BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF36h01.yg.2.1
(689 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Popul... 44 0.007
gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Popul... 44 0.007
gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated wit... 44 0.007
gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Popul... 44 0.007
gb|AI165085.1|AI165085 A074p79u Hybrid aspen plasmid librar... 42 0.027
gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA librar... 42 0.027
gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA librar... 42 0.027
gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA librar... 42 0.027
gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA librar... 42 0.027
gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA librar... 42 0.027
gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA librar... 42 0.027
gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cD... 42 0.027
gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA li... 42 0.027
gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Po... 42 0.027
gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Librar... 42 0.027
gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Librar... 42 0.027
gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library f... 42 0.027
gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA li... 42 0.027
gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA li... 42 0.027
gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substr... 42 0.027
gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal libr... 42 0.027
gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA li... 42 0.027
gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase ... 42 0.027
gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A ... 42 0.027
gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA librar... 38 0.43
gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA librar... 38 0.43
>gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_M22 3', mRNA sequence
Length = 925
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 51 aggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggtt 100
||||| || |||||||| | |||||||| || |||||||||||||||||
Sbjct: 876 aggaaggcagcgttgacgacatactgaaggggctgaggccttccatggtt 925
>gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_E02 3', mRNA sequence
Length = 807
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 51 aggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggtt 100
||||| || |||||||| | |||||||| || |||||||||||||||||
Sbjct: 186 aggaaggcagcgttgacgacatactgaaggggctgaggccttccatggtt 137
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 tggttgtggaatgtcctcagtatttcttc 205
|||||||| ||||| ||||||||||||||
Sbjct: 60 tggttgtgaaatgtactcagtatttcttc 32
>gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 51 aggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggtt 100
||||| || |||||||| | |||||||| || |||||||||||||||||
Sbjct: 309 aggaaggcagcgttgacgacatactgaaggggctgaggccttccatggtt 260
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 tggttgtggaatgtcctcagtatttcttc 205
|||||||| ||||| ||||||||||||||
Sbjct: 183 tggttgtgaaatgtactcagtatttcttc 155
>gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 5', mRNA sequence
Length = 822
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 51 aggaaagctgcgttgacagcgtactgaagcggttgaggccttccatggtt 100
||||| || |||||||| | |||||||| || |||||||||||||||||
Sbjct: 55 aggaaggcagcgttgacgacatactgaaggggctgaggccttccatggtt 6
>gb|AI165085.1|AI165085 A074p79u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 55 tactgaaggggctgaggccttccatggtt 27
>gb|BI127335.1|BI127335 G058P78Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 236 tactgaaggggctgaggccttccatggtt 208
>gb|BI127343.1|BI127343 G058P86Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 320 tactgaaggggctgaggccttccatggtt 292
>gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 61 tactgaaggggctgaggccttccatggtt 33
>gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 31 tactgaaggggctgaggccttccatggtt 3
>gb|BI128862.1|BI128862 G082P55Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 201 tactgaaggggctgaggccttccatggtt 173
>gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 90 tactgaaggggctgaggccttccatggtt 62
>gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 449
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 119 tactgaaggggctgaggccttccatggtt 91
>gb|BU836626.1|BU836626 T088H07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 757
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 396 tactgaaggggctgaggccttccatggtt 368
>gb|BU896715.1|BU896715 X044F08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 450 tactgaaggggctgaggccttccatggtt 422
>gb|CA927064.1|CA927064 MTU6CR.P4.E04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 254
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 186 tactgaaggggctgaggccttccatggtt 158
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 tggttgtggaatgtcctcagtatttcttc 205
|||||||| |||||||| |||||||||||
Sbjct: 81 tggttgtgaaatgtccttagtatttcttc 53
>gb|CA933005.1|CA933005 MTU5CS.P2.C06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 185
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 117 tactgaaggggctgaggccttccatggtt 89
>gb|CF236393.1|CF236393 PtaJXT2C3C0305 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 109 tactgaaggggctgaggccttccatggtt 81
>gb|CK107886.1|CK107886 G058P78 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P78 5', mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 242 tactgaaggggctgaggccttccatggtt 214
>gb|CK107894.1|CK107894 G058P86 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G058P86 5', mRNA sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 320 tactgaaggggctgaggccttccatggtt 292
>gb|CK115022.1|CK115022 Y002F04 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y002F04 5', mRNA sequence
Length = 568
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 337 tactgaaggggctgaggccttccatggtt 309
>gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 860
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 187 tactgaaggggctgaggccttccatggtt 159
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 177 tggttgtggaatgtcctcagtatttcttc 205
|||||||| ||||| ||||||||||||||
Sbjct: 82 tggttgtgaaatgtactcagtatttcttc 54
>gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 5', mRNA sequence
Length = 830
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 130 tactgaaggggctgaggccttccatggtt 102
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds
Length = 2562
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 1593 tactgaaggggctgaggccttccatggtt 1565
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds
Length = 1860
Score = 42.1 bits (21), Expect = 0.027
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatggtt 100
|||||||| || |||||||||||||||||
Sbjct: 1331 tactgaaggggctgaggccttccatggtt 1303
>gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 74 ctgaagcggttgaggccttccatggtt 100
|||||| || |||||||||||||||||
Sbjct: 130 ctgaaggggctgaggccttccatggtt 104
>gb|BI131594.1|BI131594 G123P05Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 436
Score = 38.2 bits (19), Expect = 0.43
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 72 tactgaagcggttgaggccttccatgg 98
|||||||| || |||||||||||||||
Sbjct: 339 tactgaaggggctgaggccttccatgg 313
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,126
Number of Sequences: 369679
Number of extensions: 52126
Number of successful extensions: 13577
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13521
Number of HSP's gapped (non-prelim): 56
length of query: 689
length of database: 203,408,664
effective HSP length: 19
effective length of query: 670
effective length of database: 196,384,763
effective search space: 131577791210
effective search space used: 131577791210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)