggtagtttctggagcgatggacggc---ttgttgattagtggatc 482
||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||
Sbjct: 84 actttgcctagagctcatagtttctggagtgatggacggctaatcgttgattagtggatc 25
Query: 483 aactggtgtatgctga 498
||||| | ||||||||
Sbjct: 24 aactgctatatgctga 9
>gb|BF656429.1|BF656429 FM1_45_G05.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 319
Score = 264 bits (133), Expect = 8e-069
Identities = 192/211 (90%), Gaps = 3/211 (1%)
Strand = Plus / Plus
Query: 280 gcgcggcgtcggcacgccgaagcggccaaaagaaaccgtggaggtgttcctgttcgactt 339
|||||||||||||||||| |||||||| | ||||||||||||||||||||||| |
Sbjct: 2 gcgcggcgtcggcacgcccaagcggcccggcgtgcccgtggaggtgttcctgttcgacct 61
Query: 340 gtacgacgaggacggcaagcccggccccgagttcgagcgccactttggcatcttcagggc 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 62 gtacgacgaggacggcaagcccggccccgagttcgagcgccgctttggcatcttcagggc 121
Query: 400 ggacggcagtaaggcgtatgacatcaactttgcctagagctggtagtttctggagcgatg 459
||||||| | |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 122 ggacggcggcaaggcgtatgacatcaactttgcctagagctgatagtttctcgagtgatg 181
Query: 460 gacggc---ttgttgattagtggatcaactg 487
|||||| | ||||||||||||||||||||
Sbjct: 182 gacggctaatcgttgattagtggatcaactg 212
>gb|CW311859.1|CW311859 104_801_11470450_148_36283_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470450, DNA
sequence
Length = 717
Score = 159 bits (80), Expect = 3e-037
Identities = 104/112 (92%)
Strand = Plus / Plus
Query: 6 cctaccctttcatcagccacgtgaacgacccggcgaacgtgcagctcgcgtacgcgctct 65
||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 606 cctaccctttcatcagctacgtcaacgacccggccaacgtgcagctcgcgtacgcgctct 665
Query: 66 tcggagcgggcgcggcgccggtgcaggacggcgcgctggtgtacacgaacct 117
|||| || ||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 666 tcggcgccggcgccgcgcccgtgcaggacggcgcgctggtgtacaccaacct 717
>gb|CD220111.1|CD220111 CCC1_65_E12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_65_E12_A007 3', mRNA sequence
Length = 649
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 137 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 191
>gb|CD220773.1|CD220773 CCC1_69_F11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_F11_A007 3', mRNA sequence
Length = 530
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 26 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 80
>gb|CD221034.1|CD221034 CCC1_73_A08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_73_A08_A007 3', mRNA sequence
Length = 597
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 85 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 139
>gb|CD221500.1|CD221500 CCC1_55_C11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_C11_A007 3', mRNA sequence
Length = 596
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 84 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 138
>gb|CD221858.1|CD221858 CCC1_71_D05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_71_D05_A007 3', mRNA sequence
Length = 540
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 27 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 81
>gb|CD221935.1|CD221935 CCC1_1_C02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_1_C02_A007 3', mRNA sequence
Length = 566
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 54 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 108
>gb|CD222131.1|CD222131 CCC1_2_F09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_2_F09_A007 3', mRNA sequence
Length = 622
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 138 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 192
>gb|CD222280.1|CD222280 CCC1_21_A10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_A10_A007 3', mRNA sequence
Length = 639
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 135 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 189
>gb|CD222336.1|CD222336 CCC1_21_D02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_D02_A007 3', mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 155 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 209
>gb|CD222629.1|CD222629 CCC1_23_C01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_C01_A007 3', mRNA sequence
Length = 610
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 105 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 159
>gb|CD222966.1|CD222966 CCC1_25_G12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_G12_A007 3', mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 83 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 137
>gb|CD223421.1|CD223421 CCC1_28_H09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_28_H09_A007 3', mRNA sequence
Length = 609
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 103 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 157
>gb|CD223475.1|CD223475 CCC1_28_B07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_28_B07_A007 3', mRNA sequence
Length = 624
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 111 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 165
>gb|CD223608.1|CD223608 CCC1_29_G11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_G11_A007 3', mRNA sequence
Length = 597
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 85 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 139
>gb|CD223646.1|CD223646 CCC1_29_H12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_29_H12_A007 3', mRNA sequence
Length = 650
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 143 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 197
>gb|CD225074.1|CD225074 CCC1_38_E09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_E09_A007 3', mRNA sequence
Length = 546
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 39 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 93
>gb|CD226223.1|CD226223 CCC1_44_B02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_B02_A007 3', mRNA sequence
Length = 658
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 152 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 206
>gb|CD226518.1|CD226518 CCC1_46_H06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_46_H06_A007 3', mRNA sequence
Length = 663
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 155 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 209
>gb|CD226526.1|CD226526 CCC1_46_G09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_46_G09_A007 3', mRNA sequence
Length = 648
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 129 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 183
>gb|CD226953.1|CD226953 CCC1_49_C06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_49_C06_A007 3', mRNA sequence
Length = 600
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 85 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 139
>gb|CD226954.1|CD226954 CCC1_49_G07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_49_G07_A007 3', mRNA sequence
Length = 649
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 137 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 191
>gb|CD226956.1|CD226956 CCC1_49_E05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_49_E05_A007 3', mRNA sequence
Length = 621
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 111 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 165
>gb|CD227835.1|CD227835 CCC1_56_C09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_56_C09_A007 3', mRNA sequence
Length = 646
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 134 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 188
>gb|CD228000.1|CD228000 CCC1_5_G01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_G01_A007 3', mRNA sequence
Length = 510
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 26 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 80
>gb|CD228158.1|CD228158 CCC1_6_E08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_E08_A007 3', mRNA sequence
Length = 646
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 134 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 188
>gb|CD228201.1|CD228201 CCC1_6_H08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_H08_A007 3', mRNA sequence
Length = 609
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 105 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 159
>gb|CD228316.1|CD228316 CCC1_7_A10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_A10_A007 3', mRNA sequence
Length = 597
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 113 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 167
>gb|CD228501.1|CD228501 CCC1_8_G02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_8_G02_A007 3', mRNA sequence
Length = 532
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 48 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 102
>gb|CD228819.1|CD228819 CCC1_10_C04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C04_A007 3', mRNA sequence
Length = 614
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 105 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 159
>gb|CD228961.1|CD228961 CCC1_11_D07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_11_D07_A007 3', mRNA sequence
Length = 572
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 88 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 142
>gb|CD229469.1|CD229469 CCC1_16_D07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_16_D07_A007 3', mRNA sequence
Length = 669
Score = 54.0 bits (27), Expect = 1e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || ||||||||||||||||
Sbjct: 166 tacaccaacctgttcgacgccatggtggacgccgtcgtcgccgcgctggagaagg 220
>gb|CL181415.1|CL181415 104_392_10896741_116_31926_117 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10896741, DNA
sequence
Length = 546
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
||||||||||||||||||| |||||||||
Sbjct: 119 gctggtgtacacgaacctgctcgacgcca 91
>gb|CW095114.1|CW095114 104_460_11001108_116_34327_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001108, DNA
sequence
Length = 628
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 404 gctggtgtacacgaacctcttcgacgcca 376
>gb|CW428960.1|CW428960 fsbb001f141p05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f141p05, DNA
sequence
Length = 721
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 573 gctggtgtacacgaacctcttcgacgcca 545
>gb|CW480419.1|CW480419 fsbb001f239h16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239h16, DNA
sequence
Length = 563
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 31 gctggtgtacacgaacctcttcgacgcca 3
>gb|AW679645.1|AW679645 WS1_30_H04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 508
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 48 gctggtgtacacgaacctcttcgacgcca 76
>gb|CD423755.1|CD423755 SA1_1_D03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_1_D03_A002 3', mRNA sequence
Length = 589
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 173 gctggtgtacacgaacctcttcgacgcca 201
>gb|CF429739.1|CF429739 PH1_24_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_24_A07_A002 3', mRNA sequence
Length = 609
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 149 gctggtgtacacgaacctcttcgacgcca 177
>gb|CN128120.1|CN128120 RHOH1_27_D07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D07_A002 3', mRNA sequence
Length = 705
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 243 gctggtgtacacgaacctcttcgacgcca 271
>gb|CN128186.1|CN128186 RHOH1_27_D07.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_D07_A002 5', mRNA sequence
Length = 704
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 663 gctggtgtacacgaacctcttcgacgcca 691
>gb|CN131941.1|CN131941 OX1_3_D12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_D12_A002 3', mRNA sequence
Length = 503
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 43 gctggtgtacacgaacctcttcgacgcca 71
>gb|CN132028.1|CN132028 OX1_3_D12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_3_D12_A002 5', mRNA sequence
Length = 721
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 693 gctggtgtacacgaacctcttcgacgcca 721
>gb|CN132140.1|CN132140 OX1_4_G04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_4_G04_A002 3', mRNA sequence
Length = 607
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 149 gctggtgtacacgaacctcttcgacgcca 177
>gb|CN140635.1|CN140635 OX1_45_D09.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_D09_A002 5', mRNA sequence
Length = 764
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 698 gctggtgtacacgaacctcttcgacgcca 726
>gb|CN148808.1|CN148808 WOUND1_58_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_H10_A002 5', mRNA sequence
Length = 777
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 699 gctggtgtacacgaacctcttcgacgcca 727
>gb|AY047606.1| Sorghum bicolor beta-1,3-glucanase mRNA, partial cds
Length = 939
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 100 gctggtgtacacgaacctgttcgacgcca 128
|||||||||||||||||| ||||||||||
Sbjct: 681 gctggtgtacacgaacctcttcgacgcca 709
>gb|CW160750.1|CW160750 104_567_11150049_116_36418_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150049, DNA
sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.004
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 107 tacacgaacctgttcgacgccacggtagacgcgctggtggccgcgctggagaagg 161
||||| |||||||||||||||| ||| ||||| | || || |||||||||||||
Sbjct: 595 tacaccaacctgttcgacgccatggtggacgccgtcgtcgcggcgctggagaagg 541
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,754
Number of Sequences: 832831
Number of extensions: 172754
Number of successful extensions: 50613
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50506
Number of HSP's gapped (non-prelim): 105
length of query: 577
length of database: 491,359,669
effective HSP length: 19
effective length of query: 558
effective length of database: 475,535,880
effective search space: 265349021040
effective search space used: 265349021040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)