BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV282349.1|CV282349 WS0184.B21_G07 PTxD-IL-N-A-9 Populus... 36 0.95
gb|CV282833.1|CV282833 WS0185.B21_L14 PTxD-IL-N-A-9 Populus... 36 0.95
emb|AJ891040.1| Populus tremula x Populus alba mRNA for alp... 36 0.95
gb|BU878770.1|BU878770 V051D04 Populus flower cDNA library ... 34 3.8
gb|BU885716.1|BU885716 R035B03 Populus root cDNA library Po... 34 3.8
gb|CF234500.1|CF234500 Ptajxojxo3E3E0309 Poplar cDNA librar... 34 3.8
gb|CV240431.1|CV240431 WS0251.B21_F20 PT-MB-N-A-15 Populus ... 34 3.8
gb|CV242361.1|CV242361 WS02514.B21.1_N16 PT-MB-N-A-15 Popul... 34 3.8
gb|CV264727.1|CV264727 WS02025.B21_E24 PTxN-IB-N-A-11 Popul... 34 3.8
gb|CV270049.1|CV270049 WS0209.B21_P06 PTxN-IB-N-A-11 Populu... 34 3.8
gb|DN502099.1|DN502099 V051D04.5pR Populus male catkins cDN... 34 3.8
gb|DT487223.1|DT487223 WS02533.B21_B20 PT-MB-N-A-15 Populus... 34 3.8
gb|DT489358.1|DT489358 WS02542.B21_A04 PT-MB-N-A-15 Populus... 34 3.8
gb|DT489486.1|DT489486 WS02542.B21_F20 PT-MB-N-A-15 Populus... 34 3.8
gb|DT492028.1|DT492028 WS02549.C21_H14 PT-MB-N-A-15 Populus... 34 3.8
>gb|CV282349.1|CV282349 WS0184.B21_G07 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0184_G07 3', mRNA sequence
Length = 611
Score = 36.2 bits (18), Expect = 0.95
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 220 agtggtaaactgtccccttttt 241
|||| |||||||||||||||||
Sbjct: 365 agtgataaactgtccccttttt 344
>gb|CV282833.1|CV282833 WS0185.B21_L14 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0185_L14 3', mRNA sequence
Length = 605
Score = 36.2 bits (18), Expect = 0.95
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 220 agtggtaaactgtccccttttt 241
|||| |||||||||||||||||
Sbjct: 365 agtgataaactgtccccttttt 344
>emb|AJ891040.1| Populus tremula x Populus alba mRNA for alpha 1,3 fucosyltransferase
(poFUT2 gene), clone INRA 717 1B4
Length = 1569
Score = 36.2 bits (18), Expect = 0.95
Identities = 51/62 (82%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
|||||||| || ||||| || || |||||||| || | || || |||||||||||||||
Sbjct: 1163 caaagacggcatgatgagtgtactgctgccatatctaccagtgccttgaaagaatcagat 1104
Query: 381 gg 382
||
Sbjct: 1103 gg 1102
>gb|BU878770.1|BU878770 V051D04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 336
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 364 ctttgaaagaatcagat 380
|||||||||||||||||
Sbjct: 125 ctttgaaagaatcagat 109
>gb|BU885716.1|BU885716 R035B03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 663
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 482 taaattctgtatagttt 466
>gb|CF234500.1|CF234500 Ptajxojxo3E3E0309 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 604
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 545 taaattctgtatagttt 529
>gb|CV240431.1|CV240431 WS0251.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_F20 3', mRNA sequence
Length = 882
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 586 taaattctgtatagttt 602
>gb|CV242361.1|CV242361 WS02514.B21.1_N16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_N16 3', mRNA sequence
Length = 877
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 586 taaattctgtatagttt 602
>gb|CV264727.1|CV264727 WS02025.B21_E24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02025_E24 3', mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 262 gatttgtaaattttgga 278
|||||||||||||||||
Sbjct: 102 gatttgtaaattttgga 86
>gb|CV270049.1|CV270049 WS0209.B21_P06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_P06 3', mRNA sequence
Length = 226
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 262 gatttgtaaattttgga 278
|||||||||||||||||
Sbjct: 122 gatttgtaaattttgga 106
>gb|DN502099.1|DN502099 V051D04.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V051D04 5', mRNA sequence
Length = 273
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 364 ctttgaaagaatcagat 380
|||||||||||||||||
Sbjct: 146 ctttgaaagaatcagat 130
>gb|DT487223.1|DT487223 WS02533.B21_B20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_B20 3', mRNA sequence
Length = 859
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 591 taaattctgtatagttt 607
>gb|DT489358.1|DT489358 WS02542.B21_A04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_A04 3', mRNA sequence
Length = 872
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 310 caatatgtatacaaaga 326
|||||||||||||||||
Sbjct: 616 caatatgtatacaaaga 600
>gb|DT489486.1|DT489486 WS02542.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_F20 3', mRNA sequence
Length = 925
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 588 taaattctgtatagttt 604
>gb|DT492028.1|DT492028 WS02549.C21_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02549_H14 3', mRNA sequence
Length = 869
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 33 taaattctgtatagttt 49
|||||||||||||||||
Sbjct: 617 taaattctgtatagttt 633
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,273
Number of Sequences: 369679
Number of extensions: 39273
Number of successful extensions: 9672
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9657
Number of HSP's gapped (non-prelim): 15
length of query: 394
length of database: 203,408,664
effective HSP length: 18
effective length of query: 376
effective length of database: 196,754,442
effective search space: 73979670192
effective search space used: 73979670192
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)