BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX169379.1|CX169379 D11_69-77_07.ab1 leaf inoculated wit... 46 0.001
gb|DV465018.1|DV465018 MTUNUL1.P33.H06 NUL Populus fremonti... 46 0.001
gb|DV465380.1|DV465380 MTUNUL1.P38.H01 NUL Populus fremonti... 46 0.001
gb|DV466663.1|DV466663 MTUNUL1.P8.F03 NUL Populus fremontii... 46 0.001
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 44 0.004
gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Libr... 44 0.004
gb|CV257140.1|CV257140 WS0245.B21_M16 PTxD-ICC-N-A-14 Popul... 42 0.015
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 42 0.015
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 42 0.015
gb|DV464919.1|DV464919 MTUNUL1.P32.E08 NUL Populus fremonti... 40 0.058
gb|CN517664.1|CN517664 GQ0093.B3_I15 GQ009 Populus trichoca... 38 0.23
gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in... 38 0.23
gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6... 38 0.23
gb|DN493311.1|DN493311 X078A05.3pR Populus wood cDNA librar... 38 0.23
gb|DT495597.1|DT495597 WS01120.BR_P03 PT-P-FL-A-2 Populus t... 38 0.23
dbj|AB025796.1| Populus alba POPCEL2 mRNA for endo-1,4-beta... 38 0.23
dbj|AB049200.1| Populus alba PopCel2 gene for endo-1,4-beta... 38 0.23
>gb|CX169379.1|CX169379 D11_69-77_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 728
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| |||||||||
Sbjct: 695 ttgaacacaattgaagctgcagccaaggcagcagc 661
>gb|DV465018.1|DV465018 MTUNUL1.P33.H06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 934
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| |||||||||
Sbjct: 673 ttgaacacaattgaagctgcagccaaggcagcagc 639
>gb|DV465380.1|DV465380 MTUNUL1.P38.H01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 930
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| |||||||||
Sbjct: 676 ttgaacacaattgaagctgcagccaaggcagcagc 642
>gb|DV466663.1|DV466663 MTUNUL1.P8.F03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 896
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| |||||||||
Sbjct: 504 ttgaacacaattgaagctgcagccaaggcagcagc 470
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 503 ttcgagcggccgcccgggcagg 482
>gb|CF119260.1|CF119260 MTU10CS.P15.E09 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 189
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgct 372
||||||||||||||||||||||
Sbjct: 168 gtacctcggccgcgaccacgct 189
>gb|CV257140.1|CV257140 WS0245.B21_M16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M16 3', mRNA sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.015
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 265 tcagcagatgaattgaaggttttga 289
|||||||||| ||||||||||||||
Sbjct: 77 tcagcagatggattgaaggttttga 53
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related
protein 1 (RB1) mRNA, complete cds
Length = 3572
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 17 tcgagcggccgcccgggcagg 37
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein
TIR1 (TIR1) mRNA, complete cds
Length = 2646
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 43 tcgagcggccgcccgggcagg 63
>gb|DV464919.1|DV464919 MTUNUL1.P32.E08 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 929
Score = 40.1 bits (20), Expect = 0.058
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 gaagctgcagccagggcagc 104
||||||||||||||||||||
Sbjct: 444 gaagctgcagccagggcagc 463
>gb|CN517664.1|CN517664 GQ0093.B3_I15 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_I15 5', mRNA sequence
Length = 437
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85 gaagctgcagccagggcagcagc 107
||||||||||||| |||||||||
Sbjct: 416 gaagctgcagccaaggcagcagc 394
>gb|AJ772174.1|AJ772174 AJ772174 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002E01F1, mRNA sequence
Length = 386
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||| ||||||||||
Sbjct: 364 gtacctcggccgggaccacgcta 386
>gb|AJ770035.1|AJ770035 AJ770035 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006A08F1, mRNA sequence
Length = 179
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||| ||||||||||
Sbjct: 157 gtacctcggccgggaccacgcta 179
>gb|DN493311.1|DN493311 X078A05.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X078A05 3', mRNA sequence
Length = 622
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85 gaagctgcagccagggcagcagc 107
||||||||||||||||| |||||
Sbjct: 563 gaagctgcagccagggcggcagc 541
>gb|DT495597.1|DT495597 WS01120.BR_P03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_P03 5', mRNA sequence
Length = 865
Score = 38.2 bits (19), Expect = 0.23
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 71 ccttgaacactatggaagctgcagcca 97
||||||||||||| || ||||||||||
Sbjct: 742 ccttgaacactattgatgctgcagcca 716
>dbj|AB025796.1| Populus alba POPCEL2 mRNA for endo-1,4-beta glucanase, complete cds
Length = 1616
Score = 38.2 bits (19), Expect = 0.23
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| ||| |||||
Sbjct: 603 ttgaacacaattgaagctgcagccaaggcggcagc 569
>dbj|AB049200.1| Populus alba PopCel2 gene for endo-1,4-beta-glucanase, complete cds
Length = 4603
Score = 38.2 bits (19), Expect = 0.23
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 73 ttgaacactatggaagctgcagccagggcagcagc 107
|||||||| || ||||||||||||| ||| |||||
Sbjct: 3193 ttgaacacaattgaagctgcagccaaggcggcagc 3159
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,951
Number of Sequences: 369679
Number of extensions: 34951
Number of successful extensions: 9621
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9602
Number of HSP's gapped (non-prelim): 19
length of query: 373
length of database: 203,408,664
effective HSP length: 18
effective length of query: 355
effective length of database: 196,754,442
effective search space: 69847826910
effective search space used: 69847826910
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)