BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829501.2.1
(1141 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV244512.1|CV244512 WS0254.B21_N21 PT-MB-N-A-15 Populus ... 40 0.18
gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Po... 40 0.18
>gb|CV244512.1|CV244512 WS0254.B21_N21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_N21 3', mRNA sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 200 accccaagcaagtcacagta 219
||||||||||||||||||||
Sbjct: 168 accccaagcaagtcacagta 187
>gb|CX659801.1|CX659801 PO01014C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014C09 5', mRNA sequence
Length = 397
Score = 40.1 bits (20), Expect = 0.18
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 362 cccgtcatgacgtcgtggcacgacggcttgggcgactgcggcgtcatccagaacca 417
||||| ||||| | |||||| || ||||| || ||||| || ||||||||||||||
Sbjct: 90 cccgtgatgacattgtggcatgagggctttggagactgtggtgtcatccagaacca 35
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,930
Number of Sequences: 369679
Number of extensions: 77930
Number of successful extensions: 20764
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20761
Number of HSP's gapped (non-prelim): 3
length of query: 1141
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1122
effective length of database: 196,384,763
effective search space: 220343704086
effective search space used: 220343704086
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)