BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF481414.1|BF481414 FM1_18_G10.b1_A003 Floral-Induced Me... 498 e-139
gb|BG559324.1|BG559324 RHIZ2_53_D08.b1_A003 Rhizome2 (RHIZ2... 498 e-139
gb|AW565004.1|AW565004 LG1_313_C02.b1_A002 Light Grown 1 (L... 496 e-138
gb|BE356690.1|BE356690 DG1_12_D03.b1_A002 Dark Grown 1 (DG1... 496 e-138
gb|BE918918.1|BE918918 FM1_1_G10.b1_A003 Floral-Induced Mer... 496 e-138
gb|BF481115.1|BF481115 FM1_16_E10.b1_A003 Floral-Induced Me... 494 e-137
gb|BM325727.1|BM325727 PIC1_52_A08.b1_A002 Pathogen-infecte... 492 e-137
gb|CF487884.1|CF487884 POL1_46_B04.g1_A002 Pollen Sorghum b... 492 e-137
gb|CD428569.1|CD428569 ETH1_27_G10.g1_A002 Ethylene-treated... 488 e-136
gb|BE366334.1|BE366334 PI1_32_E04.g1_A002 Pathogen induced ... 474 e-131
gb|BF481342.1|BF481342 FM1_18_G10.g1_A003 Floral-Induced Me... 474 e-131
gb|BG103734.1|BG103734 RHIZ2_40_B10.g1_A003 Rhizome2 (RHIZ2... 474 e-131
gb|BM330439.1|BM330439 PIC1_52_A08.g1_A002 Pathogen-infecte... 474 e-131
gb|CD428541.1|CD428541 ETH1_27_G10.b1_A002 Ethylene-treated... 474 e-131
gb|BE359652.1|BE359652 DG1_56_D04.b2_A002 Dark Grown 1 (DG1... 450 e-124
gb|BE918723.1|BE918723 FM1_1_G10.g1_A003 Floral-Induced Mer... 450 e-124
gb|CF480761.1|CF480761 POL1_67_E11.g1_A002 Pollen Sorghum b... 450 e-124
gb|CN143233.1|CN143233 WOUND1_14_H10.g1_A002 Wounded leaves... 428 e-118
gb|AW564222.1|AW564222 LG1_289_A08.b1_A002 Light Grown 1 (L... 412 e-113
gb|BG557452.1|BG557452 EM1_44_D02.b1_A002 Embryo 1 (EM1) So... 410 e-112
gb|BG104072.1|BG104072 RHIZ2_40_B10.b1_A003 Rhizome2 (RHIZ2... 389 e-106
gb|CF488084.1|CF488084 POL1_47_E06.g1_A002 Pollen Sorghum b... 383 e-104
gb|CN138814.1|CN138814 OX1_14_D03.b1_A002 Oxidatively-stres... 383 e-104
gb|BE594360.1|BE594360 PI1_32_E04.b2_A002 Pathogen induced ... 377 e-102
gb|BE366313.1|BE366313 PI1_32_E04.b1_A002 Pathogen induced ... 369 e-100
gb|CF487803.1|CF487803 POL1_46_B04.b1_A002 Pollen Sorghum b... 365 7e-099
gb|AW282479.1|AW282479 LG1_313_C02.g1_A002 Light Grown 1 (L... 359 4e-097
gb|BG557234.1|BG557234 EM1_44_D02.g1_A002 Embryo 1 (EM1) So... 331 9e-089
gb|BE356818.1|BE356818 DG1_12_D03.g1_A002 Dark Grown 1 (DG1... 313 2e-083
gb|BG050665.1|BG050665 FM1_71_C03.g1_A003 Floral-Induced Me... 309 3e-082
gb|CF480675.1|CF480675 POL1_67_E11.b1_A002 Pollen Sorghum b... 281 8e-074
gb|BF421881.1|BF421881 FM1_16_E10.g1_A003 Floral-Induced Me... 274 2e-071
gb|CF488001.1|CF488001 POL1_47_E06.b1_A002 Pollen Sorghum b... 250 3e-064
gb|CW308406.1|CW308406 104_796_11468650_116_35731_033 Sorgh... 236 4e-060
gb|CW308407.1|CW308407 104_796_11468650_148_35739_033 Sorgh... 236 4e-060
gb|CF771551.1|CF771551 DSBF1_21_A02.g1_A010 Drought-stresse... 216 4e-054
gb|CW189339.1|CW189339 104_610_11173911_148_37102_056 Sorgh... 194 1e-047
gb|CW210513.1|CW210513 104_641_11189834_116_37009_015 Sorgh... 184 1e-044
gb|CF756863.1|CF756863 DSAF1_10_E05.g1_A011 Drought-stresse... 180 2e-043
gb|CF772897.1|CF772897 DSBF1_40_G02.g1_A010 Drought-stresse... 163 5e-038
gb|CF756864.1|CF756864 DSAF1_10_E06.g1_A011 Drought-stresse... 159 8e-037
gb|CF756950.1|CF756950 DSAF1_11_F12.g1_A011 Drought-stresse... 159 8e-037
gb|CL148067.1|CL148067 104_327_10592830_148_31780_338 Sorgh... 149 8e-034
gb|CW210514.1|CW210514 104_641_11189834_148_37008_015 Sorgh... 147 3e-033
gb|CW221777.1|CW221777 104_657_11202028_148_37450_016 Sorgh... 147 3e-033
gb|CW404199.1|CW404199 fsbb001f096d22f0 Sorghum methylation... 147 3e-033
gb|CW060809.1|CW060809 104_304_10520059_114_30143 Sorghum m... 145 1e-032
gb|CW346300.1|CW346300 104_849_11488951_116_36213_020 Sorgh... 145 1e-032
gb|CW404200.1|CW404200 fsbb001f096d22k0 Sorghum methylation... 131 2e-028
gb|CW134771.1|CW134771 104_519_11117487_148_34824_062 Sorgh... 92 2e-016
gb|CW144640.1|CW144640 104_536_11138049_116_34966_033 Sorgh... 92 2e-016
gb|CW346301.1|CW346301 104_849_11488951_148_36214_020 Sorgh... 92 2e-016
gb|CF480099.1|CF480099 POL1_63_F01.g1_A002 Pollen Sorghum b... 84 4e-014
gb|CF480012.1|CF480012 POL1_63_F01.b1_A002 Pollen Sorghum b... 80 6e-013
gb|CW221776.1|CW221776 104_657_11202028_116_37451_016 Sorgh... 70 6e-010
gb|CW474927.1|CW474927 fsbb001f231a19f0 Sorghum methylation... 70 6e-010
gb|BG103722.1|BG103722 RHIZ2_40_A07.g1_A003 Rhizome2 (RHIZ2... 68 2e-009
gb|BZ334151.1|BZ334151 hx77b09.g1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|CW493955.1|CW493955 fsbb001f284p14f0 Sorghum methylation... 58 2e-006
gb|CW088248.1|CW088248 104_433_10948078_116_32578_093 Sorgh... 42 0.13
gb|CW369723.1|CW369723 fsbb001f044e12k0 Sorghum methylation... 42 0.13
gb|BG559007.1|BG559007 RHIZ2_53_D08.g1_A003 Rhizome2 (RHIZ2... 42 0.13
>gb|BF481414.1|BF481414 FM1_18_G10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 589
Score = 498 bits (251), Expect = e-139
Identities = 436/494 (88%), Gaps = 14/494 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 509 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 456
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 455 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 399
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 398 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 339
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 338 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 279
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 278 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 219
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||||||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 218 ctttgacatacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 159
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 158 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 99
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatgg--aatgggaactagg 1225
|||||||||||||||| ||||||||| || ||| || || || |||||||||||||
Sbjct: 98 gaccccagaactccat---cggcggcggcgctgaagcggcgacggggaatgggaactagg 42
Query: 1226 gtttaagccgccgg 1239
||||||||||||||
Sbjct: 41 gtttaagccgccgg 28
>gb|BG559324.1|BG559324 RHIZ2_53_D08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 514
Score = 498 bits (251), Expect = e-139
Identities = 436/494 (88%), Gaps = 14/494 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 509 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 456
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 455 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 399
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 398 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 339
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 338 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 279
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 278 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 219
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||||||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 218 ctttgacatacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 159
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 158 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 99
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatgg--aatgggaactagg 1225
|||||||||||||||| ||||||||| || ||| || || || |||||||||||||
Sbjct: 98 gaccccagaactccat---cggcggcggcgctgaagcggcgacggggaatgggaactagg 42
Query: 1226 gtttaagccgccgg 1239
||||||||||||||
Sbjct: 41 gtttaagccgccgg 28
>gb|AW565004.1|AW565004 LG1_313_C02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 641
Score = 496 bits (250), Expect = e-138
Identities = 434/492 (88%), Gaps = 10/492 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 506 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 453
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 452 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 396
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 395 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 336
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 335 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 276
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 275 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 216
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 215 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 156
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 155 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 96
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactagggt 1227
|||||||||||||||||| |||||||| | || ||| | |||||||||||||||||
Sbjct: 95 gaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactagggt 37
Query: 1228 ttaagccgccgg 1239
||||||||||||
Sbjct: 36 ttaagccgccgg 25
Score = 56.0 bits (28), Expect = 8e-006
Identities = 42/46 (91%), Gaps = 3/46 (6%)
Strand = Plus / Minus
Query: 610 catcacttgaatcatc---atcgccttcgtcaggagataatccctc 652
|||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 641 catcacttgaatcatcgtcatcgccttcttcaggagataatccctc 596
>gb|BE356690.1|BE356690 DG1_12_D03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 578
Score = 496 bits (250), Expect = e-138
Identities = 434/492 (88%), Gaps = 10/492 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 496 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 443
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 442 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 386
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 385 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 326
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 325 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 266
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 265 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 206
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 205 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 146
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 145 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 86
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactagggt 1227
|||||||||||||||||| |||||||| | || ||| | |||||||||||||||||
Sbjct: 85 gaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactagggt 27
Query: 1228 ttaagccgccgg 1239
||||||||||||
Sbjct: 26 ttaagccgccgg 15
>gb|BE918918.1|BE918918 FM1_1_G10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 582
Score = 496 bits (250), Expect = e-138
Identities = 434/492 (88%), Gaps = 10/492 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 500 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 447
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 446 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 390
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 389 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 330
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 329 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 270
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 269 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 210
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 209 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 150
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 149 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 90
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactagggt 1227
|||||||||||||||||| |||||||| | || ||| | |||||||||||||||||
Sbjct: 89 gaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactagggt 31
Query: 1228 ttaagccgccgg 1239
||||||||||||
Sbjct: 30 ttaagccgccgg 19
>gb|BF481115.1|BF481115 FM1_16_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 547
Score = 494 bits (249), Expect = e-137
Identities = 399/447 (89%), Gaps = 9/447 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 447 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 394
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 393 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 337
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 336 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 277
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 276 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 217
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 216 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 157
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||||||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 156 ctttgacatacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 97
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 96 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 37
Query: 1168 gaccccagaactccatcgacggcggcg 1194
|||||||||||||||||| ||||||||
Sbjct: 36 gaccccagaactccatcggcggcggcg 10
>gb|BM325727.1|BM325727 PIC1_52_A08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 565
Score = 492 bits (248), Expect = e-137
Identities = 432/490 (88%), Gaps = 10/490 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 487 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 434
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 433 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 377
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 376 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 317
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 316 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 257
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 256 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 197
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 196 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 137
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 136 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 77
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactagggt 1227
|||||||||||||||||| |||||||| | || ||| | |||||||||||||||||
Sbjct: 76 gaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactagggt 18
Query: 1228 ttaagccgcc 1237
||||||||||
Sbjct: 17 ttaagccgcc 8
>gb|CF487884.1|CF487884 POL1_46_B04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_B04_A002 5', mRNA sequence
Length = 663
Score = 492 bits (248), Expect = e-137
Identities = 436/496 (87%), Gaps = 7/496 (1%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| || | ||||||||||||||| ||||||||| |||||
Sbjct: 501 caagacttgattttgaagctgcagaa---actgccttctcttgacttttctgcttctcct 445
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttc---at 864
|||| ||| |||| || ||||||||||| || |||| ||| ||||||||||| || ||
Sbjct: 444 tcccttcagcttttccgttttccttgataacaggaacgttcagctcctcctcctcctcat 385
Query: 865 cctcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagaga 924
| |||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||
Sbjct: 384 cttcagaatcaagatccatttcatcttcctcggttggctgctcaaccttgtaacctgtga 325
Query: 925 aaaatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaat 984
||| |||||||||||||| |||||||| |||||||| |||||||||| |||||||||||
Sbjct: 324 gaaagacactggtagtttttgatgtgtgcgacagctcgaactctttatcgaaaaccaaat 265
Query: 985 cgaattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcat 1044
| | |||||||| |||| ||||| |||||||| || |||||||||||||||| ||||
Sbjct: 264 cacactgtatctgagggttcttgtcaatagagagggtgccaatggcaagcttctcatcat 205
Query: 1045 caactttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctggg 1104
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 caactttgacatacatcaagacactgtcacttttctttgattccccaagagcagcctggg 145
Query: 1105 aaacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacct 1164
||| ||||| ||||||||||||||||||||| || || |||||| |||||| || ||||
Sbjct: 144 aaaggtgcaagataaagccatgtccaggctctcatttaacagtgcttccaggcttaacct 85
Query: 1165 cgagaccccagaactccatcgacggcggcggagcggaaacgaagatg-gaatgggaacta 1223
||||||||||||||||||||| ||||||||||| ||| ||| |||| ||||||||||||
Sbjct: 84 cgagaccccagaactccatcggcggcggcggagttgaagcgacgatgagaatgggaacta 25
Query: 1224 gggtttaagccgccgg 1239
||||||||||||||||
Sbjct: 24 gggtttaagccgccgg 9
Score = 85.7 bits (43), Expect = 9e-015
Identities = 57/61 (93%), Gaps = 3/61 (4%)
Strand = Plus / Minus
Query: 595 cactggtatcatcctcatcacttgaatcatca---tcgccttcgtcaggagataatccct 651
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 663 cactggtatcatcctcatcacttgaatcatcatcgtcgccttcttcaggagataatccct 604
Query: 652 c 652
|
Sbjct: 603 c 603
>gb|CD428569.1|CD428569 ETH1_27_G10.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_G10_A002 5', mRNA sequence
Length = 659
Score = 488 bits (246), Expect = e-136
Identities = 433/492 (88%), Gaps = 10/492 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 515 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 462
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 461 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 405
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 404 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 345
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| || |||||||||||
Sbjct: 344 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgagaaccaaatcga 285
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 284 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 225
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 224 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 165
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 164 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 105
Query: 1168 gaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactagggt 1227
|||||||||||||||||| |||||||| | || ||| | |||||||||||||||||
Sbjct: 104 gaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactagggt 46
Query: 1228 ttaagccgccgg 1239
||||||||||||
Sbjct: 45 ttaagccgccgg 34
Score = 73.8 bits (37), Expect = 4e-011
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Minus
Query: 601 tatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataatccctc 652
||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 659 tatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataatccctc 605
>gb|BE366334.1|BE366334 PI1_32_E04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 700
Score = 474 bits (239), Expect = e-131
Identities = 380/425 (89%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 497 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 438
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 437 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 378
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 377 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 318
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 317 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 258
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 257 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 201
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 200 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 141
Query: 591 tcatcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataat 647
|| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 140 tcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataat 81
Query: 648 ccctc 652
|||||
Sbjct: 80 ccctc 76
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 578 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 519
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 518 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 459
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 458 cacttgg-caccatgcttcgccttc 435
>gb|BF481342.1|BF481342 FM1_18_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 563
Score = 474 bits (239), Expect = e-131
Identities = 380/425 (89%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| | |||||| ||||| |||| |||| ||||| ||||||||||||
Sbjct: 495 ccatgcttcgccttcgtagactcaattggagctgcggctcacttggcaccatgcttcgcc 436
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 435 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 376
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 375 accgagccaccagattttggagacttctcctttgatttgtcattgtttgcaggggtcttg 316
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 315 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 256
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 255 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 199
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 198 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 139
Query: 591 tcatcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataat 647
|| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 138 tcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataat 79
Query: 648 ccctc 652
|||||
Sbjct: 78 ccctc 74
Score = 65.9 bits (33), Expect = 9e-009
Identities = 108/129 (83%), Gaps = 3/129 (2%)
Strand = Plus / Minus
Query: 122 tctctaaacaaaataaggacagcc-tactaacatcgacaatctttcca-gactcgcttgg 179
||||||||||||| |||| ||||| |||| || ||||| | |||||| ||||| ||||
Sbjct: 560 tctctaaacaaaacaaggccagccctacttccaccgacattttttccaagactcacttga 501
Query: 180 atctcccatgcttcaccttcatggactcgaatggacctgcgactcacttggccaccatgc 239
| |||||||||||| ||||| | ||||| | |||| ||||| ||||||||| ||||||||
Sbjct: 500 acctcccatgcttcgccttcgtagactcaattggagctgcggctcacttgg-caccatgc 442
Query: 240 ttctccttc 248
||| |||||
Sbjct: 441 ttcgccttc 433
>gb|BG103734.1|BG103734 RHIZ2_40_B10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 720
Score = 474 bits (239), Expect = e-131
Identities = 380/425 (89%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| | |||||| ||||| |||| |||| ||||| ||||||||||||
Sbjct: 503 ccatgcttcgccttcgtagactcaattggagctgcggctcacttggcaccatgcttcgcc 444
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 443 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 384
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 accgagccaccagattttggagacttctcctttgatttgtcattgtttgcaggggtcttg 324
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 323 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 264
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 263 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 207
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 206 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 147
Query: 591 tcatcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataat 647
|| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 146 tcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataat 87
Query: 648 ccctc 652
|||||
Sbjct: 86 ccctc 82
Score = 75.8 bits (38), Expect = 9e-012
Identities = 122/146 (83%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggacag-cctactaacatcgacaatct 163
||||||||||| || ||||||||||||||| |||| ||| |||||| || ||||| | |
Sbjct: 585 aatcacatagctactagtctctaaacaaaacaaggccagccctacttccaccgacatttt 526
Query: 164 ttcc-agactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgac 222
|||| ||||| |||| | |||||||||||| ||||| | ||||| | |||| ||||| |
Sbjct: 525 ttccaagactaacttgaacctcccatgcttcgccttcgtagactcaattggagctgcggc 466
Query: 223 tcacttggccaccatgcttctccttc 248
|||||||| ||||||||||| |||||
Sbjct: 465 tcacttgg-caccatgcttcgccttc 441
>gb|BM330439.1|BM330439 PIC1_52_A08.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 627
Score = 474 bits (239), Expect = e-131
Identities = 380/425 (89%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 454 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 395
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 394 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 335
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 334 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 275
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 274 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 215
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 214 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 158
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 157 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 98
Query: 591 tcatcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataat 647
|| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 97 tcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataat 38
Query: 648 ccctc 652
|||||
Sbjct: 37 ccctc 33
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 535 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 476
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 475 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 416
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 415 cacttgg-caccatgcttcgccttc 392
>gb|CD428541.1|CD428541 ETH1_27_G10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_27_G10_A002 3', mRNA sequence
Length = 802
Score = 474 bits (239), Expect = e-131
Identities = 380/425 (89%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 587 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 528
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 527 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 468
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 467 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 408
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 407 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 348
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 347 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 291
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 290 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 231
Query: 591 tcatcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataat 647
|| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 230 tcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataat 171
Query: 648 ccctc 652
|||||
Sbjct: 170 ccctc 166
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 668 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 609
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 608 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 549
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 548 cacttgg-caccatgcttcgccttc 525
Score = 75.8 bits (38), Expect = 9e-012
Identities = 72/82 (87%), Gaps = 6/82 (7%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||
Sbjct: 76 caagacttgattttgaagctgcggca---actgccttctcttgacttttctg---ctcct 23
Query: 808 tcccatcacctttgccattttc 829
|||||||| |||||||||||||
Sbjct: 22 tcccatcagctttgccattttc 1
>gb|BE359652.1|BE359652 DG1_56_D04.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 531
Score = 450 bits (227), Expect = e-124
Identities = 377/425 (88%), Gaps = 9/425 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 422 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 369
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 368 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 312
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 311 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 252
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 251 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 192
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 191 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 132
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 131 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 72
Query: 1108 cgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcga 1167
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct: 71 ggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctcaa 12
Query: 1168 gaccc 1172
|||||
Sbjct: 11 gaccc 7
>gb|BE918723.1|BE918723 FM1_1_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 600
Score = 450 bits (227), Expect = e-124
Identities = 354/395 (89%), Gaps = 6/395 (1%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 404 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 345
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 344 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 285
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 284 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 225
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 224 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 165
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||||||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 164 gctgacggtgtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 108
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 107 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 48
Query: 591 tcatcactggtatcatcctcatcacttgaatcatc 625
|| ||||| ||||||||||||||||||||||||||
Sbjct: 47 tcgtcacttgtatcatcctcatcacttgaatcatc 13
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 485 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 426
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 425 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 366
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 365 cacttgg-caccatgcttcgccttc 342
>gb|CF480761.1|CF480761 POL1_67_E11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E11_A002 5', mRNA sequence
Length = 708
Score = 450 bits (227), Expect = e-124
Identities = 397/452 (87%), Gaps = 5/452 (1%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| || | ||||||||||||||| ||||||||| |||||
Sbjct: 457 caagacttgattttgaagctgcagaa---actgccttctcttgacttttctgcttctcct 401
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||| ||| |||| || ||||||||||| || |||| ||| ||||||||||| || || |
Sbjct: 400 tcccttcagcttttccgttttccttgataacaggaacgttcagctcctcctcctcctcat 341
Query: 868 --cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaa 925
||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||
Sbjct: 340 ttcagaatcaagatccatttcatcttcctcggttggctgctcaaccttgtaacctgtgag 281
Query: 926 aaatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatc 985
||| |||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 280 aaagacactggtagtttttgatgtgtgcgacagctcgaactctttatcgaaaaccaaatc 221
Query: 986 gaattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatc 1045
| |||||||| |||| ||||| |||||||| || |||||||||||||||| |||||
Sbjct: 220 acactgtatctgagggttcttgtcaatagagagggtgccaatggcaagcttctcatcatc 161
Query: 1046 aactttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctggga 1105
||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 aactttgacatacatcaagacactgtcacttttctttgattccccaagagcagcctggga 101
Query: 1106 aacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctc 1165
|| ||||| |||||||||||||||||||||||| || |||||| |||||| || |||||
Sbjct: 100 aaggtgcaagataaagccatgtccaggctcacatttaacagtgcttccaggcttaacctc 41
Query: 1166 gagaccccagaactccatcgacggcggcggag 1197
||||||||||||||| |||| |||||||||||
Sbjct: 40 gagaccccagaactcaatcggcggcggcggag 9
Score = 161 bits (81), Expect = 2e-037
Identities = 136/153 (88%), Gaps = 6/153 (3%)
Strand = Plus / Minus
Query: 503 atcagaaagaggcgttttcagagcattttcagcacctctcttcttgcctgcctctggctt 562
||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 708 atcagaaagcagagttttcagagcattttcagcagctctcttcttgcctgcctctggctt 649
Query: 563 tttaggagttggggtttcttcctcgtcatcatcactggtatcatcctcatcacttgaatc 622
||||| ||||| || |||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 648 cttaggtgttggcgt---ttcctcctcaccctcactggtatcatcctcatcacttgaatc 592
Query: 623 atca---tcgccttcgtcaggagataatccctc 652
|||| |||||||| |||||||||||||||||
Sbjct: 591 atcatcgtcgccttcttcaggagataatccctc 559
>gb|CN143233.1|CN143233 WOUND1_14_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_14_H10_A002 5', mRNA sequence
Length = 460
Score = 428 bits (216), Expect = e-118
Identities = 385/438 (87%), Gaps = 5/438 (1%)
Strand = Plus / Minus
Query: 803 ctccttcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttc 862
||||||||||||| |||||||||||||||||||||| |||| || || |||||| ||
Sbjct: 449 ctccttcccatcagctttgccattttccttgattacaggaacgtccag---ctcctcgtc 393
Query: 863 atcctcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccaga 922
||| |||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||
Sbjct: 392 atcttcagaatcaagatccatttcgtcttcctccattggatgctcaaccttgtaaccaga 333
Query: 923 gaaaaatacactggtagttttcgatgtgtgtgacagctcaaactctttat-tgaaaacca 981
||| || |||||||||||||| |||||||| ||||||||||||||||||| ||||||||
Sbjct: 332 gaagaacacactggtagtttttgatgtgtgcgacagctcaaactctttatgcgaaaacca 273
Query: 982 aatcgaattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgt 1041
|||||||||||| || || | ||||| |||||||| ||||||||||||||||||| |
Sbjct: 272 aatcgaattgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgat 213
Query: 1042 catcaactttgacatacattaaggcactgtcacttttctttgattccccaagggcagcct 1101
|| |||||||| ||||| |||||| |||||||||||||||||||||| || |||||||
Sbjct: 212 tgtcgactttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcct 153
Query: 1102 gggaaacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttga 1161
| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 152 gcgaaaggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttga 93
Query: 1162 cctcgagaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaac 1221
|||| ||||||||||||||||||| |||||||| | || ||| | |||||||||||
Sbjct: 92 cctcaagaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaac 34
Query: 1222 tagggtttaagccgccgg 1239
||||||||||||||||||
Sbjct: 33 tagggtttaagccgccgg 16
>gb|AW564222.1|AW564222 LG1_289_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 412 bits (208), Expect = e-113
Identities = 349/394 (88%), Gaps = 9/394 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 396 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 343
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 342 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 286
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 285 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 226
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 225 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 166
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 165 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 106
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 105 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 46
Query: 1108 cgtgcaggataaagccatgtccaggctcacactt 1141
|||||||||||||||||||||||||||||||||
Sbjct: 45 ggtgcaggataaagccatgtccaggctcacactt 12
Score = 79.8 bits (40), Expect = 6e-013
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 594 tcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataatccc 650
||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 547 tcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataatccc 488
Query: 651 tc 652
||
Sbjct: 487 tc 486
>gb|BG557452.1|BG557452 EM1_44_D02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 381
Score = 410 bits (207), Expect = e-112
Identities = 331/371 (89%), Gaps = 1/371 (0%)
Strand = Plus / Minus
Query: 867 tcagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaa 926
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct: 377 tcagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaag 318
Query: 927 aatacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcg 986
|| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 317 aacacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcg 258
Query: 987 aattgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatca 1046
||||||| || || | ||||| |||||||| ||||||||||||||||||| || ||
Sbjct: 257 aattgtagttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcg 198
Query: 1047 actttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaa 1106
|||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| |||
Sbjct: 197 actttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaa 138
Query: 1107 acgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtttgacctcg 1166
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 137 aggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggcttgacctca 78
Query: 1167 agaccccagaactccatcgacggcggcggagcggaaacgaagatggaatgggaactaggg 1226
||||||||||||||||||| |||||||| | || ||| | ||||||||||||||||
Sbjct: 77 agaccccagaactccatcggcggcggcgctgaggcggcgacg-gggaatgggaactaggg 19
Query: 1227 tttaagccgcc 1237
|||||||||||
Sbjct: 18 tttaagccgcc 8
>gb|BG104072.1|BG104072 RHIZ2_40_B10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 484
Score = 389 bits (196), Expect = e-106
Identities = 292/322 (90%), Gaps = 9/322 (2%)
Strand = Plus / Minus
Query: 337 tgcatgatttgcaagggactgacccaccagattttggagacttctccgttgatttgtcat 396
|||| |||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct: 483 tgcaagatttgcaagggaccgagccaccagattttggagacttctcctttgatttgtcat 424
Query: 397 tgtttgcaggggtcttgccttttgctgggtgtggagttgccacatgggtggcacccttct 456
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 423 tgtttgcaggggtcttgccttttgctgggtgtggagttgccacatggacggcgcccttct 364
Query: 457 tgccacctgttttctgggctggcggtgtggcaacctttgctttcttatcagaaagaggcg 516
|||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
Sbjct: 363 tgccacctgtcttctgggctgacggtgtggcaaccttagctttcttatcagaaagaggag 304
Query: 517 ttttcagagcattttcagcacctctcttcttgcctgcctctgg---ctttttaggagttg 573
|||| | |||||||||| ||||||||||||||||||||| ||| ||||||||||
Sbjct: 303 ---tcagggaattttcagcaggtctcttcttgcctgcctctggcttcttcttaggagttg 247
Query: 574 gggtttcttcctcgtcatcatcactggtatcatcctcatcacttgaatca---tcatcgc 630
| ||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct: 246 gagtttcttcctcctcatcgtcacttgtatcatcctcatcacttgaatcatcgtcatcgc 187
Query: 631 cttcgtcaggagataatccctc 652
|||| |||||||||||||||||
Sbjct: 186 cttcttcaggagataatccctc 165
Score = 63.9 bits (32), Expect = 3e-008
Identities = 66/76 (86%), Gaps = 6/76 (7%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||||
Sbjct: 76 caagacttgattttgaagctgcggca---actgccttctcttgacttttctg---ctcct 23
Query: 808 tcccatcacctttgcc 823
|||||||| |||||||
Sbjct: 22 tcccatcagctttgcc 7
>gb|CF488084.1|CF488084 POL1_47_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_E06_A002 5', mRNA sequence
Length = 650
Score = 383 bits (193), Expect = e-104
Identities = 317/357 (88%), Gaps = 1/357 (0%)
Strand = Plus / Minus
Query: 884 ttcatctccctcaattggctgctcaaccttgtaaccagagaaaaatacactggtagtttt 943
||||||| |||| |||||||||||||||||||||| | || ||| ||||||||||||||
Sbjct: 373 ttcatcttcctcggttggctgctcaaccttgtaacctgtgagaaagacactggtagtttt 314
Query: 944 cgatgtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggta 1003
|||||||| |||||||| |||||||||| |||||||||||| | |||||||| ||||
Sbjct: 313 tgatgtgtgcgacagctcgaactctttatcgaaaaccaaatcacactgtatctgagggtt 254
Query: 1004 tttgtcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaa 1063
||||| |||||||| || |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 253 cttgtcaatagagagggtgccaatggcaagcttctcatcatcaactttgacatacatcaa 194
Query: 1064 ggcactgtcacttttctttgattccccaagggcagcctgggaaacgtgcaggataaagcc 1123
| |||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||
Sbjct: 193 gacactgtcacttttctttgattccccaagagcaggctgggaaaggtgcaagataaagcc 134
Query: 1124 atgtccaggctcacacttgacagtggatccaggtttgacctcgagaccccagaactccat 1183
||||||||||||||| || |||||| |||||| || |||||||||||||||||||||||
Sbjct: 133 atgtccaggctcacatttaacagtgcttccaggcttaacctcgagaccccagaactccat 74
Query: 1184 cgacggcggcggagcggaaacgaagatg-gaatgggaactagggtttaagccgccgg 1239
|| ||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||
Sbjct: 73 cggcggcggcggagttgaagcgacgatgagaatgggaactagggtttaagccgccgg 17
Score = 115 bits (58), Expect = 1e-023
Identities = 121/141 (85%), Gaps = 7/141 (4%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| || | ||||||||||||||| ||||||||| |||||
Sbjct: 631 caagacttgattttgaagctgcagaa---actgccttctcttgacttttctgcttctcct 575
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcct----cttca 863
|||| ||| |||| || ||||||||||| || |||| ||| |||||||||| |||||
Sbjct: 574 tcccttcagcttttccgttttccttgataacaggaacgttcagctcctcctcctccttca 515
Query: 864 tcctcagaatcaagatccatt 884
|| ||||||||||||||||||
Sbjct: 514 tcttcagaatcaagatccatt 494
>gb|CN138814.1|CN138814 OX1_14_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_14_D03_A002 3', mRNA sequence
Length = 579
Score = 383 bits (193), Expect = e-104
Identities = 320/361 (88%), Gaps = 6/361 (1%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 358 ccatgcttcgccttccaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 299
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 298 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 239
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 238 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 179
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||||
Sbjct: 178 ccttttgctgggtgtggagttgccacttggacggcgcccttcttgccacctgtcttctgg 119
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttca 533
|||| ||| ||||||||||| |||||||||||||||||||| | |||| | |||||||
Sbjct: 118 gctgacggggtggcaaccttagctttcttatcagaaagaggag---tcagggaattttca 62
Query: 534 gcacctctcttcttgcctgcctctgg---ctttttaggagttggggtttcttcctcgtca 590
||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||| |||
Sbjct: 61 gcaggtctcttcttgcctgcctctggcttcttcttaggagttggagtttcttcctcctca 2
Query: 591 t 591
|
Sbjct: 1 t 1
Score = 81.8 bits (41), Expect = 1e-013
Identities = 121/145 (83%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 439 aatcacatagccactagtctctaaacaaaaaaagggcaggcctacttccaccgacatttt 380
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
||||| |||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 379 ttccaaactcacttaaacctcccatgcttcgccttccaagactcagttgtacctgcgact 320
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 319 cacttgg-caccatgcttcgccttc 296
>gb|BE594360.1|BE594360 PI1_32_E04.b2_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 528
Score = 377 bits (190), Expect = e-102
Identities = 331/376 (88%), Gaps = 9/376 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 374 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 321
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 320 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 264
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 263 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 204
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 203 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcga 144
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 143 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 84
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 83 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 24
Query: 1108 cgtgcaggataaagcc 1123
|||||||||||||||
Sbjct: 23 ggtgcaggataaagcc 8
Score = 79.8 bits (40), Expect = 6e-013
Identities = 57/62 (91%), Gaps = 3/62 (4%)
Strand = Plus / Minus
Query: 594 tcactggtatcatcctcatcacttgaatca---tcatcgccttcgtcaggagataatccc 650
||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 525 tcacttgtatcatcctcatcacttgaatcatcgtcatcgccttcttcaggagataatccc 466
Query: 651 tc 652
||
Sbjct: 465 tc 464
>gb|BE366313.1|BE366313 PI1_32_E04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 461
Score = 369 bits (186), Expect = e-100
Identities = 330/376 (87%), Gaps = 9/376 (2%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 374 caagacttgattttgaagctgcggca---actgccttctcttgacttttctgctcct--- 321
Query: 808 tcccatcacctttgccattttccttgattactggaatgtttagctcctcctcttcatcct 867
|||||||| |||||||||||||||||||||| |||| || ||||||||||| ||| |
Sbjct: 320 tcccatcagctttgccattttccttgattacaggaacgtccagctcctcctc---atctt 264
Query: 868 cagaatcaagatccatttcatctccctcaattggctgctcaaccttgtaaccagagaaaa 927
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
Sbjct: 263 cagaatcaagatccatttcgtcttcctccattggctgctcaaccttgtaaccagagaaga 204
Query: 928 atacactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcga 987
| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
Sbjct: 203 acacactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcca 144
Query: 988 attgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaa 1047
|||||| || || | ||||| |||||||| ||||||||||||||||||| || || |
Sbjct: 143 attgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcga 84
Query: 1048 ctttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctgggaaa 1107
||||||| ||||| |||||| |||||||||||||||||||||| || |||||||| ||||
Sbjct: 83 ctttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctgcgaaa 24
Query: 1108 cgtgcaggataaagcc 1123
|||||||||||||||
Sbjct: 23 ggtgcaggataaagcc 8
>gb|CF487803.1|CF487803 POL1_46_B04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_46_B04_A002 3', mRNA sequence
Length = 549
Score = 365 bits (184), Expect = 7e-099
Identities = 329/377 (87%), Gaps = 9/377 (2%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 387 ttggacctgggactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 328
Query: 319 cactattgaatgtcttgctgcatgatttgcaagggactgacccaccagattttggagact 378
|||| ||||| ||||||||||| |||||||||||||| |||| ||||||| ||||||||
Sbjct: 327 cactgttgaacgtcttgctgcacgatttgcaagggaccgaccgaccagatcttggagacc 268
Query: 379 tctccgttgatttgtcattgtttgcaggggtcttgcct------tttgctgggtgtggag 432
||||| |||| |||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 267 tctcctttgacttgtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggag 208
Query: 433 ttgccacatgggtggcacccttcttgccacctgttttctgggctggcggtgtggcaacct 492
|||||||||||| || ||||||||||||||||| ||||||| || ||| | ||||||||
Sbjct: 207 ttgccacatggggggggcccttcttgccacctgtcttctggggtgacgggggggcaacct 148
Query: 493 ttgctttcttatcagaaagaggcgttttcagagcattttcagcacctctcttcttgcctg 552
|| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct: 147 ttactttcttatcagaaagcagagttttcagagcattttcagcagctctcttcttgcctg 88
Query: 553 cctctggctttttaggagttggggtttcttcctcgtcatcatcactggtatcatcctcat 612
||||||| || ||||| | ||| || |||||| ||| | ||||||| |||||||||||
Sbjct: 87 cctctgggttcttagggggtggcgt---ttcctcctcaccctcactgggatcatcctcat 31
Query: 613 cacttgaatcatcatcg 629
|||||||||||||||||
Sbjct: 30 cacttgaatcatcatcg 14
>gb|AW282479.1|AW282479 LG1_313_C02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 359 bits (181), Expect = 4e-097
Identities = 256/281 (91%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 306 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 247
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 246 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 187
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 186 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 127
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 126 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 67
Query: 474 gctggcggtgtggcaacctttgctttcttatcagaaagagg 514
|||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 66 gctgacggtgtggcaaccttagctttcttatcagaaagagg 26
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 387 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 328
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 327 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 268
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 267 cacttgg-caccatgcttcgccttc 244
>gb|BG557234.1|BG557234 EM1_44_D02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 465
Score = 331 bits (167), Expect = 9e-089
Identities = 242/267 (90%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 267 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 208
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 207 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 148
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 147 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 88
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 87 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 28
Query: 474 gctggcggtgtggcaacctttgctttc 500
|||| ||||||||||||||| ||||||
Sbjct: 27 gctgacggtgtggcaaccttagctttc 1
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 348 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 289
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 288 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 229
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 228 cacttgg-caccatgcttcgccttc 205
>gb|BE356818.1|BE356818 DG1_12_D03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 337
Score = 313 bits (158), Expect = 2e-083
Identities = 261/292 (89%), Gaps = 10/292 (3%)
Strand = Plus / Minus
Query: 367 attttggagacttctccgttgatttgtcattgtttgcaggggtcttgccttttgctgggt 426
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 attttggagacttctcctttgatta-tcattgtttgcaggggtcttgccttttgctgggt 279
Query: 427 gtggagttgccacatgggtggcacccttcttgccacctgttttctgggctggcggtgtgg 486
||||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 278 gtggagttgccacatggacggcgcccttcttgccacctgtcttctgggctgacggtgtgg 219
Query: 487 caacctttgctttcttatcagaaagaggcgttttcagagcattttcagcacctctcttct 546
||||||| |||||||||||||||||||| | |||| | |||||||||| ||||||||
Sbjct: 218 caaccttagctttcttatcagaaagaggag---tcagggaattttcagcaggtctcttct 162
Query: 547 tgcctgcctctgg---ctttttaggagttggggtttcttcctcgtcatcatcactggtat 603
||||||||||||| ||| ||| ||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 161 tgcctgcctctggcttcttcttaagagttggagtttcttcctcctcatcgtcacttgtat 102
Query: 604 catcctcatcacttgaatca---tcatcgccttcgtcaggagataatccctc 652
|||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 101 catcctcatcacttgaatcatcgtcatcgccttcttcaagagataatccctc 50
>gb|BG050665.1|BG050665 FM1_71_C03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 407
Score = 309 bits (156), Expect = 3e-082
Identities = 231/256 (90%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| | |||||| ||||| |||| |||| ||||| ||||||||||||
Sbjct: 256 ccatgcttcgccttcgtagactcaattggagctgcggctcacttggcaccatgcttcgcc 197
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 196 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 137
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136 accgagccaccagattttggagacttctcctttgatttgtcattgtttgcaggggtcttg 77
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgg 473
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 76 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgccacctgtcttctgg 17
Query: 474 gctggcggtgtggcaa 489
|||| ||| |||||||
Sbjct: 16 gctgacggggtggcaa 1
Score = 83.8 bits (42), Expect = 4e-014
Identities = 123/146 (84%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggacag-cctactaacatcgacaatct 163
||||||||||| || ||||||||||||||| |||| ||| |||||| || ||||| | |
Sbjct: 338 aatcacatagctactagtctctaaacaaaacaaggccagccctacttgcaccgacatttt 279
Query: 164 ttcc-agactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgac 222
|||| |||||| |||| | |||||||||||| ||||| | ||||| | |||| ||||| |
Sbjct: 278 ttccaagactcacttgaacctcccatgcttcgccttcgtagactcaattggagctgcggc 219
Query: 223 tcacttggccaccatgcttctccttc 248
|||||||| ||||||||||| |||||
Sbjct: 218 tcacttgg-caccatgcttcgccttc 194
>gb|CF480675.1|CF480675 POL1_67_E11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_67_E11_A002 3', mRNA sequence
Length = 724
Score = 281 bits (142), Expect = 8e-074
Identities = 212/234 (90%), Gaps = 6/234 (2%)
Strand = Plus / Minus
Query: 422 tgggtgtggagttgccacatgggtggcacccttcttgccacctgttttctgggctggcgg 481
||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct: 415 tgggtatggagttgccacatgggtggcgcccttcttgccacctgtcttctgggctgacgg 356
Query: 482 tgtggcaacctttgctttcttatcagaaagaggcgttttcagagcattttcagcacctct 541
||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 355 tgtggcaacctttactttcttatcagaaagcagagttttcagagcattttcagcagctct 296
Query: 542 cttcttgcctgcctctggctttttaggagttggggtttcttcctcgtcatcatcactggt 601
||||||||||||||||||||| ||||| ||||| || |||||| ||| | ||||||||
Sbjct: 295 cttcttgcctgcctctggcttcttaggtgttggcgt---ttcctcctcaccctcactggt 239
Query: 602 atcatcctcatcacttgaatcatca---tcgccttcgtcaggagataatccctc 652
||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 238 atcatcctcatcacttgaatcatcatcgtcgccttcttcaggagataatccctc 185
Score = 200 bits (101), Expect = 2e-049
Identities = 143/157 (91%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 585 ttggacctgtgactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 526
Query: 319 cactattgaatgtcttgctgcatgatttgcaagggactgacccaccagattttggagact 378
|||| ||||| ||||||||||| |||||||||||||| |||| ||||||| ||||||||
Sbjct: 525 cactgttgaacgtcttgctgcacgatttgcaagggaccgaccgaccagatcttggagacc 466
Query: 379 tctccgttgatttgtcattgtttgcaggggtcttgcc 415
||||| |||| ||||||||||||||||||||||||||
Sbjct: 465 tctcctttgacttgtcattgtttgcaggggtcttgcc 429
Score = 79.8 bits (40), Expect = 6e-013
Identities = 75/86 (87%), Gaps = 3/86 (3%)
Strand = Plus / Minus
Query: 748 caagacttgattttgaagctgtagcagctactgccttctcttgatttttctgctcctcct 807
||||||||||||||||||||| || | ||||||||||||||| ||||||||| |||||
Sbjct: 83 caagacttgattttgaagctgcagaa---actgccttctcttgacttttctgcttctcct 27
Query: 808 tcccatcacctttgccattttccttg 833
|||| ||| |||| || |||||||||
Sbjct: 26 tcccttcagcttttccgttttccttg 1
>gb|BF421881.1|BF421881 FM1_16_E10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 414
Score = 274 bits (138), Expect = 2e-071
Identities = 204/226 (90%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| | |||||| ||||| |||| |||| ||||| ||||||||||||
Sbjct: 226 ccatgcttcgccttcgtagactcaattggagctgcggctcacttggcaccatgcttcgcc 167
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 166 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 107
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 106 accgagccaccagattttggagacttctcctttgatttgtcattgtttgcaggggtcttg 47
Query: 414 ccttttgctgggtgtggagttgccacatgggtggcacccttcttgc 459
|||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 46 ccttttgctgggtgtggagttgccacatggacggcgcccttcttgc 1
Score = 75.8 bits (38), Expect = 9e-012
Identities = 122/146 (83%), Gaps = 3/146 (2%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggacag-cctactaacatcgacaatct 163
||||||||||| || ||||||||||||||| |||| ||| |||||| || ||||| | |
Sbjct: 308 aatcacatagctactagtctctaaacaaaacaaggccagccctacttccaccgacatttt 249
Query: 164 ttcc-agactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgac 222
|||| ||||| |||| | |||||||||||| ||||| | ||||| | |||| ||||| |
Sbjct: 248 ttccaagactgacttgaacctcccatgcttcgccttcgtagactcaattggagctgcggc 189
Query: 223 tcacttggccaccatgcttctccttc 248
|||||||| ||||||||||| |||||
Sbjct: 188 tcacttgg-caccatgcttcgccttc 164
>gb|CF488001.1|CF488001 POL1_47_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_47_E06_A002 3', mRNA sequence
Length = 390
Score = 250 bits (126), Expect = 3e-064
Identities = 221/253 (87%), Gaps = 6/253 (2%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| ||||||| |||| ||||||||||||| | ||||||
Sbjct: 253 ttggacctgtgactcacttggcccgatgcttcccctttgagtgagcctgcaaaaccatct 194
Query: 319 cactattgaatgtcttgctgcatgatttgcaagggactgacccaccagattttggagact 378
|||| ||||| ||||||||||| |||||||||||||| |||| |||| || ||||||||
Sbjct: 193 cactgttgaacgtcttgctgcacgatttgcaagggaccgaccgaccaaatcttggagacc 134
Query: 379 tctccgttgatttgtcattgtttgcaggggtcttg------ccttttgctgggtgtggag 432
||||| |||| |||||||||||||||||||||||| || || ||||||| |||||
Sbjct: 133 tctcctttgacttgtcattgtttgcaggggtcttgcccccccccttggctgggtatggag 74
Query: 433 ttgccacatgggtggcacccttcttgccacctgttttctgggctggcggtgtggcaacct 492
|||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 73 ttgccacatgggtggcgcccttcttgccacctgtcttctgggctgacggggtggcaacct 14
Query: 493 ttgctttcttatc 505
|| ||||||||||
Sbjct: 13 ttactttcttatc 1
>gb|CW308406.1|CW308406 104_796_11468650_116_35731_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468650, DNA
sequence
Length = 711
Score = 236 bits (119), Expect = 4e-060
Identities = 194/219 (88%)
Strand = Plus / Plus
Query: 884 ttcatctccctcaattggctgctcaaccttgtaaccagagaaaaatacactggtagtttt 943
||||||| |||| |||||||||||||||||||||| | || ||| ||||||||||||||
Sbjct: 347 ttcatcttcctcggttggctgctcaaccttgtaacctgtgagaaagacactggtagtttt 406
Query: 944 cgatgtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggta 1003
|||||||| |||||||| |||||||||| |||||||||||| | |||||||| ||||
Sbjct: 407 tgatgtgtgcgacagctcgaactctttatcgaaaaccaaatcacactgtatctgagggtt 466
Query: 1004 tttgtcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaa 1063
||||| |||||||| || |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 467 cttgtcaatagagagggtgccaatggcaagcttctcatcatcaactttgacatacatcaa 526
Query: 1064 ggcactgtcacttttctttgattccccaagggcagcctg 1102
| |||||||||||||||||||||||||||| ||||||||
Sbjct: 527 gacactgtcacttttctttgattccccaagagcagcctg 565
Score = 52.0 bits (26), Expect = 1e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 851 ctcctcctcttcatcctcagaatcaagatccatt 884
||||||||| ||||| ||||||||||||||||||
Sbjct: 193 ctcctcctcctcatcttcagaatcaagatccatt 226
Score = 50.1 bits (25), Expect = 5e-004
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 1099 cctgggaaacgtgcaggataaagccatgtccaggctc 1135
||||||||| ||||| |||||||||||||||||||||
Sbjct: 676 cctgggaaa-gtgcaagataaagccatgtccaggctc 711
>gb|CW308407.1|CW308407 104_796_11468650_148_35739_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468650, DNA
sequence
Length = 714
Score = 236 bits (119), Expect = 4e-060
Identities = 194/219 (88%)
Strand = Plus / Minus
Query: 884 ttcatctccctcaattggctgctcaaccttgtaaccagagaaaaatacactggtagtttt 943
||||||| |||| |||||||||||||||||||||| | || ||| ||||||||||||||
Sbjct: 435 ttcatcttcctcggttggctgctcaaccttgtaacctgtgagaaagacactggtagtttt 376
Query: 944 cgatgtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggta 1003
|||||||| |||||||| |||||||||| |||||||||||| | |||||||| ||||
Sbjct: 375 tgatgtgtgcgacagctcgaactctttatcgaaaaccaaatcacactgtatctgagggtt 316
Query: 1004 tttgtcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaa 1063
||||| |||||||| || |||||||||||||||| |||||||||||||||||||| ||
Sbjct: 315 cttgtcaatagagagggtgccaatggcaagcttctcatcatcaactttgacatacatcaa 256
Query: 1064 ggcactgtcacttttctttgattccccaagggcagcctg 1102
| |||||||||||||||||||||||||||| ||||||||
Sbjct: 255 gacactgtcacttttctttgattccccaagagcagcctg 217
Score = 81.8 bits (41), Expect = 1e-013
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 1099 cctgggaaacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtt 1158
||||||||| ||||| |||||||||||||||||||||||| || |||||| |||||| |
Sbjct: 105 cctgggaaaggtgcaagataaagccatgtccaggctcacatttaacagtgcttccaggct 46
Query: 1159 tgacctcgagacc 1171
| |||||||||||
Sbjct: 45 taacctcgagacc 33
Score = 52.0 bits (26), Expect = 1e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 851 ctcctcctcttcatcctcagaatcaagatccatt 884
||||||||| ||||| ||||||||||||||||||
Sbjct: 589 ctcctcctcctcatcttcagaatcaagatccatt 556
>gb|CF771551.1|CF771551 DSBF1_21_A02.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_21_A02_A010 3', mRNA sequence
Length = 382
Score = 216 bits (109), Expect = 4e-054
Identities = 166/185 (89%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 185 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 126
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 125 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 66
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtttgcaggggtcttg 413
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 65 accgagccaccagattttggagacttctcctttgatttatcattgtttgcaggggtcttg 6
Query: 414 ccttt 418
|||||
Sbjct: 5 ccttt 1
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 266 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 207
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 206 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 147
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 146 cacttgg-caccatgcttcgccttc 123
>gb|CW189339.1|CW189339 104_610_11173911_148_37102_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173911, DNA
sequence
Length = 660
Score = 194 bits (98), Expect = 1e-047
Identities = 125/134 (93%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
|||| |||| |||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct: 174 cttggtgcaagatttgcaagggaccgagccaccagattttggagacttctcctttgattt 115
Query: 392 gtcattgtttgcaggggtcttgccttttgctgggtgtggagttgccacatgggtggcacc 451
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 114 atcattgtttgcaggggtcttgccttttgctgggtgtggagttgccacatggacggcgcc 55
Query: 452 cttcttgccacctg 465
||||||||||||||
Sbjct: 54 cttcttgccacctg 41
Score = 93.7 bits (47), Expect = 4e-017
Identities = 83/95 (87%)
Strand = Plus / Minus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 365 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 306
Query: 294 ttggagtgagcctgcagagccatctcactattgaa 328
|| ||||||||||| || ||||||||||| |||||
Sbjct: 305 ttcgagtgagcctgaagtgccatctcactgttgaa 271
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 446 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 387
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 386 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 327
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 326 cacttgg-caccatgcttcgccttc 303
>gb|CW210513.1|CW210513 104_641_11189834_116_37009_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189834, DNA
sequence
Length = 671
Score = 184 bits (93), Expect = 1e-044
Identities = 153/173 (88%)
Strand = Plus / Plus
Query: 930 acactggtagttttcgatgtgtgtgacagctcaaactctttattgaaaaccaaatcgaat 989
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 2 acactggtagtttttgatgtgtgcgacagctcaaactctttatcgaaaaccaaatcgaat 61
Query: 990 tgtatctgtgggtatttgtcgatagagagcgttccaatggcaagcttcttgtcatcaact 1049
|||| || || | ||||| |||||||| ||||||||||||||||||| || || |||
Sbjct: 62 tgtacttgcggaaacttgtcaatagagagggttccaatggcaagcttctgatcgtcgact 121
Query: 1050 ttgacatacattaaggcactgtcacttttctttgattccccaagggcagcctg 1102
||||| ||||| |||||| |||||||||||||||||||||| || ||||||||
Sbjct: 122 ttgacgtacatcaaggcattgtcacttttctttgattccccgagagcagcctg 174
Score = 105 bits (53), Expect = 1e-020
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 1099 cctgggaaacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtt 1158
|||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 337 cctgcgaaaggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggct 396
Query: 1159 tgacctcgagacc 1171
||||||| |||||
Sbjct: 397 tgacctcaagacc 409
>gb|CF756863.1|CF756863 DSAF1_10_E05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_10_E05_A011 3', mRNA sequence
Length = 423
Score = 180 bits (91), Expect = 2e-043
Identities = 148/167 (88%)
Strand = Plus / Plus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 245 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 304
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 305 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 364
Query: 354 actgacccaccagattttggagacttctccgttgatttgtcattgtt 400
|| || |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 365 accgagccaccagattttggagacttctcctttgatttatcattgtt 411
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 164 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 223
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 224 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 283
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 284 cacttgg-caccatgcttcgccttc 307
>gb|CF772897.1|CF772897 DSBF1_40_G02.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_40_G02_A010 3', mRNA sequence
Length = 420
Score = 163 bits (82), Expect = 5e-038
Identities = 133/150 (88%)
Strand = Plus / Plus
Query: 234 ccatgcttctccttcatggactcagttggacctgcaactcatttggccccatgcttcgcc 293
||||||||| ||||| |||||||||| |||||| ||||| ||||| ||||||||||||
Sbjct: 267 ccatgcttcgccttcgaagactcagttgtacctgcgactcacttggcaccatgcttcgcc 326
Query: 294 ttggagtgagcctgcagagccatctcactattgaatgtcttgctgcatgatttgcaaggg 353
|| ||||||||||| || ||||||||||| ||||| |||||| |||| ||||||||||||
Sbjct: 327 ttcgagtgagcctgaagtgccatctcactgttgaaagtcttggtgcaagatttgcaaggg 386
Query: 354 actgacccaccagattttggagacttctcc 383
|| || ||||||||||||||||||||||||
Sbjct: 387 accgagccaccagattttggagacttctcc 416
Score = 89.7 bits (45), Expect = 6e-016
Identities = 122/145 (84%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
|||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 186 aatcacatagccactagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 245
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| ||||| ||||| || ||||||||||
Sbjct: 246 ttccagactcacttaaacctcccatgcttcgccttcgaagactcagttgtacctgcgact 305
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 306 cacttgg-caccatgcttcgccttc 329
>gb|CF756864.1|CF756864 DSAF1_10_E06.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_10_E06_A011 3', mRNA sequence
Length = 370
Score = 159 bits (80), Expect = 8e-037
Identities = 119/132 (90%)
Strand = Plus / Plus
Query: 252 gactcagttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcaga 311
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 239 gactcagttgtacctgcgactcacttggcaccatgcttcgccttcgagtgagcctgaagt 298
Query: 312 gccatctcactattgaatgtcttgctgcatgatttgcaagggactgacccaccagatttt 371
||||||||||| ||||| |||||| |||| |||||||||||||| || ||||||||||||
Sbjct: 299 gccatctcactgttgaaagtcttggtgcaagatttgcaagggaccgagccaccagatttt 358
Query: 372 ggagacttctcc 383
||||||||||||
Sbjct: 359 ggagacttctcc 370
Score = 73.8 bits (37), Expect = 4e-011
Identities = 120/145 (82%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 105 aatcacatagccacaagtctctaaacaaaataaggaca-gcctactaacatcgacaatct 163
||||||||||||| ||||||||||||||| |||| || ||||||| || ||||| | |
Sbjct: 140 aatcacatagccagtagtctctaaacaaaacaaggccaggcctacttccaccgacatttt 199
Query: 164 ttccagactcgcttggatctcccatgcttcaccttcatggactcgaatggacctgcgact 223
|||||||||| ||| | |||||||||||| |||| ||||| || ||||||||||
Sbjct: 200 ttccagactcacttaaacctcccatgcttcgccttagaagactcagttgtacctgcgact 259
Query: 224 cacttggccaccatgcttctccttc 248
||||||| ||||||||||| |||||
Sbjct: 260 cacttgg-caccatgcttcgccttc 283
>gb|CF756950.1|CF756950 DSAF1_11_F12.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_11_F12_A011 3', mRNA sequence
Length = 189
Score = 159 bits (80), Expect = 8e-037
Identities = 125/140 (89%)
Strand = Plus / Plus
Query: 252 gactcagttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcaga 311
|||||||||| |||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 47 gactcagttgtacctgcgactcacttggcaccatgcttcgccttcgagtgagcctgaagt 106
Query: 312 gccatctcactattgaatgtcttgctgcatgatttgcaagggactgacccaccagatttt 371
||||||||||| ||||| |||||| |||| |||| ||||||||| || ||||||||||||
Sbjct: 107 gccatctcactgttgaaagtcttggtgcaagattcgcaagggaccgagccaccagatttt 166
Query: 372 ggagacttctccgttgattt 391
|||||||||||| |||||||
Sbjct: 167 ggagacttctcctttgattt 186
Score = 46.1 bits (23), Expect = 0.008
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 214 acctgcgactcacttggccaccatgcttctccttc 248
||||||||||||||||| ||||||||||| |||||
Sbjct: 58 acctgcgactcacttgg-caccatgcttcgccttc 91
>gb|CL148067.1|CL148067 104_327_10592830_148_31780_338 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592830, DNA
sequence
Length = 701
Score = 149 bits (75), Expect = 8e-034
Identities = 124/141 (87%), Gaps = 7/141 (4%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 204 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 145
Query: 392 gtcattgtttgcaggggtcttgcctttt-------gctgggtgtggagttgccacatggg 444
|||||||||||||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 144 gtcattgtttgcaggggtcttgccctttccacttggctgggtatggagttgccacatggg 85
Query: 445 tggcacccttcttgccacctg 465
|||| ||||||||||||||||
Sbjct: 84 tggcgcccttcttgccacctg 64
Score = 85.7 bits (43), Expect = 9e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 270 actcatttggccccatgcttcgccttggagtgagcctgcagagccatctcactattgaa 328
||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 363 actcacttggcccgatgcttcgcctttgagtgagcctgcagagccatctcactgttgaa 305
>gb|CW210514.1|CW210514 104_641_11189834_148_37008_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189834, DNA
sequence
Length = 698
Score = 147 bits (74), Expect = 3e-033
Identities = 138/158 (87%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 945 gatgtgtgtgacagctcaaactctttattgaaaaccaaatcgaattgtatctgtgggtat 1004
|||||||| |||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 698 gatgtgtgcgacagctcaaactctt-atcgaaaaccaaatcgaattgtacttgcggaaac 640
Query: 1005 ttgtcgatagagagcgttccaatggcaagcttcttgtcatcaactttgacatacattaag 1064
||||| |||||||| ||||||||||||||||||| || || |||||||| ||||| |||
Sbjct: 639 ttgtcaatagagagggttccaatggcaagcttctgatcgtcgactttgacgtacatcaag 580
Query: 1065 gcactgtcacttttctttgattccccaagggcagcctg 1102
||| |||||||||||||||||||||| || ||||||||
Sbjct: 579 gcattgtcacttttctttgattccccgagagcagcctg 542
Score = 105 bits (53), Expect = 1e-020
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 1099 cctgggaaacgtgcaggataaagccatgtccaggctcacacttgacagtggatccaggtt 1158
|||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 379 cctgcgaaaggtgcaggataaagccatgtccaggctcacacttaacagtggatccaggct 320
Query: 1159 tgacctcgagacc 1171
||||||| |||||
Sbjct: 319 tgacctcaagacc 307
>gb|CW221777.1|CW221777 104_657_11202028_148_37450_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202028, DNA
sequence
Length = 723
Score = 147 bits (74), Expect = 3e-033
Identities = 95/102 (93%)
Strand = Plus / Plus
Query: 460 cacctgttttctgggctggcggtgtggcaacctttgctttcttatcagaaagaggcgttt 519
||||||| |||||||||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 313 cacctgtcttctgggctgacggtgtggcaacctttactttcttatcagaaagcagagttt 372
Query: 520 tcagagcattttcagcacctctcttcttgcctgcctctggct 561
||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 373 tcagagcattttcagcagctctcttcttgcctgcctctggct 414
Score = 145 bits (73), Expect = 1e-032
Identities = 123/140 (87%), Gaps = 6/140 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 83 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 142
Query: 392 gtcattgtttgcaggggtcttgcc------ttttgctgggtgtggagttgccacatgggt 445
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 143 gtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggagttgccacatgggt 202
Query: 446 ggcacccttcttgccacctg 465
||| ||||||||||||||||
Sbjct: 203 ggcgcccttcttgccacctg 222
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 581 ttcctcgtcatcatcactggtatcatcctcatcacttgaatc 622
|||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 600 ttcctcctcaccctcactggtatcatcctcatcacttgaatc 641
>gb|CW404199.1|CW404199 fsbb001f096d22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096d22, DNA
sequence
Length = 734
Score = 147 bits (74), Expect = 3e-033
Identities = 95/102 (93%)
Strand = Plus / Minus
Query: 460 cacctgttttctgggctggcggtgtggcaacctttgctttcttatcagaaagaggcgttt 519
||||||| |||||||||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 330 cacctgtcttctgggctgacggtgtggcaacctttactttcttatcagaaagcagagttt 271
Query: 520 tcagagcattttcagcacctctcttcttgcctgcctctggct 561
||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 270 tcagagcattttcagcagctctcttcttgcctgcctctggct 229
Score = 145 bits (73), Expect = 1e-032
Identities = 123/140 (87%), Gaps = 6/140 (4%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 560 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 501
Query: 392 gtcattgtttgcaggggtcttgcc------ttttgctgggtgtggagttgccacatgggt 445
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 500 gtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggagttgccacatgggt 441
Query: 446 ggcacccttcttgccacctg 465
||| ||||||||||||||||
Sbjct: 440 ggcgcccttcttgccacctg 421
Score = 85.7 bits (43), Expect = 9e-015
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggcccc-atgcttcgccttggagtgagcctgcagagccatc 317
||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 731 ttggacctgtgactcacttggccccgatgcttcgcctttgagtgagcctgcagagccatc 672
Query: 318 tcactattgaa 328
||||| |||||
Sbjct: 671 tcactgttgaa 661
Score = 60.0 bits (30), Expect = 5e-007
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 581 ttcctcgtcatcatcactggtatcatcctcatcacttgaatc 622
|||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 43 ttcctcctcaccctcactggtatcatcctcatcacttgaatc 2
Score = 42.1 bits (21), Expect = 0.13
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 211 tggacctgcgactcacttggccaccatgcttctcctt 247
|||||||| ||||||||||||| | ||||||| ||||
Sbjct: 730 tggacctgtgactcacttggccccgatgcttcgcctt 694
>gb|CW060809.1|CW060809 104_304_10520059_114_30143 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520059, DNA
sequence
Length = 673
Score = 145 bits (73), Expect = 1e-032
Identities = 123/140 (87%), Gaps = 6/140 (4%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 231 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 172
Query: 392 gtcattgtttgcaggggtcttgcc------ttttgctgggtgtggagttgccacatgggt 445
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 171 gtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggagttgccacatgggt 112
Query: 446 ggcacccttcttgccacctg 465
||| ||||||||||||||||
Sbjct: 111 ggcgcccttcttgccacctg 92
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 401 ttggacctgtgactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 342
Query: 319 cactattgaa 328
|||| |||||
Sbjct: 341 cactgttgaa 332
>gb|CW346300.1|CW346300 104_849_11488951_116_36213_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488951, DNA
sequence
Length = 744
Score = 145 bits (73), Expect = 1e-032
Identities = 123/140 (87%), Gaps = 6/140 (4%)
Strand = Plus / Minus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 300 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 241
Query: 392 gtcattgtttgcaggggtcttgcc------ttttgctgggtgtggagttgccacatgggt 445
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 240 gtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggagttgccacatgggt 181
Query: 446 ggcacccttcttgccacctg 465
||| ||||||||||||||||
Sbjct: 180 ggcgcccttcttgccacctg 161
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 470 ttggacctgtgactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 411
Query: 319 cactattgaa 328
|||| |||||
Sbjct: 410 cactgttgaa 401
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 460 cacctgttttctgggctggcggtgtggcaacctttgctttcttatcagaaagaggcgttt 519
||||||| |||||||||| |||||||||||||||| |||||||||||||||| | ||||
Sbjct: 70 cacctgtcttctgggctgacggtgtggcaacctttactttcttatcagaaagcagagttt 11
Query: 520 tcagagcatt 529
||||||||||
Sbjct: 10 tcagagcatt 1
>gb|CW404200.1|CW404200 fsbb001f096d22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096d22, DNA
sequence
Length = 768
Score = 131 bits (66), Expect = 2e-028
Identities = 123/141 (87%), Gaps = 7/141 (4%)
Strand = Plus / Plus
Query: 332 cttgctgcatgatttgcaagggactgacccaccagattttggagacttctccgttgattt 391
||||||||| |||||||||||||| |||| ||||||| |||||||| ||||| |||| ||
Sbjct: 621 cttgctgcacgatttgcaagggaccgaccgaccagatcttggagacctctcctttgactt 680
Query: 392 gtcattgtttgcaggggtcttgcc------ttttgctgggtgtggagttgccacatgggt 445
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 681 gtcattgtttgcaggggtcttgcccgcccgcttggctgggtatggagttgccacatgggt 740
Query: 446 ggc-acccttcttgccacctg 465
||| ||||||||||||||||
Sbjct: 741 ggcgccccttcttgccacctg 761
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 451 ttggacctgtgactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 510
Query: 319 cactattgaa 328
|||| |||||
Sbjct: 511 cactgttgaa 520
>gb|CW134771.1|CW134771 104_519_11117487_148_34824_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117487, DNA
sequence
Length = 616
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 259 ttggacctgcaactcatttggccccatgcttcgccttggagtgagcctgcagagccatct 318
||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 183 ttggacctgtgactcacttggcccgatgcttcgcctttgagtgagcctgcagagccatct 124
Query: 319 cactattgaa 328
|||| |||||
Sbjct: 123 cactgttgaa 114
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 373,500
Number of Sequences: 832831
Number of extensions: 373500
Number of successful extensions: 108878
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108462
Number of HSP's gapped (non-prelim): 260
length of query: 1297
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1277
effective length of database: 474,703,049
effective search space: 606195793573
effective search space used: 606195793573
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)